ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast61g03 |
|---|---|
| Clone Library Name | barley_pub |
>MIG10_CAEEL (P34400) Abnormal cell migration protein 10| Length = 779 Score = 30.8 bits (68), Expect = 0.83 Identities = 23/96 (23%), Positives = 42/96 (43%) Frame = +2 Query: 2 ATKTPINI**RGYSITMLQNATNAVADRSHSKARSSTPAPQEHTRYNTGQQTKEHKINRP 181 A +T +N G + + + A + R + K+ S+ P P Y+ Q +P Sbjct: 165 ALETQLNSSNGGDQLLLGVSGIPASSSRENVKSISTLPPPPPALSYHQTPQ-------QP 217 Query: 182 QVITGHDNNPAIRGPSFQVKLINGEPHSCTSETSES 289 Q++ H+N+ + Q+ IN SC+S +S Sbjct: 218 QLLHHHNNHLGYQNGIHQITSINSAASSCSSPDGDS 253
>TGBR3_MOUSE (O88393) TGF-beta receptor type III precursor (TGFR-3)| (Transforming growth factor beta receptor III) (Betaglycan) Length = 850 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 7/73 (9%) Frame = +2 Query: 56 QNATNAVADRSHSKARSSTPAP---QEHTRYNTGQQTKEHKIN----RPQVITGHDNNPA 214 +N D +S S T AP + H R ++ ++ +++ +++ G D+ PA Sbjct: 327 ENLMKWALDNGYSPVTSYTIAPVANRFHLRLENNEEMRDEEVHTIPPELRILLGPDHLPA 386 Query: 215 IRGPSFQVKLING 253 + P FQ ++ NG Sbjct: 387 LDSPPFQGEIPNG 399
>YHR1_HCMVA (P09702) Hypothetical protein HHRF1| Length = 156 Score = 30.0 bits (66), Expect = 1.4 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 9/69 (13%) Frame = +2 Query: 41 SITMLQNATNAVADRSHSKARSS--TPAPQEHT-----RYNTGQQTKE--HKINRPQVIT 193 S++ + T V DRS +K R S TP+P+ R+ T + + NRP V T Sbjct: 14 SLSDTLSRTTGVTDRSRAKYRESNATPSPRSQAPRKVLRFFTVVRDVDLPRSENRPSVRT 73 Query: 194 GHDNNPAIR 220 G PA+R Sbjct: 74 GAQKQPAVR 82
>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced| PDZ-motif protein) (Protein cypher) (Protein oracle) Length = 723 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = +2 Query: 86 SHSKARSSTPAPQEHTRYNTGQQTKEHKINRPQVITGHDNNPAIRGP 226 ++S A +++PAP HT Y+ G K P+V+T P++ P Sbjct: 363 AYSPAAAASPAPSAHTSYSEGPAAPAPK---PRVVTTASIRPSVYQP 406
>PNRC2_RAT (Q66HE1) Proline-rich nuclear receptor coactivator 2| Length = 134 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/75 (24%), Positives = 34/75 (45%) Frame = +2 Query: 95 KARSSTPAPQEHTRYNTGQQTKEHKINRPQVITGHDNNPAIRGPSFQVKLINGEPHSCTS 274 ++R+++ Q+H R T Q + KI + GH NP+ + K ++ + S Sbjct: 13 QSRNASKNQQQHNRQKTKDQNSQMKIVHKKKERGHGYNPSAVQNGGKTKSLSNNSNWNAS 72 Query: 275 ETSESLILELDPISN 319 +S SL+ + N Sbjct: 73 LSSPSLLFKSQASQN 87
>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox| protein NK-1) Length = 659 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Frame = +1 Query: 142 HRTTNERTQDKPATSHNRP*Q*PCNSGSL-LSGEAHQR*AAQLH-VRDVREPHPGARPHL 315 H N T ++ R P + GS+ S A QR +L+ VR + P P PH Sbjct: 120 HNNNNSLTNHNANSNTRRSQSPPASVGSVSFSSPAQQRKLLELNAVRHLARPEPLQHPHA 179 Query: 316 ELLQ 327 LLQ Sbjct: 180 ALLQ 183
>RL5_ARATH (P49227) 60S ribosomal protein L5| Length = 301 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +2 Query: 77 ADRSHSKARSSTPAPQEHTRYNTGQQTKEHKINR 178 A+ +H K S AP+EH RYN + T E + N+ Sbjct: 248 AEPNHKKTEKS--APKEHKRYNLKKLTYEERKNK 279
>ENV_HV1S1 (P19550) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 847 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -1 Query: 74 QHLWRSATLLLNSLFIIC*LVFLW 3 QHLWR TLLL L I + LW Sbjct: 11 QHLWRGGTLLLGMLMICSAVEKLW 34
>MSBA_ACIAD (Q6F9X0) Lipid A export ATP-binding/permease protein msbA| Length = 574 Score = 28.1 bits (61), Expect = 5.4 Identities = 21/80 (26%), Positives = 33/80 (41%) Frame = -3 Query: 378 SLRQEAAAAHKRKSISDLEEFEMGSSSRMRLSDVSDVQLCGSPLMSFT*KEGPRIAGLLS 199 S+RQE A R + G S + +V + S + K+G GLL Sbjct: 93 SIRQEIYAKLIRLPSQYYLDNSSGHISAKIMYNVEQLTAASSESLKIMVKDGLITLGLLG 152 Query: 198 WPVMTCGRFILCSFVCCPVL 139 + + T R LC F+ P++ Sbjct: 153 YLLYTNWRLTLCIFIFMPII 172
