ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast62a09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY846823.1| Triticum aestivum ribosomal protein L13a mRNA, complete cds Length = 666 Score = 519 bits (262), Expect = e-144 Identities = 295/306 (96%) Strand = Plus / Minus Query: 144 gatggcgcacaaaagctctgatctctcttagtatttgatcggggccaggatctccagctg 203 |||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 666 gatggcgcacggaagctctaatctctcttagtatttgatcggggctaggatctccagctg 607 Query: 204 agttcccaacttctcctcggctgccttctcggccttgacgcggagcttcgccagctgctt 263 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 606 agttcccaacttctcctcggccgccttctcggccttgacgcggagcttcgccagttgctt 547 Query: 264 tctcctgtcgtacgagaccttggccttctccttcctcttttcctccagctccctgatggt 323 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 546 tctcctgtcgtaggagaccttggccttctcctttctcttttcctccagctccctgatggt 487 Query: 324 gtcggcgtagttccatccgacctccttggagagctggcccaggaggcagtacctctgccc 383 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 486 gtcggcgtagttccatccgacctccttggagagctggccgaggaggcagtacctgtgccc 427 Query: 384 aggctgcagcctcagaaccttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgta 443 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 426 aggctgcagcctcagaaccttgagcgcgtcggggatgaccatgcgcttggtcctgtcgta 367 Query: 444 cggcgg 449 |||||| Sbjct: 366 cggcgg 361
>ref|XM_469814.1| Oryza sativa (japonica cultivar-group), mRNA Length = 935 Score = 343 bits (173), Expect = 3e-91 Identities = 251/277 (90%) Strand = Plus / Minus Query: 173 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 232 ||||||||||||| || || ||||||||||||| |||| |||||||||||||||||||| Sbjct: 692 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 633 Query: 233 cggccttgacgcggagcttcgccagctgctttctcctgtcgtacgagaccttggccttct 292 | |||||||| || ||||||||||| ||||| |||||||| || | ||||||||||||| Sbjct: 632 cagccttgacacgcagcttcgccagttgcttcctcctgtcataggcaaccttggccttct 573 Query: 293 ccttcctcttttcctccagctccctgatggtgtcggcgtagttccatccgacctccttgg 352 |||||||||| ||||| ||||||||||||||||| ||||||||| || |||||||||| Sbjct: 572 ccttcctcttctcctcaagctccctgatggtgtcatagtagttccagccaacctccttgg 513 Query: 353 agagctggcccaggaggcagtacctctgcccaggctgcagcctcagaaccttgagcgcgt 412 |||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct: 512 agagctggccgaggaggcagtacttgtgcccaggctgcagcctcagaaccttgagcgcgt 453 Query: 413 cgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 |||| |||||||||||||||||||||||||||||||| Sbjct: 452 cggggatgaccatgcgcttggtcctgtcgtacggcgg 416 Score = 46.1 bits (23), Expect = 0.098 Identities = 45/51 (88%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 21 tagaaaatttcaaatgagggtagcagaact-gcatgcataacaaaggttta 70 ||||||||||||||| | ||||||||||| | ||||||||||| |||||| Sbjct: 838 tagaaaatttcaaataggagtagcagaactgggatgcataacaacggttta 788
>dbj|AK106078.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A04, full insert sequence Length = 1048 Score = 343 bits (173), Expect = 3e-91 Identities = 251/277 (90%) Strand = Plus / Minus Query: 173 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 232 ||||||||||||| || || ||||||||||||| |||| |||||||||||||||||||| Sbjct: 702 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 643 Query: 233 cggccttgacgcggagcttcgccagctgctttctcctgtcgtacgagaccttggccttct 292 | |||||||| || ||||||||||| ||||| |||||||| || | ||||||||||||| Sbjct: 642 cagccttgacacgcagcttcgccagttgcttcctcctgtcataggcaaccttggccttct 583 Query: 293 ccttcctcttttcctccagctccctgatggtgtcggcgtagttccatccgacctccttgg 352 |||||||||| ||||| ||||||||||||||||| ||||||||| || |||||||||| Sbjct: 582 ccttcctcttctcctcaagctccctgatggtgtcatagtagttccagccaacctccttgg 523 Query: 353 agagctggcccaggaggcagtacctctgcccaggctgcagcctcagaaccttgagcgcgt 412 |||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct: 522 agagctggccgaggaggcagtacttgtgcccaggctgcagcctcagaaccttgagcgcgt 463 Query: 413 cgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 |||| |||||||||||||||||||||||||||||||| Sbjct: 462 cggggatgaccatgcgcttggtcctgtcgtacggcgg 426 Score = 46.1 bits (23), Expect = 0.098 Identities = 45/51 (88%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 21 tagaaaatttcaaatgagggtagcagaact-gcatgcataacaaaggttta 70 ||||||||||||||| | ||||||||||| | ||||||||||| |||||| Sbjct: 848 tagaaaatttcaaataggagtagcagaactgggatgcataacaacggttta 798
>dbj|AK103893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150E09, full insert sequence Length = 943 Score = 343 bits (173), Expect = 3e-91 Identities = 251/277 (90%) Strand = Plus / Minus Query: 173 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 232 ||||||||||||| || || ||||||||||||| |||| |||||||||||||||||||| Sbjct: 702 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 643 Query: 233 cggccttgacgcggagcttcgccagctgctttctcctgtcgtacgagaccttggccttct 292 | |||||||| || ||||||||||| ||||| |||||||| || | ||||||||||||| Sbjct: 642 cagccttgacacgcagcttcgccagttgcttcctcctgtcataggcaaccttggccttct 583 Query: 293 ccttcctcttttcctccagctccctgatggtgtcggcgtagttccatccgacctccttgg 352 |||||||||| ||||| ||||||||||||||||| ||||||||| || |||||||||| Sbjct: 582 ccttcctcttctcctcaagctccctgatggtgtcatagtagttccagccaacctccttgg 523 Query: 353 agagctggcccaggaggcagtacctctgcccaggctgcagcctcagaaccttgagcgcgt 412 |||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct: 522 agagctggccgaggaggcagtacttgtgcccaggctgcagcctcagaaccttgagcgcgt 463 Query: 413 cgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 |||| |||||||||||||||||||||||||||||||| Sbjct: 462 cggggatgaccatgcgcttggtcctgtcgtacggcgg 426 Score = 46.1 bits (23), Expect = 0.098 Identities = 45/51 (88%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 21 tagaaaatttcaaatgagggtagcagaact-gcatgcataacaaaggttta 70 ||||||||||||||| | ||||||||||| | ||||||||||| |||||| Sbjct: 848 tagaaaatttcaaataggagtagcagaactgggatgcataacaacggttta 798
>gb|BT016389.1| Zea mays clone Contig222 mRNA sequence Length = 880 Score = 248 bits (125), Expect = 1e-62 Identities = 239/277 (86%) Strand = Plus / Minus Query: 173 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 232 |||| ||||| ||||| || ||||||| ||||| ||||||||||||||||||||||||| Sbjct: 678 agtacttgataggggcaagaatctccaactgagaccccaacttctcctcggctgccttct 619 Query: 233 cggccttgacgcggagcttcgccagctgctttctcctgtcgtacgagaccttggccttct 292 |||||||||| || ||||| |||| ||||| |||| ||||| | ||||||||||||| Sbjct: 618 cggccttgacacgcagcttggccaattgcttcttcctctcgtaggcaaccttggccttct 559 Query: 293 ccttcctcttttcctccagctccctgatggtgtcggcgtagttccatccgacctccttgg 352 |||||||||| ||||| || |||||||||||||| ||||||||| ||||||||||| | Sbjct: 558 ccttcctcttctcctcaagttccctgatggtgtcatggtagttccacccgacctccttag 499 Query: 353 agagctggcccaggaggcagtacctctgcccaggctgcagcctcagaaccttgagcgcgt 412 |||||| ||| |||||||||||| | || |||||||| |||||||||||||| || |||| Sbjct: 498 agagctcgccgaggaggcagtacttgtgtccaggctgtagcctcagaaccttaagagcgt 439 Query: 413 cgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 | || |||||||| ||||||||| ||||||||||||| Sbjct: 438 cagggatgaccatacgcttggtcttgtcgtacggcgg 402
>ref|XM_469811.1| Oryza sativa (japonica cultivar-group), mRNA Length = 947 Score = 196 bits (99), Expect = 4e-47 Identities = 126/135 (93%) Strand = Plus / Minus Query: 315 cctgatggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcagta 374 |||||||||||| ||||||||| || |||||||||||||||||||| ||||||||||| Sbjct: 399 cctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagta 340 Query: 375 cctctgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccatgcgcttggt 434 | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 339 cttgtgcccaggctgcagcctcagaaccttgagcgcgtcggggatgaccatgcgcttggt 280 Query: 435 cctgtcgtacggcgg 449 ||||||||||||||| Sbjct: 279 cctgtcgtacggcgg 265
>dbj|AK066603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071H21, full insert sequence Length = 2212 Score = 190 bits (96), Expect = 3e-45 Identities = 114/120 (95%) Strand = Plus / Minus Query: 330 gtagttccatccgacctccttggagagctggcccaggaggcagtacctctgcccaggctg 389 ||||||||| || |||||||||||||||||||| |||||||||||| | ||||||||||| Sbjct: 576 gtagttccagccaacctccttggagagctggccgaggaggcagtacttgtgcccaggctg 517 Query: 390 cagcctcagaaccttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 516 cagcctcagaaccttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtacggcgg 457
>gb|BT017778.1| Zea mays clone EL01N0503C05.c mRNA sequence Length = 826 Score = 172 bits (87), Expect = 6e-40 Identities = 174/203 (85%) Strand = Plus / Minus Query: 247 agcttcgccagctgctttctcctgtcgtacgagaccttggccttctccttcctcttttcc 306 ||||| ||||||||||| ||||| || || | ||||| ||||||||||||||||| ||| Sbjct: 593 agcttggccagctgcttcctcctctcataggccaccttagccttctccttcctcttctcc 534 Query: 307 tccagctccctgatggtgtcggcgtagttccatccgacctccttggagagctggcccagg 366 || ||||||||||||||||| ||||||||||||||||||||| || |||| || ||| Sbjct: 533 tcaagctccctgatggtgtcatggtagttccatccgacctccttagaaagctccccaagg 474 Query: 367 aggcagtacctctgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccatg 426 ||||||||| | || || || ||||||||||||||||| || ||||| || ||||||| | Sbjct: 473 aggcagtacttgtgtcctggttgcagcctcagaaccttaagagcgtcagggatgaccagg 414 Query: 427 cgcttggtcctgtcgtacggcgg 449 ||||||||| ||||||||||||| Sbjct: 413 cgcttggtcttgtcgtacggcgg 391
