Clone Information

BLAST Search Result

Clone Name	rbast61f04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AL606595.4\|OSJN00035 Oryza sativa genomic DNA, chromosome 4,...	262	8e-67
2	dbj\|AB189168.1\| Oryza sativa (japonica cultivar-group) OsIDHc;1 ...	262	8e-67
3	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	262	8e-67
4	dbj\|AK099258.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	262	8e-67
5	dbj\|AK072524.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	262	8e-67
6	dbj\|AK072240.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	262	8e-67
7	ref\|XM_472893.1\| Oryza sativa (japonica cultivar-group), predic...	252	8e-64
8	gb\|AY775790.1\| Zea mays NAD-dependent isocitrate dehydrogenase m...	208	1e-50
9	ref\|XM_466525.1\| Oryza sativa (japonica cultivar-group), mRNA	153	6e-34
10	dbj\|AB189169.1\| Oryza sativa (japonica cultivar-group) OsIDHc;2 ...	153	6e-34
11	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	153	6e-34
12	dbj\|AP004023.3\| Oryza sativa (japonica cultivar-group) genomic D...	153	6e-34
13	dbj\|AK073096.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	153	6e-34
14	gb\|BT018657.1\| Zea mays clone EL01N0508D03.d mRNA sequence	111	2e-21
15	gb\|AY104383.1\| Zea mays PCO129762 mRNA sequence	84	4e-13
16	gb\|AC064814.10\| Homo sapiens BAC clone CTD-2100B3 from 2, comple...	44	0.37
17	gb\|AC122864.3\| Mus musculus BAC clone RP23-142M19 from 6, comple...	42	1.5
18	emb\|BX322533.5\| Mouse DNA sequence from clone RP23-252N4 on chro...	42	1.5
19	gb\|AC127244.3\| Mus musculus BAC clone RP24-416M6 from 6, complet...	42	1.5
20	dbj\|BA000021.3\| Wigglesworthia glossinidia endosymbiont of Gloss...	42	1.5
21	gb\|AC117570.11\| Mus musculus chromosome 9, clone RP23-18M12, com...	40	5.8
22	ref\|XM_425887.1\| PREDICTED: Gallus gallus similar to transcripti...	40	5.8
23	gb\|AC008020.37\| Mus musculus strain 129S6/SvEvTac chromosome 16 ...	40	5.8
24	emb\|Y16126.1\|LES16126 Lycopersicon esculentum mRNA for mitochond...	40	5.8
25	gb\|AC003062.2\| Mouse Chromosome 16 Region Syntenic to DGCR BAC C...	40	5.8
26	gb\|AC151769.3\| Mus musculus BAC clone RP24-375O19 from chromosom...	40	5.8
27	emb\|BX935818.2\| Gallus gallus finished cDNA, clone ChEST165b17	40	5.8
28	dbj\|BA000013.4\| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete...	40	5.8
29	gb\|AC079831.24\| Mus musculus strain C57BL/6J chromosome 16 clone...	40	5.8
30	gb\|AC133573.11\| Mus musculus strain C57BL/6J clone rp23-139f17, ...	40	5.8
31	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	40	5.8
32	emb\|AL732467.8\| Mouse DNA sequence from clone RP23-147L14 on chr...	40	5.8
33	gb\|AC113264.21\| Mus musculus strain C57BL/6J chromosome 16 clone...	40	5.8
34	gb\|AC145916.3\| Gallus gallus BAC clone CH261-82F15 from chromoso...	40	5.8

>emb|AL606595.4|OSJN00035 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044K18,
              complete sequence
          Length = 176615

 Score =  262 bits (132), Expect = 8e-67
 Identities = 189/208 (90%)
 Strand = Plus / Plus

                                                                          
Query: 218    ggtatctaatccagattagcgatcactgcatcagtaacttcctgggtggtgctggtgccg 277
              ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 104550 ggtatctaatccagattggcgattactgcatcagtgacttcctgggtggtgctggtgccg 104609

                                                                          
Query: 278    cctagatcctttgttctgtactggccttctgcaacgacgcgcttcaccgcagtttccaga 337
              |||||||||||||||||||||| |||||| |||| ||| ||||||||||| || ||||| 
Sbjct: 104610 cctagatcctttgttctgtacttgccttccgcaatgacacgcttcaccgccgtctccagc 104669

