ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast61f12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC145078.2| Mus musculus chromosome 1, clone RP24-439O10, complete sequence Length = 162864 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 caaagcaattaactaataca 102 |||||||||||||||||||| Sbjct: 22259 caaagcaattaactaataca 22278
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 tttacaacaacgacggcaacaaat 46 |||||||||| ||||||||||||| Sbjct: 2334083 tttacaacaaagacggcaacaaat 2334060
>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16, complete sequence Length = 163738 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 agtagcagcagtagtatact 132 |||||||||||||||||||| Sbjct: 55739 agtagcagcagtagtatact 55758
>gb|AC084872.6| Homo sapiens BAC clone RP11-702N14 from 7, complete sequence Length = 59281 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 aactaatacagtacgtaaatagta 116 ||||||||||||| |||||||||| Sbjct: 3311 aactaatacagtaggtaaatagta 3288
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 tttacaacaacgacggcaacaaat 46 |||||||||| ||||||||||||| Sbjct: 2448982 tttacaacaaagacggcaacaaat 2448959
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 tttacaacaacgacggcaacaaat 46 |||||||||| ||||||||||||| Sbjct: 2310701 tttacaacaaagacggcaacaaat 2310678
>emb|AJ295721.1|ECO295721 Escherichia coli ompC gene for outer membrane porin C Length = 1095 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 23 tttacaacaacgacggcaacaaat 46 |||||||||| ||||||||||||| Sbjct: 71 tttacaacaaagacggcaacaaat 94
>gb|AC161424.3| Mus musculus BAC clone RP23-252J6 from chromosome 9, complete sequence Length = 244497 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 caaagcaattaactaataca 102 |||||||||||||||||||| Sbjct: 146975 caaagcaattaactaataca 146994
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 tttacaacaacgacggcaacaaat 46 |||||||||| ||||||||||||| Sbjct: 2316013 tttacaacaaagacggcaacaaat 2315990
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 agtagcagcagtagtatact 132 |||||||||||||||||||| Sbjct: 21242265 agtagcagcagtagtatact 21242284
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 gtagcagcagtagtatacta 133 |||||||||||||||||||| Sbjct: 10027653 gtagcagcagtagtatacta 10027672
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 tttacaacaacgacggcaacaaat 46 |||||||||| ||||||||||||| Sbjct: 2313540 tttacaacaaagacggcaacaaat 2313517
>dbj|AP006050.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021H05 Length = 159111 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 gtagcagcagtagtatacta 133 |||||||||||||||||||| Sbjct: 101218 gtagcagcagtagtatacta 101237
>gb|AF057355.1|AF057355 Escherichia coli O157:H7 outer membrane protein OmpC (ompC) gene, complete cds Length = 1101 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 23 tttacaacaacgacggcaacaaat 46 |||||||||| ||||||||||||| Sbjct: 71 tttacaacaaagacggcaacaaat 94
>emb|CR848671.5| Zebrafish DNA sequence from clone CH211-274P22 in linkage group 11, complete sequence Length = 76453 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 aaatagtagcagcagtagta 128 |||||||||||||||||||| Sbjct: 23741 aaatagtagcagcagtagta 23722
>gb|AC114588.9| Mus musculus chromosome 1, clone RP23-363M8, complete sequence Length = 167497 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 caaagcaattaactaataca 102 |||||||||||||||||||| Sbjct: 21731 caaagcaattaactaataca 21712
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 tttacaacaacgacggcaacaaat 46 |||||||||| ||||||||||||| Sbjct: 3116935 tttacaacaaagacggcaacaaat 3116912
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 tttacaacaacgacggcaacaaat 46 |||||||||| ||||||||||||| Sbjct: 3045666 tttacaacaaagacggcaacaaat 3045643
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 23 tttacaacaacgacggcaacaaat 46 |||||||||| ||||||||||||| Sbjct: 810328 tttacaacaaagacggcaacaaat 810351
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 23 tttacaacaacgacggcaacaaat 46 |||||||||| ||||||||||||| Sbjct: 2072923 tttacaacaaagacggcaacaaat 2072946
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 tttacaacaacgacggcaacaaat 46 |||||||||| ||||||||||||| Sbjct: 2386876 tttacaacaaagacggcaacaaat 2386853