>ref|XM_476399.1| Oryza sativa (japonica cultivar-group), mRNA Length = 859 Score = 153 bits (77), Expect = 6e-34 Identities = 158/185 (85%) Strand = Plus / Minus Query: 259 tgctttctcctgtcgtacgagaccttggccttctccttcctcttttcctccagctccctg 318 ||||| ||||| ||||| | ||||| ||||||||||| ||||| ||||||| |||||| Sbjct: 617 tgcttcctcctctcgtatgcaaccttagccttctcctttctcttctcctccaattccctg 558 Query: 319 atggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcagtacctc 378 ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| | Sbjct: 557 atggtgtcgtggtagttccagccgacctccttggagagctggccgaggaggcagtacttg 498 Query: 379 tgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccatgcgcttggtcctg 438 || || ||||| || | ||||||||||| |||||||| | ||||||||||||||| | | Sbjct: 497 tggccgggctggaggcgaagaaccttgagggcgtcggggacgaccatgcgcttggtgcgg 438 Query: 439 tcgta 443 ||||| Sbjct: 437 tcgta 433
>ref|XM_506141.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1567_G09.119 mRNA Length = 863 Score = 153 bits (77), Expect = 6e-34 Identities = 158/185 (85%) Strand = Plus / Minus Query: 259 tgctttctcctgtcgtacgagaccttggccttctccttcctcttttcctccagctccctg 318 ||||| ||||| ||||| | ||||| ||||||||||| ||||| ||||||| |||||| Sbjct: 621 tgcttcctcctctcgtatgcaaccttagccttctcctttctcttctcctccaattccctg 562 Query: 319 atggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcagtacctc 378 ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| | Sbjct: 561 atggtgtcgtggtagttccagccgacctccttggagagctggccgaggaggcagtacttg 502 Query: 379 tgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccatgcgcttggtcctg 438 || || ||||| || | ||||||||||| |||||||| | ||||||||||||||| | | Sbjct: 501 tggccgggctggaggcgaagaaccttgagggcgtcggggacgaccatgcgcttggtgcgg 442 Query: 439 tcgta 443 ||||| Sbjct: 441 tcgta 437
>dbj|AK103048.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117G12, full insert sequence Length = 859 Score = 153 bits (77), Expect = 6e-34 Identities = 158/185 (85%) Strand = Plus / Minus Query: 259 tgctttctcctgtcgtacgagaccttggccttctccttcctcttttcctccagctccctg 318 ||||| ||||| ||||| | ||||| ||||||||||| ||||| ||||||| |||||| Sbjct: 617 tgcttcctcctctcgtatgcaaccttagccttctcctttctcttctcctccaattccctg 558 Query: 319 atggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcagtacctc 378 ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| | Sbjct: 557 atggtgtcgtggtagttccagccgacctccttggagagctggccgaggaggcagtacttg 498 Query: 379 tgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccatgcgcttggtcctg 438 || || ||||| || | ||||||||||| |||||||| | ||||||||||||||| | | Sbjct: 497 tggccgggctggaggcgaagaaccttgagggcgtcggggacgaccatgcgcttggtgcgg 438 Query: 439 tcgta 443 ||||| Sbjct: 437 tcgta 433
>dbj|AK063806.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-G03, full insert sequence Length = 863 Score = 153 bits (77), Expect = 6e-34 Identities = 158/185 (85%) Strand = Plus / Minus Query: 259 tgctttctcctgtcgtacgagaccttggccttctccttcctcttttcctccagctccctg 318 ||||| ||||| ||||| | ||||| ||||||||||| ||||| ||||||| |||||| Sbjct: 621 tgcttcctcctctcgtatgcaaccttagccttctcctttctcttctcctccaattccctg 562 Query: 319 atggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcagtacctc 378 ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| | Sbjct: 561 atggtgtcgtggtagttccagccgacctccttggagagctggccgaggaggcagtacttg 502 Query: 379 tgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccatgcgcttggtcctg 438 || || ||||| || | ||||||||||| |||||||| | ||||||||||||||| | | Sbjct: 501 tggccgggctggaggcgaagaaccttgagggcgtcggggacgaccatgcgcttggtgcgg 442 Query: 439 tcgta 443 ||||| Sbjct: 441 tcgta 437
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 149 bits (75), Expect = 9e-33 Identities = 126/143 (88%) Strand = Plus / Minus Query: 173 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 232 ||||||||||||| || || ||||||||||||| |||| |||||||||||||||||||| Sbjct: 30901123 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 30901064 Query: 233 cggccttgacgcggagcttcgccagctgctttctcctgtcgtacgagaccttggccttct 292 | |||||||| || ||||||||||| ||||| |||||||| || | ||||||||||||| Sbjct: 30901063 cagccttgacacgcagcttcgccagttgcttcctcctgtcataggcaaccttggccttct 30901004 Query: 293 ccttcctcttttcctccagctcc 315 |||||||||| ||||| |||||| Sbjct: 30901003 ccttcctcttctcctcaagctcc 30900981 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 314 ccctgatggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcagt 373 ||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||| Sbjct: 30900146 ccctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagt 30900087 Query: 374 acctctgcccaggctgcagcctcagaacc 402 || | |||||||||||||||||||||||| Sbjct: 30900086 acttgtgcccaggctgcagcctcagaacc 30900058 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 314 ccctgatggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcagt 373 ||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||| Sbjct: 30886136 ccctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagt 30886195 Query: 374 acctctgcccaggctgcagcctcagaacc 402 || | |||||||||||||||||||||||| Sbjct: 30886196 acttgtgcccaggctgcagcctcagaacc 30886224 Score = 87.7 bits (44), Expect = 3e-14 Identities = 47/48 (97%) Strand = Plus / Minus Query: 402 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 30899966 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtacggcgg 30899919 Score = 87.7 bits (44), Expect = 3e-14 Identities = 47/48 (97%) Strand = Plus / Plus Query: 402 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 30886326 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtacggcgg 30886373 Score = 46.1 bits (23), Expect = 0.098 Identities = 45/51 (88%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 21 tagaaaatttcaaatgagggtagcagaact-gcatgcataacaaaggttta 70 ||||||||||||||| | ||||||||||| | ||||||||||| |||||| Sbjct: 30901269 tagaaaatttcaaataggagtagcagaactgggatgcataacaacggttta 30901219
>gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genomic sequence, complete sequence Length = 122496 Score = 149 bits (75), Expect = 9e-33 Identities = 126/143 (88%) Strand = Plus / Plus Query: 173 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 232 ||||||||||||| || || ||||||||||||| |||| |||||||||||||||||||| Sbjct: 41967 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 42026 Query: 233 cggccttgacgcggagcttcgccagctgctttctcctgtcgtacgagaccttggccttct 292 | |||||||| || ||||||||||| ||||| |||||||| || | ||||||||||||| Sbjct: 42027 cagccttgacacgcagcttcgccagttgcttcctcctgtcataggcaaccttggccttct 42086 Query: 293 ccttcctcttttcctccagctcc 315 |||||||||| ||||| |||||| Sbjct: 42087 ccttcctcttctcctcaagctcc 42109 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 314 ccctgatggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcagt 373 ||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||| Sbjct: 56954 ccctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagt 56895 Query: 374 acctctgcccaggctgcagcctcagaacc 402 || | |||||||||||||||||||||||| Sbjct: 56894 acttgtgcccaggctgcagcctcagaacc 56866 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 314 ccctgatggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcagt 373 ||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||| Sbjct: 42944 ccctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagt 43003 Query: 374 acctctgcccaggctgcagcctcagaacc 402 || | |||||||||||||||||||||||| Sbjct: 43004 acttgtgcccaggctgcagcctcagaacc 43032 Score = 87.7 bits (44), Expect = 3e-14 Identities = 47/48 (97%) Strand = Plus / Minus Query: 402 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 56764 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtacggcgg 56717 Score = 87.7 bits (44), Expect = 3e-14 Identities = 47/48 (97%) Strand = Plus / Plus Query: 402 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 43124 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtacggcgg 43171 Score = 46.1 bits (23), Expect = 0.098 Identities = 45/51 (88%), Gaps = 1/51 (1%) Strand = Plus / Plus Query: 21 tagaaaatttcaaatgagggtagcagaact-gcatgcataacaaaggttta 70 ||||||||||||||| | ||||||||||| | ||||||||||| |||||| Sbjct: 41821 tagaaaatttcaaataggagtagcagaactgggatgcataacaacggttta 41871
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 149 bits (75), Expect = 9e-33 Identities = 126/143 (88%) Strand = Plus / Minus Query: 173 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 232 ||||||||||||| || || ||||||||||||| |||| |||||||||||||||||||| Sbjct: 30991646 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 30991587 Query: 233 cggccttgacgcggagcttcgccagctgctttctcctgtcgtacgagaccttggccttct 292 | |||||||| || ||||||||||| ||||| |||||||| || | ||||||||||||| Sbjct: 30991586 cagccttgacacgcagcttcgccagttgcttcctcctgtcataggcaaccttggccttct 30991527 Query: 293 ccttcctcttttcctccagctcc 315 |||||||||| ||||| |||||| Sbjct: 30991526 ccttcctcttctcctcaagctcc 30991504 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 314 ccctgatggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcagt 373 ||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||| Sbjct: 30990669 ccctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagt 30990610 Query: 374 acctctgcccaggctgcagcctcagaacc 402 || | |||||||||||||||||||||||| Sbjct: 30990609 acttgtgcccaggctgcagcctcagaacc 30990581 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 314 ccctgatggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcagt 373 ||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||| Sbjct: 30976659 ccctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagt 30976718 Query: 374 acctctgcccaggctgcagcctcagaacc 402 || | |||||||||||||||||||||||| Sbjct: 30976719 acttgtgcccaggctgcagcctcagaacc 30976747 Score = 87.7 bits (44), Expect = 3e-14 Identities = 47/48 (97%) Strand = Plus / Minus Query: 402 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 30990489 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtacggcgg 30990442 Score = 87.7 bits (44), Expect = 3e-14 Identities = 47/48 (97%) Strand = Plus / Plus Query: 402 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 30976849 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtacggcgg 30976896 Score = 46.1 bits (23), Expect = 0.098 Identities = 45/51 (88%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 21 tagaaaatttcaaatgagggtagcagaact-gcatgcataacaaaggttta 70 ||||||||||||||| | ||||||||||| | ||||||||||| |||||| Sbjct: 30991792 tagaaaatttcaaataggagtagcagaactgggatgcataacaacggttta 30991742