                                                                          
Query: 338    cggtcagcgaatgacgggaactgcaaatgcctcaacatcatcgcggacgacaggagcagg 397
              ||||| ||||||||||||||||||||||||||||||||||| ||||| || || ||||| 
Sbjct: 104670 cggtcggcgaatgacgggaactgcaaatgcctcaacatcatggcggatgatagaagcagc 104729

                                          
Query: 398    gcgacagggtttgctttctgctgctcta 425
              || | |||||||||||||| ||||||||
Sbjct: 104730 gcaatagggtttgctttcttctgctcta 104757

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>dbj|AB189168.1| Oryza sativa (japonica cultivar-group) OsIDHc;1 mRNA for
            NAD-dependent isocitrate dehydrogenase c;1, complete cds
          Length = 1290

 Score =  262 bits (132), Expect = 8e-67
 Identities = 189/208 (90%)
 Strand = Plus / Minus

                                                                        
Query: 218  ggtatctaatccagattagcgatcactgcatcagtaacttcctgggtggtgctggtgccg 277
            ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 1156 ggtatctaatccagattggcgattactgcatcagtgacttcctgggtggtgctggtgccg 1097

                                                                        
Query: 278  cctagatcctttgttctgtactggccttctgcaacgacgcgcttcaccgcagtttccaga 337
            |||||||||||||||||||||| |||||| |||| ||| ||||||||||| || ||||| 
Sbjct: 1096 cctagatcctttgttctgtacttgccttccgcaatgacacgcttcaccgccgtctccagc 1037

                                                                        
Query: 338  cggtcagcgaatgacgggaactgcaaatgcctcaacatcatcgcggacgacaggagcagg 397
            ||||| ||||||||||||||||||||||||||||||||||| ||||| || || ||||| 
Sbjct: 1036 cggtcggcgaatgacgggaactgcaaatgcctcaacatcatggcggatgatagaagcagc 977

                                        
Query: 398  gcgacagggtttgctttctgctgctcta 425
            || | |||||||||||||| ||||||||
Sbjct: 976  gcaatagggtttgctttcttctgctcta 949

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  262 bits (132), Expect = 8e-67
 Identities = 189/208 (90%)
 Strand = Plus / Plus

                                                                            
Query: 218      ggtatctaatccagattagcgatcactgcatcagtaacttcctgggtggtgctggtgccg 277
                ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 23939577 ggtatctaatccagattggcgattactgcatcagtgacttcctgggtggtgctggtgccg 23939636

                                                                            
Query: 278      cctagatcctttgttctgtactggccttctgcaacgacgcgcttcaccgcagtttccaga 337
                |||||||||||||||||||||| |||||| |||| ||| ||||||||||| || ||||| 
Sbjct: 23939637 cctagatcctttgttctgtacttgccttccgcaatgacacgcttcaccgccgtctccagc 23939696

                                                                            
Query: 338      cggtcagcgaatgacgggaactgcaaatgcctcaacatcatcgcggacgacaggagcagg 397
                ||||| ||||||||||||||||||||||||||||||||||| ||||| || || ||||| 
Sbjct: 23939697 cggtcggcgaatgacgggaactgcaaatgcctcaacatcatggcggatgatagaagcagc 23939756

                                            
Query: 398      gcgacagggtttgctttctgctgctcta 425
                || | |||||||||||||| ||||||||
Sbjct: 23939757 gcaatagggtttgctttcttctgctcta 23939784

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>dbj|AK099258.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001J19, full
            insert sequence
          Length = 1508

 Score =  262 bits (132), Expect = 8e-67
 Identities = 189/208 (90%)
 Strand = Plus / Minus

                                                                        
Query: 218  ggtatctaatccagattagcgatcactgcatcagtaacttcctgggtggtgctggtgccg 277
            ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 1238 ggtatctaatccagattggcgattactgcatcagtgacttcctgggtggtgctggtgccg 1179

                                                                        
Query: 278  cctagatcctttgttctgtactggccttctgcaacgacgcgcttcaccgcagtttccaga 337
            |||||||||||||||||||||| |||||| |||| ||| ||||||||||| || ||||| 
Sbjct: 1178 cctagatcctttgttctgtacttgccttccgcaatgacacgcttcaccgccgtctccagc 1119

