ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast62b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC009391.16| Drosophila melanogaster clone BACR21I23, complet... 42 1.6
2ref|XM_790260.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.6
3emb|AL672010.8| Mouse DNA sequence from clone RP23-223C15 on chr... 42 1.6
4dbj|AK049137.1| Mus musculus ES cells cDNA, RIKEN full-length en... 42 1.6
5emb|BX276093.11| Zebrafish DNA sequence from clone DKEY-94F20 in... 42 1.6
6gb|AE003780.4| Drosophila melanogaster chromosome 3R, section 11... 42 1.6
7emb|AL928975.10| Zebrafish DNA sequence from clone CH211-133N4, ... 42 1.6
8gb|AC153728.1| Mus musculus BAC RP23-83N17 (Roswell Park Cancer... 40 6.3
9ref|NM_106171.2| Arabidopsis thaliana unknown protein AT1G75150 ... 40 6.3
10gb|AC134397.6| Mus musculus chromosome 13, clone RP23-265J12, co... 40 6.3
11ref|XR_004463.1| PREDICTED: Mus musculus similar to multi-substr... 40 6.3
12ref|XR_002000.1| PREDICTED: Mus musculus similar to multi-substr... 40 6.3
13emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome 40 6.3
14gb|AC102368.6| Mus musculus chromosome 14, clone RP23-220D8, com... 40 6.3
15gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, com... 40 6.3
16emb|AL161436.12| Human DNA sequence from clone RP11-377N20 on ch... 40 6.3
17emb|BX842704.15| Zebrafish DNA sequence from clone DKEY-177D20 i... 40 6.3
18gb|AC008543.9| Homo sapiens chromosome 19 clone CTC-499B15, comp... 40 6.3
19gb|AC098965.2| Homo sapiens chromosome 16 clone RP11-419L9, comp... 40 6.3
20dbj|AK076224.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 40 6.3
21gb|AC154460.2| Mus musculus BAC clone RP24-163G22 from chromosom... 40 6.3
22gb|AC025814.7|AC025814 Arabidopsis thaliana chromosome 1 BAC F22... 40 6.3
23gb|BC093525.1| Mus musculus multiple substrate lipid kinase, mRN... 40 6.3
24ref|NM_023538.1| Mus musculus multiple substrate lipid kinase (M... 40 6.3
25gb|AC102738.9| Mus musculus chromosome 3, clone RP24-303G10, com... 40 6.3
26dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 6.3
27emb|AL670024.7| Mouse DNA sequence from clone RP23-254F7 on chro... 40 6.3
28gb|AC149886.2| Xenopus tropicalis clone ISB-145C16, complete seq... 40 6.3
29gb|BC019145.1| Mus musculus multiple substrate lipid kinase, mRN... 40 6.3
30dbj|AP003477.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 6.3
31emb|AJ401619.1|MMU401619 Mus musculus mRNA for putative lipid ki... 40 6.3
32dbj|AB044566.1| Oncorhynchus mykiss mRNA for inhibin, complete cds 40 6.3

>gb|AC009391.16| Drosophila melanogaster clone BACR21I23, complete sequence
          Length = 189254

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 339    aacacctttatacagaagactgtcg 363
              |||||||||||||| ||||||||||
Sbjct: 115406 aacacctttatacaaaagactgtcg 115430



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>ref|XM_790260.1| PREDICTED: Strongylocentrotus purpuratus similar to
            Calcineurin-binding protein Cabin 1 (Calcineurin
            inhibitor) (CAIN) (LOC590663), mRNA
          Length = 3750

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 434  ccatttcctcatccgtgatggaatc 458
            |||||||||||||| ||||||||||
Sbjct: 2626 ccatttcctcatccatgatggaatc 2602



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>emb|AL672010.8| Mouse DNA sequence from clone RP23-223C15 on chromosome 11 Contains
             three novel genes and a CpG island, complete sequence
          Length = 193223

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 324   tctggggccacccttaacacc 344
             |||||||||||||||||||||
Sbjct: 83660 tctggggccacccttaacacc 83640