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence Length = 142376 Score = 141 bits (71), Expect = 2e-30 Identities = 125/143 (87%) Strand = Plus / Minus Query: 173 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 232 |||||||||||||||| || ||||||||||||| ||||| |||||||||||||| ||||| Sbjct: 70475 agtatttgatcggggcaagaatctccagctgagatcccagcttctcctcggctgtcttct 70416 Query: 233 cggccttgacgcggagcttcgccagctgctttctcctgtcgtacgagaccttggccttct 292 | |||||||| || ||||| ||||| ||||| ||||| || || | ||||||||||||| Sbjct: 70415 cagccttgacacgcagcttggccagttgcttcctcctctcataggcaaccttggccttct 70356 Query: 293 ccttcctcttttcctccagctcc 315 |||||||||| ||||| |||||| Sbjct: 70355 ccttcctcttctcctcaagctcc 70333 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 314 ccctgatggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcagt 373 ||||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||||| Sbjct: 69554 ccctgatggtgtcatggtagttccatccgacctccttagagagctcgccgaggaggcagt 69495 Query: 374 acctctgcccaggctgcagcctcagaacc 402 || | |||||||||||||||||||||||| Sbjct: 69494 acttgtgcccaggctgcagcctcagaacc 69466 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 409 gcgtcgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 ||||| || ||||||| |||||||||| ||||||||||||| Sbjct: 69361 gcgtcagggatgaccacgcgcttggtcttgtcgtacggcgg 69321
>gb|AY109365.1| Zea mays CL4861_1 mRNA sequence Length = 1506 Score = 137 bits (69), Expect = 3e-29 Identities = 120/137 (87%) Strand = Plus / Minus Query: 313 tccctgatggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcag 372 |||||||||||||| ||||||||| ||||||||||| ||||||| ||| ||||||||| Sbjct: 1026 tccctgatggtgtcatggtagttccacccgacctccttagagagctcgccgaggaggcag 967 Query: 373 tacctctgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccatgcgcttg 432 ||| | || |||||||| |||||||||||||| || ||||| || |||||||| |||||| Sbjct: 966 tacttgtgtccaggctgtagcctcagaaccttaagagcgtcagggatgaccatacgcttg 907 Query: 433 gtcctgtcgtacggcgg 449 ||| ||||||||||||| Sbjct: 906 gtcttgtcgtacggcgg 890 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 173 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 232 |||| ||||| ||||| || ||||||| ||||| ||||||||||||||||||||||||| Sbjct: 1166 agtacttgataggggcaagaatctccaactgagaccccaacttctcctcggctgccttct 1107 Query: 233 cggccttgacgcggagcttcgcca 256 |||||||||| || ||||| |||| Sbjct: 1106 cggccttgacacgcagcttggcca 1083
>gb|AY013245.2| Oryza sativa (japonica cultivar-group) chromosome 3 BAC 36I5, partial sequence Length = 65547 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 314 ccctgatggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcagt 373 ||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||| Sbjct: 54980 ccctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagt 54921 Query: 374 acctctgcccaggctgcagcctcagaacc 402 || | |||||||||||||||||||||||| Sbjct: 54920 acttgtgcccaggctgcagcctcagaacc 54892 Score = 87.7 bits (44), Expect = 3e-14 Identities = 47/48 (97%) Strand = Plus / Minus Query: 402 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 54790 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtacggcgg 54743
>gb|AC146913.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0013C12 map near S6115, complete sequence Length = 123718 Score = 105 bits (53), Expect = 1e-19 Identities = 68/73 (93%) Strand = Plus / Minus Query: 330 gtagttccatccgacctccttggagagctggcccaggaggcagtacctctgcccaggctg 389 ||||||||| || |||||||||||||||||||| |||||||||||| | ||||||||||| Sbjct: 110430 gtagttccagccaacctccttggagagctggccgaggaggcagtacttgtgcccaggctg 110371 Query: 390 cagcctcagaacc 402 ||||||||||||| Sbjct: 110370 cagcctcagaacc 110358 Score = 87.7 bits (44), Expect = 3e-14 Identities = 47/48 (97%) Strand = Plus / Minus Query: 402 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 110257 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtacggcgg 110210
>gb|AC145327.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0095J10 map near S6115, complete sequence Length = 123717 Score = 105 bits (53), Expect = 1e-19 Identities = 68/73 (93%) Strand = Plus / Minus Query: 330 gtagttccatccgacctccttggagagctggcccaggaggcagtacctctgcccaggctg 389 ||||||||| || |||||||||||||||||||| |||||||||||| | ||||||||||| Sbjct: 15019 gtagttccagccaacctccttggagagctggccgaggaggcagtacttgtgcccaggctg 14960 Query: 390 cagcctcagaacc 402 ||||||||||||| Sbjct: 14959 cagcctcagaacc 14947 Score = 87.7 bits (44), Expect = 3e-14 Identities = 47/48 (97%) Strand = Plus / Minus Query: 402 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 14846 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtacggcgg 14799
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 105 bits (53), Expect = 1e-19 Identities = 68/73 (93%) Strand = Plus / Minus Query: 330 gtagttccatccgacctccttggagagctggcccaggaggcagtacctctgcccaggctg 389 ||||||||| || |||||||||||||||||||| |||||||||||| | ||||||||||| Sbjct: 12943094 gtagttccagccaacctccttggagagctggccgaggaggcagtacttgtgcccaggctg 12943035 Query: 390 cagcctcagaacc 402 ||||||||||||| Sbjct: 12943034 cagcctcagaacc 12943022 Score = 87.7 bits (44), Expect = 3e-14 Identities = 47/48 (97%) Strand = Plus / Minus Query: 402 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 12942921 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtacggcgg 12942874
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 105 bits (53), Expect = 1e-19 Identities = 68/73 (93%) Strand = Plus / Minus Query: 330 gtagttccatccgacctccttggagagctggcccaggaggcagtacctctgcccaggctg 389 ||||||||| || |||||||||||||||||||| |||||||||||| | ||||||||||| Sbjct: 13023301 gtagttccagccaacctccttggagagctggccgaggaggcagtacttgtgcccaggctg 13023242 Query: 390 cagcctcagaacc 402 ||||||||||||| Sbjct: 13023241 cagcctcagaacc 13023229 Score = 87.7 bits (44), Expect = 3e-14 Identities = 47/48 (97%) Strand = Plus / Minus Query: 402 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtacggcgg 449 ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 13023128 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtacggcgg 13023081
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Plus Query: 314 ccctgatggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcagt 373 |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 524124 ccctgatggtgtcgtggtagttccagccgacctccttggagagctggccgaggaggcagt 524183 Query: 374 ac 375 || Sbjct: 524184 ac 524185 Score = 44.1 bits (22), Expect = 0.39 Identities = 37/42 (88%) Strand = Plus / Plus Query: 402 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgta 443 |||||| |||||||| | ||||||||||||||| | |||||| Sbjct: 524288 cttgagggcgtcggggacgaccatgcgcttggtgcggtcgta 524329 Score = 40.1 bits (20), Expect = 6.0 Identities = 44/52 (84%) Strand = Plus / Plus Query: 259 tgctttctcctgtcgtacgagaccttggccttctccttcctcttttcctcca 310 ||||| ||||| ||||| | ||||| ||||||||||| ||||| ||||||| Sbjct: 523008 tgcttcctcctctcgtatgcaaccttagccttctcctttctcttctcctcca 523059
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0585H11 Length = 149371 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Plus Query: 314 ccctgatggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcagt 373 |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 126288 ccctgatggtgtcgtggtagttccagccgacctccttggagagctggccgaggaggcagt 126347 Query: 374 ac 375 || Sbjct: 126348 ac 126349 Score = 44.1 bits (22), Expect = 0.39 Identities = 37/42 (88%) Strand = Plus / Plus Query: 402 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgta 443 |||||| |||||||| | ||||||||||||||| | |||||| Sbjct: 126452 cttgagggcgtcggggacgaccatgcgcttggtgcggtcgta 126493 Score = 40.1 bits (20), Expect = 6.0 Identities = 44/52 (84%) Strand = Plus / Plus Query: 259 tgctttctcctgtcgtacgagaccttggccttctccttcctcttttcctcca 310 ||||| ||||| ||||| | ||||| ||||||||||| ||||| ||||||| Sbjct: 125172 tgcttcctcctctcgtatgcaaccttagccttctcctttctcttctcctcca 125223
>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1567_G09 Length = 121388 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Plus Query: 314 ccctgatggtgtcggcgtagttccatccgacctccttggagagctggcccaggaggcagt 373 |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 78036 ccctgatggtgtcgtggtagttccagccgacctccttggagagctggccgaggaggcagt 78095 Query: 374 ac 375 || Sbjct: 78096 ac 78097 Score = 44.1 bits (22), Expect = 0.39 Identities = 37/42 (88%) Strand = Plus / Plus Query: 402 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgta 443 |||||| |||||||| | ||||||||||||||| | |||||| Sbjct: 78200 cttgagggcgtcggggacgaccatgcgcttggtgcggtcgta 78241 Score = 40.1 bits (20), Expect = 6.0 Identities = 44/52 (84%) Strand = Plus / Plus Query: 259 tgctttctcctgtcgtacgagaccttggccttctccttcctcttttcctcca 310 ||||| ||||| ||||| | ||||| ||||||||||| ||||| ||||||| Sbjct: 76920 tgcttcctcctctcgtatgcaaccttagccttctcctttctcttctcctcca 76971