>gb|K00541.1|ECOOMPC E.coli ompC and micF genes coding for major outer membrane protein OmpC and mRNA-interfering complementary RNA (micRNA) Length = 1713 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 23 tttacaacaacgacggcaacaaat 46 |||||||||| ||||||||||||| Sbjct: 561 tttacaacaaagacggcaacaaat 584
>gb|AC154391.1| Medicago truncatula chromosome 7 BAC clone mth2-143d17, complete sequence Length = 123865 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 26 acaacaacgacggcaacaaatgt 48 |||||||||||| |||||||||| Sbjct: 116904 acaacaacgacgacaacaaatgt 116926
>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome Length = 1796226 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 tctcttttttactttacaa 29 ||||||||||||||||||| Sbjct: 50999 tctcttttttactttacaa 51017
>gb|AC154043.1| Drosophila melanogaster clone BACR39O11, complete sequence Length = 182468 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 acaacaacgacggcaacaa 44 ||||||||||||||||||| Sbjct: 4711 acaacaacgacggcaacaa 4729
>gb|AC154041.1| Drosophila melanogaster clone BACR43N11, complete sequence Length = 157286 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 acaacaacgacggcaacaa 44 ||||||||||||||||||| Sbjct: 6516 acaacaacgacggcaacaa 6498
>ref|XM_631010.1| Dictyostelium discoideum hypothetical protein (DDB0188565), partial mRNA Length = 1719 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 aatagtagcagcagtagta 128 ||||||||||||||||||| Sbjct: 1204 aatagtagcagcagtagta 1222
>emb|Z48009.1|CEAH6 Caenorhabditis elegans Cosmid AH6, complete sequence Length = 37801 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 tacagtacgtaaatagtag 117 ||||||||||||||||||| Sbjct: 10393 tacagtacgtaaatagtag 10375
>gb|AC146051.2| Pan troglodytes BAC clone RP43-73B15 from 7, complete sequence Length = 157886 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 93 aactaatacagtacgtaaatagt 115 ||||||||||||| ||||||||| Sbjct: 143816 aactaatacagtaggtaaatagt 143838
>gb|AC112677.8| Mus musculus chromosome 3, clone RP23-176J23, complete sequence Length = 215247 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 cttttttactttacaacaa 32 ||||||||||||||||||| Sbjct: 89389 cttttttactttacaacaa 89407
>gb|AC146571.13| Medicago truncatula clone mth2-104a2, complete sequence Length = 140639 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 acaacaacgacggcaacaaatgt 48 |||||||||||| |||||||||| Sbjct: 134001 acaacaacgacgacaacaaatgt 133979
>emb|AL031586.2|HS324C6 Human DNA sequence from clone RP3-324C6 on chromosome Xq26.1-27.3, complete sequence Length = 116392 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 tctcttttttactttacaa 29 ||||||||||||||||||| Sbjct: 75493 tctcttttttactttacaa 75511
>emb|BX061299.1|CNS09JGN Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC42AB05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 939 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 aaatgtcccagtaggccaa 61 ||||||||||||||||||| Sbjct: 903 aaatgtcccagtaggccaa 921
>gb|AC097359.2| Homo sapiens chromosome 3 clone RP11-259K5, complete sequence Length = 187127 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 110 aatagtagcagcagtagta 128 ||||||||||||||||||| Sbjct: 122843 aatagtagcagcagtagta 122825
>gb|AC079363.19| Homo sapiens 12q BAC RP11-617J18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 193741 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 aatagtagcagcagtagta 128 ||||||||||||||||||| Sbjct: 193246 aatagtagcagcagtagta 193264
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 ttacaacaacgacggcaac 42 ||||||||||||||||||| Sbjct: 4197420 ttacaacaacgacggcaac 4197402
>gb|AC102491.19| Mus musculus chromosome 1, clone RP24-529L13, complete sequence Length = 190728 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 aatagtagcagcagtagta 128 ||||||||||||||||||| Sbjct: 22774 aatagtagcagcagtagta 22792
>gb|AC136290.2| Homo sapiens chromosome 3 clone CTD-2104B13, complete sequence Length = 136961 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 aatagtagcagcagtagta 128 ||||||||||||||||||| Sbjct: 126346 aatagtagcagcagtagta 126364