>PI3K2_DICDI (P54674) Phosphatidylinositol 3-kinase 2 (EC 2.7.1.137)| (PI3-kinase) (PtdIns-3-kinase) (PI3K) Length = 1858 Score = 28.1 bits (61), Expect = 5.4 Identities = 24/107 (22%), Positives = 41/107 (38%) Frame = +2 Query: 11 TPINI**RGYSITMLQNATNAVADRSHSKARSSTPAPQEHTRYNTGQQTKEHKINRPQVI 190 TP+N R SI N + S S ++TP+P + N + N Sbjct: 145 TPLNRS-RSGSIGSKPICNNLTSSSSSSSTTATTPSPTTTSNNNNNNNNNNNNNNNNNNN 203 Query: 191 TGHDNNPAIRGPSFQVKLINGEPHSCTSETSESLILELDPISNSSRS 331 ++NN + N + T+ T+ S+++ P +SS S Sbjct: 204 NNNNNNNNNNNNNNNNNNNNNNNTTSTTTTTTSILISSSPPPSSSSS 250
>CAPS2_MOUSE (Q8BYR5) Calcium-dependent secretion activator 2 (Calcium-dependent| activator protein for secretion 2) (CAPS-2) Length = 1297 Score = 27.7 bits (60), Expect = 7.0 Identities = 21/60 (35%), Positives = 27/60 (45%) Frame = +2 Query: 152 QTKEHKINRPQVITGHDNNPAIRGPSFQVKLINGEPHSCTSETSESLILELDPISNSSRS 331 QT + + +RPQ T D N P +VKL E E + L P SNSS+S Sbjct: 402 QTDQAEASRPQWGTQGDFNTTHPRPVVKVKLFTESTGVLALEDKELGRVVLYPTSNSSKS 461
>ISPZ_BUCBP (Q89AL3) Probable intracellular septation protein| Length = 178 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -1 Query: 110 LNFLPLNVIDLPQHLWRSATLLLNSLFIIC 21 LN + N I L +++WR +L + F+IC Sbjct: 101 LNIIFKNTIQLSKNVWRKLSLFWSIFFLIC 130
>TOP1_ARCFU (O28469) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 663 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +2 Query: 113 PAPQEHTRYNTGQQTKEHKINRPQVIT 193 P PQ T Y T +Q KEH+I ++ T Sbjct: 615 PLPQNGTLYITAKQCKEHEIKEVKIRT 641
>CABC_PROVU (P59807) Chondroitin ABC lyase 1 precursor (EC 4.2.2.4)| (Chondroitin ABC lyase I) (Chondroitinase ABC) (Chondroitin sulfate lyase) (Chondroitin ABC eliminase) Length = 1021 Score = 27.7 bits (60), Expect = 7.0 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 1/95 (1%) Frame = +2 Query: 56 QNATNAVADRSHSKARSSTPAPQEHTRYNTGQQTKEHKINRPQVITGHDNNPAIRGPS-F 232 + TN + + SK +S A HT N G Q + H I Q+I N + F Sbjct: 272 EKETNLALEENISKLKSDFDALNIHTLANGGTQGR-HLITDKQIIIYQPENLNSQDKQLF 330 Query: 233 QVKLINGEPHSCTSETSESLILELDPISNSSRSDM 337 +I G + S + +LE DP + M Sbjct: 331 DNYVILGNYTTLMFNISRAYVLEKDPTQKAQLKQM 365
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/57 (26%), Positives = 27/57 (47%) Frame = +2 Query: 53 LQNATNAVADRSHSKARSSTPAPQEHTRYNTGQQTKEHKINRPQVITGHDNNPAIRG 223 +Q+ +++ S S+ R TP+ Q R N+ + +R Q T H ++ RG Sbjct: 174 VQSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRG 230
>IF2_LISIN (Q92C29) Translation initiation factor IF-2| Length = 782 Score = 27.3 bits (59), Expect = 9.2 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 10/89 (11%) Frame = +2 Query: 53 LQNATNAVADRSHSKARSSTPAPQEHTRYNTGQQTK----------EHKINRPQVITGHD 202 L+ NA+ D ++ KA AP++ T N +K K N+P G Sbjct: 43 LRQLDNAI-DGTNKKAE----APKKETTSNENGNSKGPNKPNMTNSNEKSNKPNKPAGQA 97 Query: 203 NNPAIRGPSFQVKLINGEPHSCTSETSES 289 N PA S K +P + +++T S Sbjct: 98 NKPATANKSHGAKPATNKPANTSNQTQSS 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,079,741 Number of Sequences: 219361 Number of extensions: 1089125 Number of successful extensions: 2785 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2718 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2785 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