>gb|AY498745.1| Capsicum annuum 60S ribosomal protein L13a (RpL13a) mRNA, complete cds Length = 797 Score = 61.9 bits (31), Expect = 2e-06 Identities = 95/115 (82%), Gaps = 1/115 (0%) Strand = Plus / Minus Query: 213 cttctcctcggctgccttctcggccttgacgcggagcttcgccagctgctttctcctgtc 272 |||||||||||| ||||| || ||||| || | ||| || ||||||||||||||||| || Sbjct: 644 cttctcctcggcagcctt-tcagccttaaccctgagtttggccagctgctttctcctctc 586 Query: 273 gtacgagaccttggccttctccttcctcttttcctccagctccctgatggtgtcg 327 || | ||||| ||| ||||||| ||||| ||||| |||||| |||| |||||| Sbjct: 585 ataagtgacctgggctctctcctttctcttgtcctcgagctccttgatagtgtcg 531
>gb|DQ200397.1| Solanum tuberosum clone 070F10 60S ribosomal protein L13a-like protein mRNA, complete cds Length = 848 Score = 60.0 bits (30), Expect = 7e-06 Identities = 93/114 (81%) Strand = Plus / Minus Query: 213 cttctcctcggctgccttctcggccttgacgcggagcttcgccagctgctttctcctgtc 272 ||||||||| || |||||||||||||| || | ||| || |||| |||||||||||| || Sbjct: 618 cttctcctcagcagccttctcggccttaaccctgagtttggccaactgctttctcctctc 559 Query: 273 gtacgagaccttggccttctccttcctcttttcctccagctccctgatggtgtc 326 ||| | |||| ||| ||||||| ||||| | ||| |||||| |||| ||||| Sbjct: 558 gtatgctacctgggctctctcctttctcttgttctcaagctccttgatagtgtc 505
>ref|NM_124253.2| Arabidopsis thaliana structural constituent of ribosome AT5G48760 mRNA, complete cds Length = 834 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 290 tctccttcctcttttcctccagctccctgatggtgtcg 327 |||||||||||||| |||||||||| ||||||||||| Sbjct: 538 tctccttcctctttgtctccagctccttgatggtgtcg 501
>ref|XM_509965.1| PREDICTED: Pan troglodytes similar to ribosomal protein L13a; 60S ribosomal protein L13a; 23 kD highly basic protein (LOC452925), mRNA Length = 581 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||||||||| |||||||| Sbjct: 416 cttggccttctccttcctcttctcctccag 387
>ref|XM_526928.1| PREDICTED: Pan troglodytes integrin alpha 2 (LOC471550), mRNA Length = 3000 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||||||||| |||||||| Sbjct: 2883 cttggccttctccttcctcttctcctccag 2854
>ref|XM_514152.1| PREDICTED: Pan troglodytes similar to ribosomal protein L13a; 60S ribosomal protein L13a; 23 kD highly basic protein (LOC457684), mRNA Length = 663 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||||||||| |||||||| Sbjct: 495 cttggccttctccttcctcttctcctccag 466
>gb|AC125807.9| Homo sapiens 12 BAC RP11-253E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131995 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||||||||| |||||||| Sbjct: 81648 cttggccttctccttcctcttctcctccag 81677
>gb|DQ099054.1| Arachis stenosperma clone AS1RN3B12 microsatellite sequence Length = 758 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 286 gccttctccttcctcttttcctccagctccctgatggtgtcggcgtagttccatccgacc 345 ||||||||||| ||||| | ||||||||| ||||||| ||| |||||||||||| ||| Sbjct: 169 gccttctcctttctcttcttctccagctcagtgatggtatcgtagtagttccatccaacc 228 Query: 346 tc 347 || Sbjct: 229 tc 230
>gb|AY090359.1| Arabidopsis thaliana AT5g48760/K24G6_9 mRNA, complete cds Length = 677 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 290 tctccttcctcttttcctccagctccctgatggtgtcg 327 |||||||||||||| |||||||||| ||||||||||| Sbjct: 531 tctccttcctctttgtctccagctccttgatggtgtcg 494
>gb|AC020750.4| Homo sapiens chromosome 3 clone RP11-105H19 map 3p, complete sequence Length = 156933 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||||||||| |||||||| Sbjct: 95042 cttggccttctccttcctcttctcctccag 95013
>gb|AY088191.1| Arabidopsis thaliana clone 4275 mRNA, complete sequence Length = 814 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 290 tctccttcctcttttcctccagctccctgatggtgtcg 327 |||||||||||||| |||||||||| ||||||||||| Sbjct: 531 tctccttcctctttgtctccagctccttgatggtgtcg 494
>gb|AY122902.1| Arabidopsis thaliana At5g48760/K24G6_9 mRNA, complete cds Length = 621 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 290 tctccttcctcttttcctccagctccctgatggtgtcg 327 |||||||||||||| |||||||||| ||||||||||| Sbjct: 502 tctccttcctctttgtctccagctccttgatggtgtcg 465
>gb|AC083855.3| Homo sapiens chromosome 3 clone RP11-622I12 map 3p, complete sequence Length = 190861 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||||||||| |||||||| Sbjct: 188727 cttggccttctccttcctcttctcctccag 188756
>gb|AC003072.1|AC003072 Human BAC clone CTA-963H5 from 22q12.1-qter, complete sequence Length = 39401 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||||||||| |||||||| Sbjct: 2080 cttggccttctccttcctcttctcctccag 2109
>gb|U18488.1|STU18488 Salmo trutta transplantation antigen mRNA, partial cds Length = 621 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctcca 310 ||||||||||||||||||||| ||||||| Sbjct: 455 cttggccttctccttcctcttctcctcca 427
>dbj|AB049716.1| Pisum sativum ssa-6 mRNA for putative senescence-associated protein, complete cds Length = 918 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 291 ctccttcctcttttcctccagctccctgatggtgtcggcgtagttccatccgacctc 347 |||||||||||| | ||||| |||| ||||||||||| ||| |||||||| ||||| Sbjct: 494 ctccttcctcttcttctccaactccttgatggtgtcgtagtaattccatcccacctc 438
>gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, complete sequence Length = 159182 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 86 taacacagagttaccaaactactt 109 |||||||||||||||||||||||| Sbjct: 85840 taacacagagttaccaaactactt 85817
>gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome 8, complete sequence Length = 176667 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Plus Query: 86 taacacagagttaccaaactactt 109 |||||||||||||||||||||||| Sbjct: 144654 taacacagagttaccaaactactt 144677
>gb|AC156572.3| Mus musculus BAC clone RP23-216C6 from chromosome 13, complete sequence Length = 208578 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Minus Query: 287 ccttctccttcctcttttcctcc 309 ||||||||||||||||||||||| Sbjct: 164552 ccttctccttcctcttttcctcc 164530
>gb|AC068898.8| Homo sapiens chromosome 10 clone RP11-534L6, complete sequence Length = 176188 Score = 46.1 bits (23), Expect = 0.098 Identities = 26/27 (96%) Strand = Plus / Plus Query: 285 ggccttctccttcctcttttcctccag 311 |||||||||||||||||| |||||||| Sbjct: 137634 ggccttctccttcctcttctcctccag 137660
>gb|AC035139.11| Homo sapiens chromosome 10 clone RP11-563N6, complete sequence Length = 210472 Score = 46.1 bits (23), Expect = 0.098 Identities = 26/27 (96%) Strand = Plus / Plus Query: 285 ggccttctccttcctcttttcctccag 311 |||||||||||||||||| |||||||| Sbjct: 1517 ggccttctccttcctcttctcctccag 1543
>gb|AC022533.10| Homo sapiens chromosome 10 clone RP11-230D19, complete sequence Length = 174569 Score = 46.1 bits (23), Expect = 0.098 Identities = 26/27 (96%) Strand = Plus / Minus Query: 285 ggccttctccttcctcttttcctccag 311 |||||||||||||||||| |||||||| Sbjct: 136041 ggccttctccttcctcttctcctccag 136015
>gb|AC161811.6| Mus musculus chromosome 5, clone RP23-456E9, complete sequence Length = 163565 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Minus Query: 287 ccttctccttcctcttttcctcc 309 ||||||||||||||||||||||| Sbjct: 6106 ccttctccttcctcttttcctcc 6084
>emb|CT030185.11| Mouse DNA sequence from clone RP23-204L16 on chromosome 13, complete sequence Length = 116416 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 287 ccttctccttcctcttttcctcc 309 ||||||||||||||||||||||| Sbjct: 67988 ccttctccttcctcttttcctcc 68010
>gb|AC138365.16| Mus musculus chromosome 5, clone RP23-262B5, complete sequence Length = 172631 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 287 ccttctccttcctcttttcctcc 309 ||||||||||||||||||||||| Sbjct: 122336 ccttctccttcctcttttcctcc 122358
>ref|XM_520729.1| PREDICTED: Pan troglodytes similar to ribosomal protein L13a; 60S ribosomal protein L13a; 23 kD highly basic protein (LOC465277), mRNA Length = 662 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 |||||| |||||||||||||| |||||||| Sbjct: 514 cttggctttctccttcctcttctcctccag 485
>ref|XM_508935.1| PREDICTED: Pan troglodytes similar to ribosomal protein L13a; 60S ribosomal protein L13a; 23 kD highly basic protein (LOC451757), mRNA Length = 690 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||| ||||| |||||||| Sbjct: 423 cttggccttctcctttctcttctcctccag 394
>gb|DQ216006.1| Taeniopygia guttata clone 0061P0024G09 ribosomal protein L13A-like mRNA, complete sequence Length = 786 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||||| ||| |||||||| Sbjct: 499 cttggccttctccttccgcttctcctccag 470
>gb|DQ216003.1| Taeniopygia guttata clone 0058P0045E08 ribosomal protein L13A-like mRNA, complete sequence Length = 801 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||||| ||| |||||||| Sbjct: 528 cttggccttctccttccgcttctcctccag 499
>gb|DQ216001.1| Taeniopygia guttata clone 0058P0049C02 ribosomal protein L13A-like mRNA, complete sequence Length = 801 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||||| ||| |||||||| Sbjct: 528 cttggccttctccttccgcttctcctccag 499