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>dbj|AK049137.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
            clone:C330006H24 product:inferred: Similar to KIAA0789
            gene product {Homo sapiens}, full insert sequence
          Length = 1735

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 324  tctggggccacccttaacacc 344
            |||||||||||||||||||||
Sbjct: 1299 tctggggccacccttaacacc 1279



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>emb|BX276093.11| Zebrafish DNA sequence from clone DKEY-94F20 in linkage group 12,
             complete sequence
          Length = 38123

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    gaattattttgattaaaaatg 33
             |||||||||||||||||||||
Sbjct: 34583 gaattattttgattaaaaatg 34563



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>gb|AE003780.4| Drosophila melanogaster chromosome 3R, section 118 of 118 of the complete
              sequence
          Length = 256818

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 339    aacacctttatacagaagactgtcg 363
              |||||||||||||| ||||||||||
Sbjct: 182970 aacacctttatacaaaagactgtcg 182994



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>emb|AL928975.10| Zebrafish DNA sequence from clone CH211-133N4, complete sequence
          Length = 174480

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    tgaattattttgattaaaaat 32
             |||||||||||||||||||||
Sbjct: 57164 tgaattattttgattaaaaat 57144



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>gb|AC153728.1| Mus musculus  BAC RP23-83N17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 226417

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   gagcctcgccctctttctgg 276
             ||||||||||||||||||||
Sbjct: 51143 gagcctcgccctctttctgg 51124



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>ref|NM_106171.2| Arabidopsis thaliana unknown protein AT1G75150 mRNA, complete cds
          Length = 2738

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 427  ttcttttccatttcctcatc 446
            ||||||||||||||||||||
Sbjct: 1782 ttcttttccatttcctcatc 1763



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>gb|AC134397.6| Mus musculus chromosome 13, clone RP23-265J12, complete sequence
          Length = 192662

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    gagcctcgccctctttctgg 276
              ||||||||||||||||||||
Sbjct: 185258 gagcctcgccctctttctgg 185277



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>ref|XR_004463.1| PREDICTED: Mus musculus similar to multi-substrate lipid kinase
            (LOC672697), mRNA
          Length = 2208

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 257  gagcctcgccctctttctgg 276
            ||||||||||||||||||||
Sbjct: 1709 gagcctcgccctctttctgg 1728



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>ref|XR_002000.1| PREDICTED: Mus musculus similar to multi-substrate lipid kinase
            (LOC667266), mRNA
          Length = 2205

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 257  gagcctcgccctctttctgg 276
            ||||||||||||||||||||
Sbjct: 1706 gagcctcgccctctttctgg 1725



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>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome
          Length = 1395502

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      ttgcagcaggtgaattattt 21
              ||||||||||||||||||||
Sbjct: 503807 ttgcagcaggtgaattattt 503788



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>gb|AC102368.6| Mus musculus chromosome 14, clone RP23-220D8, complete sequence
          Length = 208781

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 121    aaattgttcataatttcatgattg 144
              |||||||||| |||||||||||||
Sbjct: 134066 aaattgttcaaaatttcatgattg 134043



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>gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, complete sequence
          Length = 247394

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 257  gagcctcgccctctttctgg 276
            ||||||||||||||||||||
Sbjct: 2070 gagcctcgccctctttctgg 2051



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>emb|AL161436.12| Human DNA sequence from clone RP11-377N20 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 124814

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     gcagcaggtgaattattttg 23
             ||||||||||||||||||||
Sbjct: 62817 gcagcaggtgaattattttg 62798



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>emb|BX842704.15| Zebrafish DNA sequence from clone DKEY-177D20 in linkage group 20
             Contains four CpG islands, complete sequence
          Length = 154958

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   atattcagttgtgaaatttg 180
             ||||||||||||||||||||
Sbjct: 68930 atattcagttgtgaaatttg 68911



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>gb|AC008543.9| Homo sapiens chromosome 19 clone CTC-499B15, complete sequence
          Length = 231247

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    ttcatgatactgaaaggaat 63
             ||||||||||||||||||||
Sbjct: 28873 ttcatgatactgaaaggaat 28854



