ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast61g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OR6N1_HUMAN (Q8NGY5) Olfactory receptor 6N1 29 2.3
2LCAP_RAT (P97629) Leucyl-cystinyl aminopeptidase (EC 3.4.11.3) (... 29 3.0
3KCNQ3_BOVIN (P58126) Potassium voltage-gated channel subfamily K... 28 5.2
4MKL1_HUMAN (Q969V6) MKL/myocardin-like protein 1 (Myocardin-rela... 28 6.8
5KCNQ3_HUMAN (O43525) Potassium voltage-gated channel subfamily K... 28 6.8
6POT2_ARATH (O22881) Potassium transporter 2 (AtPOT2) (AtKUP2) (A... 28 6.8
7TAF4_HUMAN (O00268) Transcription initiation factor TFIID subuni... 27 8.8
8KCNQ3_RAT (O88944) Potassium voltage-gated channel subfamily KQT... 27 8.8
9KCNQ3_MOUSE (Q8K3F6) Potassium voltage-gated channel subfamily K... 27 8.8

>OR6N1_HUMAN (Q8NGY5) Olfactory receptor 6N1|
          Length = 312

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 378 IGCILGDFAGPVVAILIFEKLQF 310
           IGC LG  AGPVV I +  +L F
Sbjct: 146 IGCWLGGLAGPVVEISLISRLPF 168



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>LCAP_RAT (P97629) Leucyl-cystinyl aminopeptidase (EC 3.4.11.3) (Cystinyl|
           aminopeptidase) (Oxytocinase) (OTase) (Insulin-regulated
           membrane aminopeptidase) (Insulin-responsive
           aminopeptidase) (IRAP) (Placental leucine
           aminopeptidase) (P-LAP) (Vesicle prot
          Length = 1025

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 337 YPYFREVTVPARRVKTTISRYTVKKPRSSNLASSLPGF 224
           YPY  ++ V A     T   YT+K   S+N+++S  GF
Sbjct: 237 YPYHEQIAVVAPESLLTGHNYTLKIEYSANISNSYYGF 274



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>KCNQ3_BOVIN (P58126) Potassium voltage-gated channel subfamily KQT member 3|
           (Voltage-gated potassium channel subunit Kv7.3)
           (Potassium channel alpha subunit KvLQT3) (KQT-like 3)
          Length = 866

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 382 VDWLYPWRFCRTSCCYPYFR-EVTVPARRVKT-TISRYTVKKPRSSNLASSL 233
           +D +  WRF  +   +P+FR E   PA   K   + R  +  PR SN    L
Sbjct: 393 IDLVATWRFYESVVSFPFFRKEQLDPAASQKLGLLDRVRLSNPRGSNTKGKL 444



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>MKL1_HUMAN (Q969V6) MKL/myocardin-like protein 1 (Myocardin-related|
           transcription factor A) (MRTF-A) (Megakaryoblastic
           leukemia 1 protein) (Megacaryocytic acute leukemia
           protein)
          Length = 931

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 207 STSCSSKPGRLDARLDDLGFLTV*REMVVFTL-LAGTVT 320
           STS + KPG L A LDD+    + +E+ + +L ++GT T
Sbjct: 333 STSLTGKPGALPANLDDMKVAELKQELKLRSLPVSGTKT 371



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>KCNQ3_HUMAN (O43525) Potassium voltage-gated channel subfamily KQT member 3|
           (Voltage-gated potassium channel subunit Kv7.3)
           (Potassium channel alpha subunit KvLQT3) (KQT-like 3)
          Length = 872

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 382 VDWLYPWRFCRTSCCYPYFREVTVPARRVKT--TISRYTVKKPRSSNLASSL 233
           +D +  WRF  +   +P+FR+  + A   +    + R  +  PR SN    L
Sbjct: 393 IDLVATWRFYESVVSFPFFRKEQLEAASSQKLGLLDRVRLSNPRGSNTKGKL 444



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>POT2_ARATH (O22881) Potassium transporter 2 (AtPOT2) (AtKUP2) (AtKT2)|
          Length = 794

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 212 FMFFKTRQARRKVG*PGFLNCVAGDGGLYPSSGNCNFSKIRIATT 346
           FMF +  +    +   G L C+ G   ++   G+ N++ I+IA T
Sbjct: 258 FMFLRKTRVSGWMSLGGILLCITGAEAMFADLGHFNYAAIQIAFT 302



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>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 291 PPSPATQLRNPGHP 250
           PP+PAT  R PGHP
Sbjct: 274 PPAPATLARPPGHP 287



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>KCNQ3_RAT (O88944) Potassium voltage-gated channel subfamily KQT member 3|
           (Voltage-gated potassium channel subunit Kv7.3)
           (Potassium channel alpha subunit KvLQT3) (KQT-like 3)
          Length = 873

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 382 VDWLYPWRFCRTSCCYPYFR--EVTVPARRVKTTISRYTVKKPRSSNLASSL 233
           +D +  WRF  +   +P+FR  ++   A +    + R  +  PR SN    L
Sbjct: 394 LDLVATWRFYESVVSFPFFRKEQLEAAASQKLGLLDRVRLSNPRGSNTKGKL 445



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>KCNQ3_MOUSE (Q8K3F6) Potassium voltage-gated channel subfamily KQT member 3|
           (Voltage-gated potassium channel subunit Kv7.3)
           (Potassium channel alpha subunit KvLQT3) (KQT-like 3)
          Length = 873

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 382 VDWLYPWRFCRTSCCYPYFR--EVTVPARRVKTTISRYTVKKPRSSNLASSL 233
           +D +  WRF  +   +P+FR  ++   A +    + R  +  PR SN    L
Sbjct: 394 LDLVATWRFYESVVSFPFFRKEQLEAAASQKLGLLDRVRLSNPRGSNTKGKL 445


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,027,081
Number of Sequences: 219361
Number of extensions: 1161896
Number of successful extensions: 2350
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2349
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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