>ref|XM_526130.1| PREDICTED: Pan troglodytes similar to APG7 autophagy 7-like; ubiquitin activating enzyme E1-like protein (LOC470747), mRNA Length = 2091 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 282 cttggccttctccttcctcttttcctccag 311 |||||||||||| |||||||| |||||||| Sbjct: 169 cttggccttctcattcctcttctcctccag 198
>gb|AC167134.5| Mus musculus chromosome 1, clone RP23-59E7, complete sequence Length = 140039 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 287 ccttctccttcctcttttcctc 308 |||||||||||||||||||||| Sbjct: 36545 ccttctccttcctcttttcctc 36566
>ref|XM_533620.2| PREDICTED: Canis familiaris Ribosomal protein L13a (RPL13A), mRNA Length = 525 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||| ||||||||| |||||||| Sbjct: 372 cttggccttcttcttcctcttctcctccag 343
>gb|BC043976.1| Xenopus laevis ribosomal protein L13a, mRNA (cDNA clone MGC:54018 IMAGE:5571546), complete cds Length = 819 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||| ||||| |||||||| Sbjct: 584 cttggccttctcctttctcttctcctccag 555
>gb|AC166831.3| Mus musculus BAC clone RP23-270P14 from chromosome 16, complete sequence Length = 230269 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttt 303 |||||||||||||||||||||| Sbjct: 45570 cttggccttctccttcctcttt 45549
>emb|AL391822.12| Human DNA sequence from clone RP11-494K3 on chromosome 1 Contains the 3' end of the gene for neurofascin (NFASC) and a ribosomal protein L13a (RPL13A) pseudogene, complete sequence Length = 115292 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||| ||| |||||||||||||||| Sbjct: 35865 cttggccttttccctcctcttttcctccag 35836
>emb|AJ843089.1| Platichthys flesus mRNA for 60S ribosomal protein L13A (rpl13A gene) Length = 686 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||| ||||| |||||||| Sbjct: 522 cttggccttctcctttctcttctcctccag 493
>gb|BC067891.1| Homo sapiens cDNA clone MGC:87657 IMAGE:5271409, complete cds Length = 1488 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 |||||| |||||||||||||| |||||||| Sbjct: 431 cttggctttctccttcctcttctcctccag 402
>gb|AC092768.6| Homo sapiens chromosome 11, clone RP11-1149L18, complete sequence Length = 146364 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 282 cttggccttctccttcctcttttcctccag 311 |||||| |||||||||||||| |||||||| Sbjct: 2917 cttggctttctccttcctcttctcctccag 2946
>gb|BC103039.1| Bos taurus cDNA clone MGC:128198 IMAGE:7984430, complete cds Length = 679 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||| ||||| |||||||| Sbjct: 518 cttggccttctcctttctcttctcctccag 489
>gb|AC084878.12| Homo sapiens 12q BAC RP11-101K23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 135060 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 282 cttggccttctccttcctcttttcctccag 311 |||| |||||||||||||||| |||||||| Sbjct: 77781 cttgaccttctccttcctcttctcctccag 77810
>gb|AC098935.2| Homo sapiens chromosome 1 clone RP11-564A8, complete sequence Length = 192565 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||||| ||| |||||||| Sbjct: 60141 cttggccttctccttccacttctcctccag 60112
>gb|AC074250.6| Homo sapiens BAC clone RP11-622A1 from 4, complete sequence Length = 199331 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||| ||||||||| |||||||||||||| Sbjct: 37403 cttggtcttctcctttctcttttcctccag 37374
>ref|XM_936627.1| PREDICTED: Homo sapiens similar to ribosomal protein L13a (LOC647572), mRNA Length = 1466 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 |||||| |||||||||||||| |||||||| Sbjct: 430 cttggctttctccttcctcttctcctccag 401
>ref|XM_928691.1| PREDICTED: Homo sapiens similar to ribosomal protein L13a (LOC645683), mRNA Length = 1466 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 |||||| |||||||||||||| |||||||| Sbjct: 430 cttggctttctccttcctcttctcctccag 401
>gb|BC105558.1| Bos taurus cDNA clone IMAGE:8120112, with apparent retained intron Length = 2007 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||| ||||| |||||||| Sbjct: 1303 cttggccttctcctttctcttctcctccag 1274
>gb|AC129776.3| Mus musculus BAC clone RP23-197A15 from chromosome 16, complete sequence Length = 219345 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttt 303 |||||||||||||||||||||| Sbjct: 1434 cttggccttctccttcctcttt 1413
>ref|NG_002538.1| Homo sapiens ribosomal protein L13a pseudogene 2 (RPL13AP2) on chromosome 14 Length = 773 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcct 307 ||||||||||||||||||||| |||| Sbjct: 530 cttggccttctccttcctcttctcct 505
>gb|AC018523.9|AC018523 Homo sapiens chromosome , clone RP11-140L24, complete sequence Length = 166507 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 282 cttggccttctccttcctcttttcctccag 311 |||||| |||||||||||||| |||||||| Sbjct: 162299 cttggctttctccttcctcttctcctccag 162328
>gb|AC107675.13| Mus musculus chromosome 1, clone RP24-471N7, complete sequence Length = 127374 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 287 ccttctccttcctcttttcctc 308 |||||||||||||||||||||| Sbjct: 43714 ccttctccttcctcttttcctc 43693
>emb|AL157792.3|CNS01RG7 Human chromosome 14 DNA sequence BAC R-388M7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 194760 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 282 cttggccttctccttcctcttttcct 307 ||||||||||||||||||||| |||| Sbjct: 115340 cttggccttctccttcctcttctcct 115365
>emb|AL355773.4|CNS05TCO Human chromosome 14 DNA sequence BAC R-813I20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 216647 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 282 cttggccttctccttcctcttttcctccag 311 |||||| |||||||||||||| |||||||| Sbjct: 124955 cttggctttctccttcctcttctcctccag 124984
>emb|X56933.1|BTAPAS B.taurus mRNA, alternative polyadenylation signals Length = 1101 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctccag 311 ||||||||||||||| ||||| |||||||| Sbjct: 493 cttggccttctcctttctcttctcctccag 464
>gb|AY650304.1| Macaca fascicularis ribosomal protein L13A mRNA, partial cds Length = 462 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctcca 310 |||||| |||||||||||||| ||||||| Sbjct: 366 cttggctttctccttcctcttctcctcca 338
>ref|NM_111591.2| Arabidopsis thaliana structural constituent of ribosome AT3G07110 transcript variant AT3G07110.1 mRNA, complete cds Length = 881 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 292 tccttcctcttttcctccagctccctgatggtgtcggcgtagttccatccgac 344 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 564 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 512
>ref|NM_001016486.2| Xenopus tropicalis hypothetical protein LOC549240 (LOC549240), mRNA Length = 771 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctcca 310 ||||||||||||||| ||||| ||||||| Sbjct: 584 cttggccttctcctttctcttctcctcca 556
>ref|XM_418218.1| PREDICTED: Gallus gallus similar to chromosome 19 open reading frame 21 (LOC420097), mRNA Length = 2960 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 291 ctccttcctcttttcctccagctcc 315 |||||||||||| |||||||||||| Sbjct: 582 ctccttcctcttgtcctccagctcc 558
>gb|AC006043.1| Homo sapiens BAC clone RP11-538D15 from 7, complete sequence Length = 189036 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctctt 302 ||||||||||||||||||||| Sbjct: 115153 cttggccttctccttcctctt 115133
>ref|XM_673595.1| Plasmodium berghei strain ANKA hypothetical protein (PB000517.00.0) partial mRNA Length = 6858 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 26 aatttcaaatgagggtagcagaact 50 |||||||||||||||||||| |||| Sbjct: 966 aatttcaaatgagggtagcacaact 990
>emb|BX000688.11| Human DNA sequence from clone DAQB-36F16 on chromosome 6 Contains the GPR53P pseudogene for G protein-coupled receptor 53, the OR2I1P pseudogene for olfactory receptor, family 2, subfamily I, member 1, the UBD gene for ubiquitin D, the OR2H5P pseudogene for olfactory receptor, family 2, subfamily H, member 5, the RPL13AP pseudogene for ribosomal protein L13a, the OR2H2 gene for olfactory receptor, family 2, subfamily H, member 2, the GABBR1 gene for gamma-aminobutyric acid (GABA) B receptor, 1, and 3 CpG islands, complete sequence Length = 102684 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctctt 302 ||||||||||||||||||||| Sbjct: 50599 cttggccttctccttcctctt 50579
>emb|AL662826.11| Human DNA sequence from clone XXbac-101I20 on chromosome 6 contains a MAS1 oncogene pseudogene, a olfactory receptor, family 2, subfamily I, member 1 pseudogene (OR2I1P, HS6M1-14P), the UBD gene for ubiquitin D (FAT10), a olfactory receptor, family 2, subfamily H, member 5 pseudogene (OR2H5P, HS6M1-13P), a 60S ribosomal protein L13A (RPL13A) pseudogene, the OR2H2 gene for olfactory receptor, family 2, subfamily H, member 2 (HS6M1-12), the GABBR1 gene for gamma-aminobutryic acid (GABA) B receptor, 1 (GPRC3A, GABABR1), the 5' end of the MOG gene for myelin oligodendrocyte protein and three CpG islands, complete sequence Length = 145431 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctctt 302 ||||||||||||||||||||| Sbjct: 57020 cttggccttctccttcctctt 57000