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>gb|AC098965.2| Homo sapiens chromosome 16 clone RP11-419L9, complete sequence
          Length = 191911

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    gattaaaaatggaggtagtt 42
             ||||||||||||||||||||
Sbjct: 87343 gattaaaaatggaggtagtt 87362



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>dbj|AK076224.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:4022449D19 product:PUTATIVE LIPID KINASE,
            full insert sequence
          Length = 2121

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 257  gagcctcgccctctttctgg 276
            ||||||||||||||||||||
Sbjct: 1631 gagcctcgccctctttctgg 1650



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>gb|AC154460.2| Mus musculus BAC clone RP24-163G22 from chromosome 13, complete
             sequence
          Length = 197149

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 257   gagcctcgccctctttctgg 276
             ||||||||||||||||||||
Sbjct: 98533 gagcctcgccctctttctgg 98552



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>gb|AC025814.7|AC025814 Arabidopsis thaliana chromosome 1 BAC F22H5 genomic sequence, complete
             sequence
          Length = 68041

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 427   ttcttttccatttcctcatc 446
             ||||||||||||||||||||
Sbjct: 60497 ttcttttccatttcctcatc 60478



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>gb|BC093525.1| Mus musculus multiple substrate lipid kinase, mRNA (cDNA clone
            MGC:102619 IMAGE:5151866), complete cds
          Length = 2209

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 257  gagcctcgccctctttctgg 276
            ||||||||||||||||||||
Sbjct: 1698 gagcctcgccctctttctgg 1717



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>ref|NM_023538.1| Mus musculus multiple substrate lipid kinase (Mulk), mRNA
          Length = 2236

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 257  gagcctcgccctctttctgg 276
            ||||||||||||||||||||
Sbjct: 1722 gagcctcgccctctttctgg 1741



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>gb|AC102738.9| Mus musculus chromosome 3, clone RP24-303G10, complete sequence
          Length = 166697

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 315   gagcagtggtctggggccaccctt 338
             ||||||||||||||||||| ||||
Sbjct: 91636 gagcagtggtctggggccatcctt 91659



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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 149     aagtactcagtaatattcag 168
               ||||||||||||||||||||
Sbjct: 5885419 aagtactcagtaatattcag 5885438



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>emb|AL670024.7| Mouse DNA sequence from clone RP23-254F7 on chromosome X, complete
              sequence
          Length = 199747

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    gttgggcattcacttcctct 252
              ||||||||||||||||||||
Sbjct: 146022 gttgggcattcacttcctct 146003



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>gb|AC149886.2| Xenopus tropicalis clone ISB-145C16, complete sequence
          Length = 113384

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     gtgaattattttgattaaaa 30
              ||||||||||||||||||||
Sbjct: 103125 gtgaattattttgattaaaa 103106



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>gb|BC019145.1| Mus musculus multiple substrate lipid kinase, mRNA (cDNA clone
            MGC:29378 IMAGE:5051535), complete cds
          Length = 2236

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 257  gagcctcgccctctttctgg 276
            ||||||||||||||||||||
Sbjct: 1722 gagcctcgccctctttctgg 1741



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>dbj|AP003477.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB2047A4
          Length = 179110

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    aattattttgattaaaaatg 33
             ||||||||||||||||||||
Sbjct: 72202 aattattttgattaaaaatg 72221



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>emb|AJ401619.1|MMU401619 Mus musculus mRNA for putative lipid kinase
          Length = 2199

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 257  gagcctcgccctctttctgg 276
            ||||||||||||||||||||
Sbjct: 1702 gagcctcgccctctttctgg 1721



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>dbj|AB044566.1| Oncorhynchus mykiss mRNA for inhibin, complete cds
          Length = 1296

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   aattattttgattaaaaatg 33
            ||||||||||||||||||||
Sbjct: 1266 aattattttgattaaaaatg 1247


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,460,773
Number of Sequences: 3902068
Number of extensions: 4460773
Number of successful extensions: 93275
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93210
Number of HSP's gapped (non-prelim): 65
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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