>gb|AC135012.2| Homo sapiens chromosome 16 clone RP11-805I24, complete sequence Length = 157630 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 aatagtagcagcagtagta 128 ||||||||||||||||||| Sbjct: 113316 aatagtagcagcagtagta 113334 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 aatagtagcagcagtagta 128 ||||||||||||||||||| Sbjct: 113031 aatagtagcagcagtagta 113049 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 aatagtagcagcagtagta 128 ||||||||||||||||||| Sbjct: 112806 aatagtagcagcagtagta 112824
>emb|BX072583.7| Zebrafish DNA sequence from clone CH211-185M2 in linkage group 13, complete sequence Length = 154297 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 112 tagtagcagcagtagtata 130 ||||||||||||||||||| Sbjct: 153516 tagtagcagcagtagtata 153534
>emb|BX005015.5| Zebrafish DNA sequence from clone CH211-66I11 in linkage group 9, complete sequence Length = 172283 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 110 aatagtagcagcagtagta 128 ||||||||||||||||||| Sbjct: 36610 aatagtagcagcagtagta 36592
>emb|CR848035.7| Zebrafish DNA sequence from clone CH211-203J1 in linkage group 12, complete sequence Length = 143674 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 aatagtagcagcagtagta 128 ||||||||||||||||||| Sbjct: 108229 aatagtagcagcagtagta 108247
>emb|CR847530.19| Zebrafish DNA sequence from clone DKEY-14I17 in linkage group 20, complete sequence Length = 144640 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 110 aatagtagcagcagtagta 128 ||||||||||||||||||| Sbjct: 134912 aatagtagcagcagtagta 134894
>gb|AE003481.3| Drosophila melanogaster chromosome 3L, section 15 of 83 of the complete sequence Length = 315988 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 acaacaacgacggcaacaa 44 ||||||||||||||||||| Sbjct: 54471 acaacaacgacggcaacaa 54453
>gb|AC118029.11| Mus musculus chromosome 9, clone RP23-465I17, complete sequence Length = 163283 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 aatagtagcagcagtagta 128 ||||||||||||||||||| Sbjct: 109465 aatagtagcagcagtagta 109483
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 ctcttttttactttacaac 30 ||||||||||||||||||| Sbjct: 323603 ctcttttttactttacaac 323621
>dbj|AP001782.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-109E10, complete sequence Length = 169313 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 tctcttttttactttacaa 29 ||||||||||||||||||| Sbjct: 159764 tctcttttttactttacaa 159782
>dbj|AP000783.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-12D18, complete sequence Length = 114233 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 tctcttttttactttacaa 29 ||||||||||||||||||| Sbjct: 42520 tctcttttttactttacaa 42538
>dbj|AP006190.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-145L6, complete sequence Length = 176082 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 110 aatagtagcagcagtagta 128 ||||||||||||||||||| Sbjct: 92271 aatagtagcagcagtagta 92253
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 tctcttttttactttacaa 29 ||||||||||||||||||| Sbjct: 600824 tctcttttttactttacaa 600806
>emb|CT030709.6| Mouse DNA sequence from clone RP23-268C22 on chromosome 9, complete sequence Length = 206089 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 1 aaggcacaaatctcttttttact 23 |||||||||||||| |||||||| Sbjct: 126752 aaggcacaaatctcctttttact 126730
>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome Length = 1796846 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 tctcttttttactttacaa 29 ||||||||||||||||||| Sbjct: 50972 tctcttttttactttacaa 50990 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,299,598 Number of Sequences: 3902068 Number of extensions: 1299598 Number of successful extensions: 101606 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101054 Number of HSP's gapped (non-prelim): 552 length of query: 141 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 120 effective length of database: 17,151,101,840 effective search space: 2058132220800 effective search space used: 2058132220800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