>emb|AL645936.5| Human DNA sequence from clone XXbac-126D10 on chromosome 6 contains the OR2H2 gene for olfactory receptor, family 2, subfamily H, member 2, the OR2I1P and OR2H5P pseudogenes for olfactory receptor, family 2, subfamily I, member 1 and subfamily H, member 5, the UBD gene for ubiquitin D, a 60S ribosomal protein L13A (RPL13A) pseudogene, the GABBR1 gene for gamma-aminobutyric acid (GABA) B receptor, 1, a SMT3 suppressor of mif two 3 homolog 1 (SMT3H1) pseudogene, the MOG gene for myelin oligodendrocyte glycoprotein, the gene for a novel KRAB box-containing C2H2 type zinc finger protein and four CpG islands, complete sequence Length = 155874 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctctt 302 ||||||||||||||||||||| Sbjct: 33892 cttggccttctccttcctctt 33872
>emb|AL109827.8|HSJ309K20 Human DNA sequence from clone RP1-309K20 on chromosome 20 Contains the 5' end of the FER1L4 gene for fer-1-like 4 (C. elegans), the C20orf124 gene for chromosome 20 open reading frame 124, the SPAG4 gene for sperm associated antigen 4, the CPNE1 gene for copine I, the RBM12 gene for RNA binding motif protein 12, the 3' end of the NIFS gene for nitrogen fixation 1 (S. cerevisiae) and four CpG islands, complete sequence Length = 98599 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 ccttctccttcctcttttcct 307 ||||||||||||||||||||| Sbjct: 86556 ccttctccttcctcttttcct 86576
>emb|CR759766.5| Human DNA sequence from clone DAMA-BMC177C8 on chromosome 6, complete sequence Length = 127280 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctctt 302 ||||||||||||||||||||| Sbjct: 28918 cttggccttctccttcctctt 28898
>emb|AL645748.9| Mouse DNA sequence from clone RP23-241E24 on chromosome 13 Contains a CpG island, complete sequence Length = 58318 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 293 ccttcctcttttcctccagctccct 317 ||||||||||||||||||| ||||| Sbjct: 6190 ccttcctcttttcctccaggtccct 6214
>emb|CR759870.6| Human DNA sequence from clone DADB-225M10 on chromosome 6, complete sequence Length = 57743 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctctt 302 ||||||||||||||||||||| Sbjct: 5744 cttggccttctccttcctctt 5724
>emb|CR788300.6| Human DNA sequence from clone DAAP-188P13 on chromosome 6, complete sequence Length = 78908 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctctt 302 ||||||||||||||||||||| Sbjct: 54303 cttggccttctccttcctctt 54283
>gb|AC161626.6| Pan troglodytes BAC clone CH251-114C24 from chromosome unknown, complete sequence Length = 167136 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 ccttctccttcctcttttcct 307 ||||||||||||||||||||| Sbjct: 139866 ccttctccttcctcttttcct 139886
>gb|AY114589.1| Arabidopsis thaliana putative 60S ribosomal protein L13A (At3g07110) mRNA, complete cds Length = 667 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 292 tccttcctcttttcctccagctccctgatggtgtcggcgtagttccatccgac 344 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 500 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 448
>gb|DP000062.1| Sus scrofa target 117 genomic scaffold Length = 605739 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctctt 302 ||||||||||||||||||||| Sbjct: 206963 cttggccttctccttcctctt 206943
>gb|AC092867.7| Homo sapiens 12p BAC RP11-100C20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 195583 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 ggcagtacctctgcccaggct 388 ||||||||||||||||||||| Sbjct: 98640 ggcagtacctctgcccaggct 98620
>gb|AC023796.22| Homo sapiens 12p BAC RP11-625L16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173342 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 ggcagtacctctgcccaggct 388 ||||||||||||||||||||| Sbjct: 122430 ggcagtacctctgcccaggct 122410
>ref|NM_203308.1| Homo sapiens ribosomal protein L13A-like (MGC34774), mRNA Length = 1848 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctctt 302 ||||||||||||||||||||| Sbjct: 1096 cttggccttctccttcctctt 1076
>gb|AY062793.1| Arabidopsis thaliana putative 60S ribosomal protein L13A (At3g07110; T1B9.24) mRNA, complete cds Length = 811 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 292 tccttcctcttttcctccagctccctgatggtgtcggcgtagttccatccgac 344 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 563 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 511
>gb|AC006137.3|AC006137 Homo sapiens clone SCb-254N2 (UWGC:rg254N02) from 6p21, complete sequence Length = 129806 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 cttggccttctccttcctctt 302 ||||||||||||||||||||| Sbjct: 74304 cttggccttctccttcctctt 74324
>emb|BX927223.9| Human DNA sequence from clone DAMA-380P17 on chromosome 6, complete sequence Length = 83649 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctctt 302 ||||||||||||||||||||| Sbjct: 76920 cttggccttctccttcctctt 76900
>gb|AY057551.1| Arabidopsis thaliana AT3g07110/T1B9_24 mRNA, complete cds Length = 831 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 292 tccttcctcttttcctccagctccctgatggtgtcggcgtagttccatccgac 344 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 563 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 511
>dbj|AB168305.1| Macaca fascicularis testis cDNA clone: QtsA-11103, similar to human ribosomal protein L13a (RPL13A), mRNA, RefSeq: NM_012423.2 Length = 680 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctcca 310 |||||| |||||||||||||| ||||||| Sbjct: 517 cttggctttctccttcctcttctcctcca 489
>gb|AC091989.3| Homo sapiens chromosome 5 clone RP11-76H13, complete sequence Length = 168575 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 ttctccttcctcttttcctcc 309 ||||||||||||||||||||| Sbjct: 89242 ttctccttcctcttttcctcc 89262
>gb|AF325041.2|AF325041 Arabidopsis thaliana AT3g07110 (AT3g07110/T1B9_24) mRNA, complete cds Length = 829 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 292 tccttcctcttttcctccagctccctgatggtgtcggcgtagttccatccgac 344 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 563 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 511
>gb|AC148698.1| Macaca mulatta Major Histocompatibility Complex BAC MMU268P23, complete sequence Length = 185838 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctctt 302 ||||||||||||||||||||| Sbjct: 9142 cttggccttctccttcctctt 9122
>gb|AC148689.1| Macaca mulatta Major Histocompatibility Complex BAC MMU222I18, complete sequence Length = 174202 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctctt 302 ||||||||||||||||||||| Sbjct: 106204 cttggccttctccttcctctt 106184
>emb|BX822336.1|CNS0A5ZO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB2ZC08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 788 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 292 tccttcctcttttcctccagctccctgatggtgtcggcgtagttccatccgac 344 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 547 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 495
>emb|BX824368.1|CNS0A5OL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH43ZE05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 800 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 292 tccttcctcttttcctccagctccctgatggtgtcggcgtagttccatccgac 344 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 541 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 489
>emb|BX822519.1|CNS0A5UA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB45ZA10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 781 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 292 tccttcctcttttcctccagctccctgatggtgtcggcgtagttccatccgac 344 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 525 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 473
>emb|BX822098.1|CNS0A5TD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB12ZA04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 660 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 292 tccttcctcttttcctccagctccctgatggtgtcggcgtagttccatccgac 344 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 415 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 363
>gb|AY855164.1| Callithrix jacchus RPGR mRNA, partial cds Length = 1818 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 287 ccttctccttcctcttttcct 307 ||||||||||||||||||||| Sbjct: 554 ccttctccttcctcttttcct 534
>gb|BC027852.1| Homo sapiens ribosomal protein L13A-like, mRNA (cDNA clone MGC:34774 IMAGE:5207622), complete cds Length = 1848 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctctt 302 ||||||||||||||||||||| Sbjct: 1096 cttggccttctccttcctctt 1076
>emb|CR760846.2| Xenopus tropicalis finished cDNA, clone TTpA004d22 Length = 771 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 282 cttggccttctccttcctcttttcctcca 310 ||||||||||||||| ||||| ||||||| Sbjct: 584 cttggccttctcctttctcttctcctcca 556
>emb|AL031983.2|HS271M21 Human DNA sequence from clone RP1-271M21 on chromosome 6p21.31-22.2 Contains a MAS1 oncogene pseudogene, the OR2H2 gene for olfactory receptor 2H2, olfactory receptor 2I1 and 2H5 pseudogenes OR2I1P and OR2H5P, the gene for diubiquitin, an RPL13A (60S Ribosomal Protein L13A) pseudogene, the GABBR1 gene for gamma-aminobutyric acid (GABA) B receptor 1 and an SMT3H1 or SMT3H2 (SMT3 (suppressor of mif two 3, yeast) homolog) pseudogene and three CpG islands, complete sequence Length = 134292 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctctt 302 ||||||||||||||||||||| Sbjct: 79300 cttggccttctccttcctctt 79280
>gb|AC099743.3| Papio anubis clone RP41-450I16, complete sequence Length = 115022 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ttctccttcctcttttcctc 308 |||||||||||||||||||| Sbjct: 71049 ttctccttcctcttttcctc 71030