                                                                        
Query: 338  cggtcagcgaatgacgggaactgcaaatgcctcaacatcatcgcggacgacaggagcagg 397
            ||||| ||||||||||||||||||||||||||||||||||| ||||| || || ||||| 
Sbjct: 1118 cggtcggcgaatgacgggaactgcaaatgcctcaacatcatggcggatgatagaagcagc 1059

                                        
Query: 398  gcgacagggtttgctttctgctgctcta 425
            || | |||||||||||||| ||||||||
Sbjct: 1058 gcaatagggtttgctttcttctgctcta 1031

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>dbj|AK072524.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127J10, full
            insert sequence
          Length = 1598

 Score =  262 bits (132), Expect = 8e-67
 Identities = 189/208 (90%)
 Strand = Plus / Minus

                                                                        
Query: 218  ggtatctaatccagattagcgatcactgcatcagtaacttcctgggtggtgctggtgccg 277
            ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 1254 ggtatctaatccagattggcgattactgcatcagtgacttcctgggtggtgctggtgccg 1195

                                                                        
Query: 278  cctagatcctttgttctgtactggccttctgcaacgacgcgcttcaccgcagtttccaga 337
            |||||||||||||||||||||| |||||| |||| ||| ||||||||||| || ||||| 
Sbjct: 1194 cctagatcctttgttctgtacttgccttccgcaatgacacgcttcaccgccgtctccagc 1135

                                                                        
Query: 338  cggtcagcgaatgacgggaactgcaaatgcctcaacatcatcgcggacgacaggagcagg 397
            ||||| ||||||||||||||||||||||||||||||||||| ||||| || || ||||| 
Sbjct: 1134 cggtcggcgaatgacgggaactgcaaatgcctcaacatcatggcggatgatagaagcagc 1075

                                        
Query: 398  gcgacagggtttgctttctgctgctcta 425
            || | |||||||||||||| ||||||||
Sbjct: 1074 gcaatagggtttgctttcttctgctcta 1047

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>dbj|AK072240.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001I19, full
            insert sequence
          Length = 1508

 Score =  262 bits (132), Expect = 8e-67
 Identities = 189/208 (90%)
 Strand = Plus / Minus

                                                                        
Query: 218  ggtatctaatccagattagcgatcactgcatcagtaacttcctgggtggtgctggtgccg 277
            ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 1238 ggtatctaatccagattggcgattactgcatcagtgacttcctgggtggtgctggtgccg 1179

                                                                        
Query: 278  cctagatcctttgttctgtactggccttctgcaacgacgcgcttcaccgcagtttccaga 337
            |||||||||||||||||||||| |||||| |||| ||| ||||||||||| || ||||| 
Sbjct: 1178 cctagatcctttgttctgtacttgccttccgcaatgacacgcttcaccgccgtctccagc 1119

                                                                        
Query: 338  cggtcagcgaatgacgggaactgcaaatgcctcaacatcatcgcggacgacaggagcagg 397
            ||||| ||||||||||||||||||||||||||||||||||| ||||| || || ||||| 
Sbjct: 1118 cggtcggcgaatgacgggaactgcaaatgcctcaacatcatggcggatgatagaagcagc 1059

                                        
Query: 398  gcgacagggtttgctttctgctgctcta 425
            || | |||||||||||||| ||||||||
Sbjct: 1058 gcaatagggtttgctttcttctgctcta 1031

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>ref|XM_472893.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1020

 Score =  252 bits (127), Expect = 8e-64
 Identities = 184/203 (90%)
 Strand = Plus / Minus

                                                                        
Query: 223  ctaatccagattagcgatcactgcatcagtaacttcctgggtggtgctggtgccgcctag 282
            |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1020 ctaatccagattggcgattactgcatcagtgacttcctgggtggtgctggtgccgcctag 961

                                                                        
Query: 283  atcctttgttctgtactggccttctgcaacgacgcgcttcaccgcagtttccagacggtc 342
            ||||||||||||||||| |||||| |||| ||| ||||||||||| || ||||| |||||
Sbjct: 960  atcctttgttctgtacttgccttccgcaatgacacgcttcaccgccgtctccagccggtc 901

