ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast61f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL928562.7| Mouse DNA sequence from clone RP23-288O19 on chr... 38 1.6
2gb|AY336796.1| Transformation vector pICon, complete sequence 36 6.4
3emb|BX511137.14| Zebrafish DNA sequence from clone DKEY-192A11 i... 36 6.4
4emb|Y00308.1|DMXDH D. melanogaster Xdh gene for xanthine dehydro... 36 6.4
5emb|BX571678.14| Zebrafish DNA sequence from clone DKEY-271J15 i... 36 6.4
6emb|BX548078.8| Zebrafish DNA sequence from clone CH211-212C13 i... 36 6.4
7gb|AC009211.5|AC009211 Drosophila melanogaster, chromosome 3R, r... 36 6.4
8dbj|AB115719.1| Uromyces vignae genes for 18S rRNA, ITS1, 5.8S r... 36 6.4
9dbj|AB115718.1| Uromyces vignae genes for 18S rRNA, ITS1, 5.8S r... 36 6.4
10gb|AE003698.3| Drosophila melanogaster chromosome 3R, section 36... 36 6.4
11emb|AL954672.9| Zebrafish DNA sequence from clone CH211-237K3 in... 36 6.4
12emb|CR854857.19| Zebrafish DNA sequence from clone CH211-129F7 i... 36 6.4

>emb|AL928562.7| Mouse DNA sequence from clone RP23-288O19 on chromosome 2, complete
             sequence
          Length = 148856

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    aaactaacttttattattc 28
             |||||||||||||||||||
Sbjct: 34663 aaactaacttttattattc 34681



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>gb|AY336796.1| Transformation vector pICon, complete sequence
          Length = 23250

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    aaactaacttttattatt 27
             ||||||||||||||||||
Sbjct: 17030 aaactaacttttattatt 17047



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>emb|BX511137.14| Zebrafish DNA sequence from clone DKEY-192A11 in linkage group 7,
             complete sequence
          Length = 214145

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     acaaactaacttttatta 25
             ||||||||||||||||||
Sbjct: 79721 acaaactaacttttatta 79738



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>emb|Y00308.1|DMXDH D. melanogaster Xdh gene for xanthine dehydrogenase (rosy locus)
          Length = 7544

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 10   aaactaacttttattatt 27
            ||||||||||||||||||
Sbjct: 6598 aaactaacttttattatt 6615



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>emb|BX571678.14| Zebrafish DNA sequence from clone DKEY-271J15 in linkage group 16,
             complete sequence
          Length = 252671

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    aaactaacttttattatt 27
             ||||||||||||||||||
Sbjct: 48951 aaactaacttttattatt 48934



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>emb|BX548078.8| Zebrafish DNA sequence from clone CH211-212C13 in linkage group 15,
             complete sequence
          Length = 205316

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 9     caaactaacttttattat 26
             ||||||||||||||||||
Sbjct: 35442 caaactaacttttattat 35459



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>gb|AC009211.5|AC009211 Drosophila melanogaster, chromosome 3R, region 87D11-87E3, BAC clone
            BACR48D15, complete sequence
          Length = 184272

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 10   aaactaacttttattatt 27
            ||||||||||||||||||
Sbjct: 3679 aaactaacttttattatt 3696



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>dbj|AB115719.1| Uromyces vignae genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S
           rRNA, partial and complete sequence,
           specimen_voucher:TSH-R17966 (Mycological Herbarium,
           Univ. of Tsukuba)
          Length = 635

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 10  aaactaacttttattatt 27
           ||||||||||||||||||
Sbjct: 545 aaactaacttttattatt 562



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>dbj|AB115718.1| Uromyces vignae genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S
           rRNA, partial and complete sequence,
           specimen_voucher:TSH-R17965 (Mycological Herbarium,
           Univ. of Tsukuba)
          Length = 632

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 10  aaactaacttttattatt 27
           ||||||||||||||||||
Sbjct: 547 aaactaacttttattatt 564



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>gb|AE003698.3| Drosophila melanogaster chromosome 3R, section 36 of 118 of the complete
              sequence
          Length = 247955

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     aaactaacttttattatt 27
              ||||||||||||||||||
Sbjct: 121824 aaactaacttttattatt 121841



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>emb|AL954672.9| Zebrafish DNA sequence from clone CH211-237K3 in linkage group 7,
             complete sequence
          Length = 180588

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 8     acaaactaacttttatta 25
             ||||||||||||||||||
Sbjct: 70551 acaaactaacttttatta 70534



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>emb|CR854857.19| Zebrafish DNA sequence from clone CH211-129F7 in linkage group 13,
              complete sequence
          Length = 170079

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 10     aaactaacttttattatt 27
              ||||||||||||||||||
Sbjct: 118493 aaactaacttttattatt 118476


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 338,682
Number of Sequences: 3902068
Number of extensions: 338682
Number of successful extensions: 75668
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75646
Number of HSP's gapped (non-prelim): 22
length of query: 49
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 29
effective length of database: 17,155,003,908
effective search space: 497495113332
effective search space used: 497495113332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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