>gb|AC115061.20| Mus musculus chromosome 1, clone RP24-399G3, complete sequence Length = 203058 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 ctccttcctcttttcctcca 310 |||||||||||||||||||| Sbjct: 159848 ctccttcctcttttcctcca 159867
>gb|AC126115.5| Rattus norvegicus 4 BAC CH230-213L22 (Children's Hospital Oakland Research Institute) complete sequence Length = 214442 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cttctccttcctcttttcct 307 |||||||||||||||||||| Sbjct: 190669 cttctccttcctcttttcct 190650
>gb|AY168655.3| Porella platyphylla tRNA-Lys (trnK) gene, intron; chloroplast Length = 2117 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tcctccagctccctgatggt 323 |||||||||||||||||||| Sbjct: 549 tcctccagctccctgatggt 530
>gb|BC052385.1| Mus musculus chromodomain helicase DNA binding protein 1-like, mRNA (cDNA clone MGC:57944 IMAGE:5703859), complete cds Length = 3018 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 287 ccttctccttcctcttttcctcca 310 |||||||||||||||| ||||||| Sbjct: 2014 ccttctccttcctcttctcctcca 1991
>ref|XM_952952.1| Neurospora crassa OR74A hypothetical protein (NCU06939.1) partial mRNA Length = 1905 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 ctccagctccctgatggtgt 325 |||||||||||||||||||| Sbjct: 1407 ctccagctccctgatggtgt 1388
>ref|XM_327224.1| Neurospora crassa OR74A hypothetical protein (NCU06939.1) partial mRNA Length = 1905 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 ctccagctccctgatggtgt 325 |||||||||||||||||||| Sbjct: 1407 ctccagctccctgatggtgt 1388
>ref|NM_026539.1| Mus musculus chromodomain helicase DNA binding protein 1-like (Chd1l), mRNA Length = 2991 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 287 ccttctccttcctcttttcctcca 310 |||||||||||||||| ||||||| Sbjct: 2032 ccttctccttcctcttctcctcca 2009
>gb|AC146171.2| Pan troglodytes BAC clone RP43-24K1 from 7, complete sequence Length = 131575 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ttctccttcctcttttcctc 308 |||||||||||||||||||| Sbjct: 90410 ttctccttcctcttttcctc 90391
>ref|XR_002787.1| PREDICTED: Mus musculus similar to ribosomal protein L13a (LOC624863), mRNA Length = 632 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 280 accttggccttctccttcctcttttcctccag 311 ||||||||||||||||||| || |||||||| Sbjct: 517 accttggccttctccttccgtttctcctccag 486
>ref|XR_004732.1| PREDICTED: Mus musculus similar to ribosomal protein L13a (LOC624863), mRNA Length = 632 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 280 accttggccttctccttcctcttttcctccag 311 ||||||||||||||||||| || |||||||| Sbjct: 517 accttggccttctccttccgtttctcctccag 486
>gb|AC146025.2| Pan troglodytes BAC clone RP43-119E9 from 7, complete sequence Length = 156630 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ttctccttcctcttttcctc 308 |||||||||||||||||||| Sbjct: 5631 ttctccttcctcttttcctc 5650
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 401 ccttgagcgcgtcgggaatgacca 424 ||||||||| |||||||||||||| Sbjct: 4970943 ccttgagcgtgtcgggaatgacca 4970966
>ref|XM_568754.1| Cryptococcus neoformans var. neoformans JEC21 exonuclease (CNB00080) partial mRNA Length = 3126 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 cttggccttctccttcctct 301 |||||||||||||||||||| Sbjct: 2118 cttggccttctccttcctct 2099
>gb|AC130541.4| Mus musculus BAC clone RP24-124P9 from chromosome 3, complete sequence Length = 191814 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 287 ccttctccttcctcttttcctcca 310 |||||||||||||||| ||||||| Sbjct: 25560 ccttctccttcctcttctcctcca 25583
>gb|AC134901.4| Mus musculus BAC clone RP23-287E23 from chromosome 18, complete sequence Length = 188224 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ccttctccttcctcttttcc 306 |||||||||||||||||||| Sbjct: 141000 ccttctccttcctcttttcc 141019
>gb|AC122213.4| Mus musculus BAC clone RP23-104C8 from chromosome 18, complete sequence Length = 188125 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ccttctccttcctcttttcc 306 |||||||||||||||||||| Sbjct: 5787 ccttctccttcctcttttcc 5806
>gb|BC020486.1| Mus musculus chromodomain helicase DNA binding protein 1-like, mRNA (cDNA clone IMAGE:3708149) Length = 1179 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 287 ccttctccttcctcttttcctcca 310 |||||||||||||||| ||||||| Sbjct: 202 ccttctccttcctcttctcctcca 179
>gb|AC099668.2| Homo sapiens chromosome 3 clone RP11-901L6, complete sequence Length = 242222 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tcctccagctccctgatggt 323 |||||||||||||||||||| Sbjct: 238116 tcctccagctccctgatggt 238097
>gb|AC127369.4| Mus musculus BAC clone RP23-26A15 from 8, complete sequence Length = 211411 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 gagagctggcccaggaggca 371 |||||||||||||||||||| Sbjct: 116657 gagagctggcccaggaggca 116638
>gb|AC131652.2| Mus musculus BAC clone RP23-216A20 from 16, complete sequence Length = 184989 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cttcctcttttcctccagct 313 |||||||||||||||||||| Sbjct: 16646 cttcctcttttcctccagct 16627
>gb|AC121768.2| Mus musculus BAC clone RP23-339H16 from 15, complete sequence Length = 199607 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 gccttctccttcctcttttcctcc 309 ||||||||||||||||| |||||| Sbjct: 60994 gccttctccttcctcttctcctcc 61017
>emb|CR727990.2|CNS0GONW Tetraodon nigroviridis full-length cDNA Length = 1347 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cttctccttcctcttttcctccag 311 |||||||||||||| ||||||||| Sbjct: 244 cttctccttcctctcttcctccag 221
>gb|AC073424.8| Homo sapiens BAC clone RP11-653O17 from 7, complete sequence Length = 191141 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 tggagagctggcccaggagg 369 |||||||||||||||||||| Sbjct: 7059 tggagagctggcccaggagg 7078
>gb|AC112926.7| Mus musculus chromosome 3, clone RP23-215M7, complete sequence Length = 222106 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 tcttttcctccagctccctg 318 |||||||||||||||||||| Sbjct: 52046 tcttttcctccagctccctg 52065
>emb|Z93096.1|HS390B3 Human DNA sequence from clone CTA-390B3 on chromosome 22q12-13, complete sequence Length = 92510 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 ctccagctccctgatggtgt 325 |||||||||||||||||||| Sbjct: 3789 ctccagctccctgatggtgt 3808
>ref|XM_504032.1| Yarrowia lipolytica CLIB122, YALI0E16665g predicted mRNA Length = 762 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 tctcctcggctgccttctcggcct 238 |||||| ||||||||||||||||| Sbjct: 574 tctccttggctgccttctcggcct 551
>gb|BC057567.1| Mus musculus chromodomain helicase DNA binding protein 1-like, mRNA (cDNA clone MGC:66868 IMAGE:6415898), complete cds Length = 3037 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 287 ccttctccttcctcttttcctcca 310 |||||||||||||||| ||||||| Sbjct: 2043 ccttctccttcctcttctcctcca 2020
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 cttggccttctccttcctct 301 |||||||||||||||||||| Sbjct: 20767 cttggccttctccttcctct 20786
>gb|AC104452.2| Homo sapiens chromosome 3 clone RP11-949J7, complete sequence Length = 186563 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tcctccagctccctgatggt 323 |||||||||||||||||||| Sbjct: 69300 tcctccagctccctgatggt 69281
>gb|AC183545.2| Pan troglodytes BAC clone CH251-233G24 from chromosome 19, complete sequence Length = 151627 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 293 ccttcctcttttcctccagctccc 316 |||| ||||||||||||||||||| Sbjct: 5164 ccttgctcttttcctccagctccc 5187
>gb|AC104232.5| Homo sapiens chromosome 8, clone RP11-1D12, complete sequence Length = 148933 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aacagttgaccaagtagaaa 26 |||||||||||||||||||| Sbjct: 119755 aacagttgaccaagtagaaa 119736
>ref|NM_079920.2| Drosophila melanogaster gomdanji CG6727-RA (gom), mRNA Length = 1286 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gaccttggccttctccttcc 298 |||||||||||||||||||| Sbjct: 951 gaccttggccttctccttcc 932
>gb|AC010265.5| Homo sapiens chromosome 5 clone CTC-470E21, complete sequence Length = 126619 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 gccttctccttcctcttttc 305 |||||||||||||||||||| Sbjct: 126394 gccttctccttcctcttttc 126413
>gb|AC104126.2| Homo sapiens chromosome 5 clone RP11-526F3, complete sequence Length = 187914 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 gccttctccttcctcttttc 305 |||||||||||||||||||| Sbjct: 146002 gccttctccttcctcttttc 145983
>dbj|AK165656.1| Mus musculus kidney CCL-142 RAG cDNA, RIKEN full-length enriched library, clone:G430108O15 product:chromodomain helicase DNA binding protein 1-like, full insert sequence Length = 2716 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 287 ccttctccttcctcttttcctcca 310 |||||||||||||||| ||||||| Sbjct: 2057 ccttctccttcctcttctcctcca 2034
>gb|AC060766.8| Homo sapiens chromosome 17, clone RP11-686D22, complete sequence Length = 169675 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 cttcctcttttcctccagct 313 |||||||||||||||||||| Sbjct: 72744 cttcctcttttcctccagct 72763
>gb|AC099019.1| Drosophila melanogaster, chromosome 2R, region 58C-58D, BAC clone BACR02O12, complete sequence Length = 171594 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gaccttggccttctccttcc 298 |||||||||||||||||||| Sbjct: 105322 gaccttggccttctccttcc 105341
>gb|AC073850.4| Homo sapiens BAC clone RP11-697H17 from 7, complete sequence Length = 183846 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ttctccttcctcttttcctc 308 |||||||||||||||||||| Sbjct: 84785 ttctccttcctcttttcctc 84804
>gb|AC182810.1| Gasterosteus aculeatus clone VMRC28-119K03, complete sequence Length = 131913 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tctccttcctcttttcctcc 309 |||||||||||||||||||| Sbjct: 85845 tctccttcctcttttcctcc 85826
>gb|AC121357.14| Mus musculus chromosome 15, clone RP23-56D7, complete sequence Length = 177867 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 280 accttggccttctccttcctcttttcctccag 311 ||||||||||||||||||| || |||||||| Sbjct: 124043 accttggccttctccttccgtttctcctccag 124074
>gb|S48758.1| cyclin B [goldfish, oocytes, mRNA, 1425 nt] Length = 1425 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 cagaggtttcccaaaactga 145 |||||||||||||||||||| Sbjct: 815 cagaggtttcccaaaactga 796
>gb|AC154231.2| Mus musculus BAC clone RP24-339I11 from chromosome 13, complete sequence Length = 141075 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tctccttcctcttttcctcc 309 |||||||||||||||||||| Sbjct: 128514 tctccttcctcttttcctcc 128495
>gb|BC066506.1| Danio rerio tropomyosin 1 (alpha), mRNA (cDNA clone MGC:77009 IMAGE:6805687), complete cds Length = 1719 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 tctcctcggctgccttctcggcct 238 |||| ||||||||||||||||||| Sbjct: 441 tctcatcggctgccttctcggcct 418
>gb|BC045504.1| Danio rerio tropomyosin 1 (alpha), mRNA (cDNA clone MGC:55951 IMAGE:3819329), complete cds Length = 1217 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 tctcctcggctgccttctcggcct 238 |||| ||||||||||||||||||| Sbjct: 436 tctcatcggctgccttctcggcct 413
>dbj|AK014473.1| Mus musculus 14 days embryo liver cDNA, RIKEN full-length enriched library, clone:4432404A22 product:CDNA FLJ10480 FIS, CLONE NT2RP2000126, WEAKLY SIMILAR TO POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L (FRAGMENT) homolog [Homo sapiens], full insert sequence Length = 2991 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 287 ccttctccttcctcttttcctcca 310 |||||||||||||||| ||||||| Sbjct: 2032 ccttctccttcctcttctcctcca 2009
>dbj|AK047492.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930078N17 product:unclassifiable, full insert sequence Length = 1577 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 gagagctggcccaggaggca 371 |||||||||||||||||||| Sbjct: 272 gagagctggcccaggaggca 253
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 ctccttcctcttttcctcca 310 |||||||||||||||||||| Sbjct: 11624105 ctccttcctcttttcctcca 11624124
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold Length = 1888123 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cttctccttcctcttttcct 307 |||||||||||||||||||| Sbjct: 198344 cttctccttcctcttttcct 198325
>gb|AC147097.3| Pan troglodytes BAC clone RP43-51D4 from chromosome 7, complete sequence Length = 192069 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ttctccttcctcttttcctc 308 |||||||||||||||||||| Sbjct: 113065 ttctccttcctcttttcctc 113084
>gb|AC017048.6| Homo sapiens BAC clone RP11-324L17 from 2, complete sequence Length = 186373 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 tctccttcctcttttcctcc 309 |||||||||||||||||||| Sbjct: 96960 tctccttcctcttttcctcc 96979
>gb|AC005539.1| Homo sapiens BAC clone RP11-335J18 from 2, complete sequence Length = 209613 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 ctccttcctcttttcctcca 310 |||||||||||||||||||| Sbjct: 11613 ctccttcctcttttcctcca 11632
>ref|XM_342921.2| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9330177P20 (LOC362602), mRNA Length = 2967 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 gctgccttctcggccttgac 242 |||||||||||||||||||| Sbjct: 2845 gctgccttctcggccttgac 2864
>gb|AC136603.3| Homo sapiens chromosome 16 clone RP11-133M8, complete sequence Length = 183708 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ggccttctccttcctctttt 304 |||||||||||||||||||| Sbjct: 132624 ggccttctccttcctctttt 132643
>gb|AC009141.7| Homo sapiens chromosome 16 clone RP11-543G23, complete sequence Length = 201716 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ggccttctccttcctctttt 304 |||||||||||||||||||| Sbjct: 60081 ggccttctccttcctctttt 60100
>gb|AF273495.1|AF273495 Carassius auratus cyclin B mRNA, complete cds Length = 1501 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 cagaggtttcccaaaactga 145 |||||||||||||||||||| Sbjct: 877 cagaggtttcccaaaactga 858
>emb|AL671536.8| Mouse DNA sequence from clone RP23-291O10 on chromosome X, complete sequence Length = 221255 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cttctccttcctcttttcct 307 |||||||||||||||||||| Sbjct: 171830 cttctccttcctcttttcct 171811
>gb|AF045470.1|AF045470 Drosophila melanogaster Gom (gom) mRNA, complete cds Length = 1248 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gaccttggccttctccttcc 298 |||||||||||||||||||| Sbjct: 951 gaccttggccttctccttcc 932
>gb|AC151896.3| Mus musculus BAC clone RP24-501F15 from 18, complete sequence Length = 189528 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 157 agctctgatctctcttagtatttg 180 |||||||||||||||| ||||||| Sbjct: 30953 agctctgatctctcttggtatttg 30976
>gb|AE003456.3| Drosophila melanogaster chromosome 2R, section 64 of 73 of the complete sequence Length = 288451 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gaccttggccttctccttcc 298 |||||||||||||||||||| Sbjct: 142904 gaccttggccttctccttcc 142885
>gb|AC140839.9| Mus musculus chromosome 3, clone RP24-316D12, complete sequence Length = 168722 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 287 ccttctccttcctcttttcctcca 310 |||||||||||||||| ||||||| Sbjct: 69068 ccttctccttcctcttctcctcca 69045
>gb|AC146916.3| Rattus norvegicus strain Brown Norway clone CH230-206L9, complete sequence Length = 215015 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cttctccttcctcttttcct 307 |||||||||||||||||||| Sbjct: 198344 cttctccttcctcttttcct 198325
>dbj|AP001972.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2562J17, complete sequences Length = 215225 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 agagctggcccaggaggcag 372 |||||||||||||||||||| Sbjct: 11483 agagctggcccaggaggcag 11464
>dbj|AP003175.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-158C6, complete sequence Length = 81000 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 agagctggcccaggaggcag 372 |||||||||||||||||||| Sbjct: 56273 agagctggcccaggaggcag 56254
>gb|AC154565.2| Mus musculus BAC clone RP23-403J19 from chromosome 16, complete sequence Length = 202981 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 cttcctcttttcctccagct 313 |||||||||||||||||||| Sbjct: 9546 cttcctcttttcctccagct 9565
>ref|NM_200934.2| Danio rerio tropomyosin 1 (alpha) (tpm1), mRNA Length = 1719 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 tctcctcggctgccttctcggcct 238 |||| ||||||||||||||||||| Sbjct: 441 tctcatcggctgccttctcggcct 418
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 ctccttcctcttttcctcca 310 |||||||||||||||||||| Sbjct: 11623776 ctccttcctcttttcctcca 11623795
>emb|AL772424.5|CNS08CA2 Oryza sativa chromosome 12, . BAC OJ1118_B01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 108927 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 ctccttcctcttttcctcca 310 |||||||||||||||||||| Sbjct: 36723 ctccttcctcttttcctcca 36704
>gb|AC003054.1|AC003054 Drosophila melanogaster DNA sequence (P1 DS04894 (D86)), complete sequence Length = 47334 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gaccttggccttctccttcc 298 |||||||||||||||||||| Sbjct: 22509 gaccttggccttctccttcc 22490
>gb|BC062966.1| Mus musculus chromodomain helicase DNA binding protein 1-like, mRNA (cDNA clone MGC:64788 IMAGE:6415898), complete cds Length = 3066 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 287 ccttctccttcctcttttcctcca 310 |||||||||||||||| ||||||| Sbjct: 2043 ccttctccttcctcttctcctcca 2020
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 tctcctcggctgccttctcggcct 238 |||||| ||||||||||||||||| Sbjct: 1975373 tctccttggctgccttctcggcct 1975350
>gb|AC171072.2| Rhesus Macaque CHR7 BAC CH250-508E7 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 165491 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ttctccttcctcttttcctc 308 |||||||||||||||||||| Sbjct: 44040 ttctccttcctcttttcctc 44021
>dbj|D50327.1|HRSIASP Horse mRNA for inhibin alpha subunit precursor, complete cds Length = 1286 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 ggagagctggcccaggaggc 370 |||||||||||||||||||| Sbjct: 309 ggagagctggcccaggaggc 328 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,117,938 Number of Sequences: 3902068 Number of extensions: 5117938 Number of successful extensions: 136398 Number of sequences better than 10.0: 188 Number of HSP's better than 10.0 without gapping: 188 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 135808 Number of HSP's gapped (non-prelim): 583 length of query: 449 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 427 effective length of database: 17,147,199,772 effective search space: 7321854302644 effective search space used: 7321854302644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