                                                                        
Query: 343  agcgaatgacgggaactgcaaatgcctcaacatcatcgcggacgacaggagcagggcgac 402
             ||||||||||||||||||||||||||||||||||| ||||| || || ||||| || | 
Sbjct: 900  ggcgaatgacgggaactgcaaatgcctcaacatcatggcggatgatagaagcagcgcaat 841

                                   
Query: 403  agggtttgctttctgctgctcta 425
            |||||||||||||| ||||||||
Sbjct: 840  agggtttgctttcttctgctcta 818

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>gb|AY775790.1| Zea mays NAD-dependent isocitrate dehydrogenase mRNA, partial cds
          Length = 1117

 Score =  208 bits (105), Expect = 1e-50
 Identities = 183/209 (87%)
 Strand = Plus / Minus

                                                                       
Query: 221 atctaatccagattagcgatcactgcatcagtaacttcctgggtggtgctggtgccgcct 280
           |||||||||||||| || | ||| ||||| ||||||||||||||||||||| | ||||| 
Sbjct: 809 atctaatccagattggcaaccacagcatcggtaacttcctgggtggtgctgctaccgccc 750

                                                                       
Query: 281 agatcctttgttctgtactggccttctgcaacgacgcgcttcaccgcagtttccagacgg 340
           ||||||||||||||||||  |||||| |||||||| |||||||| || || || || |||
Sbjct: 749 agatcctttgttctgtacgtgccttcagcaacgacacgcttcactgccgtctcgagccgg 690

                                                                       
Query: 341 tcagcgaatgacgggaactgcaaatgcctcaacatcatcgcggacgacaggagcagggcg 400
           || || |||||||||||||||||||||||||||||||| || || ||||| ||||| |||
Sbjct: 689 tccgcaaatgacgggaactgcaaatgcctcaacatcatagcagatgacagaagcagcgcg 630

                                        
Query: 401 acagggtttgctttctgctgctctacaag 429
           |||||||||||||||| |||||| |||||
Sbjct: 629 acagggtttgctttcttctgctccacaag 601

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>ref|XM_466525.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1476

 Score =  153 bits (77), Expect = 6e-34
 Identities = 164/193 (84%)
 Strand = Plus / Minus

                                                                        
Query: 236  gcgatcactgcatcagtaacttcctgggtggtgctggtgccgcctagatcctttgttctg 295
            |||||||||||||| || |||||||| ||||||||| ||||||| |  || || ||||||
Sbjct: 1155 gcgatcactgcatccgtgacttcctgcgtggtgctgctgccgcccaagtctttggttctg 1096

                                                                        
Query: 296  tactggccttctgcaacgacgcgcttcaccgcagtttccagacggtcagcgaatgacggg 355
            |||| ||||||||| | ||| ||||||||||| || ||||| |||||||||||||| |||
Sbjct: 1095 tacttgccttctgcgatgacacgcttcaccgccgtctccagccggtcagcgaatgatggg 1036

                                                                        
Query: 356  aactgcaaatgcctcaacatcatcgcggacgacaggagcagggcgacagggtttgctttc 415
            || |||||||||| ||||||||| || || || |||||||| || || ||||| ||||||
Sbjct: 1035 aattgcaaatgccgcaacatcatggcagatgagaggagcagagcaacggggttagctttc 976

                         
Query: 416  tgctgctctacaa 428
            | |||||| ||||
Sbjct: 975  ttctgctccacaa 963

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>dbj|AB189169.1| Oryza sativa (japonica cultivar-group) OsIDHc;2 mRNA for
            NAD-dependent isocitrate dehydrogenase c;2, complete cds
          Length = 1516

 Score =  153 bits (77), Expect = 6e-34
 Identities = 164/193 (84%)
 Strand = Plus / Minus

                                                                        
Query: 236  gcgatcactgcatcagtaacttcctgggtggtgctggtgccgcctagatcctttgttctg 295
            |||||||||||||| || |||||||| ||||||||| ||||||| |  || || ||||||
Sbjct: 1158 gcgatcactgcatccgtgacttcctgcgtggtgctgctgccgcccaagtctttggttctg 1099

                                                                        
Query: 296  tactggccttctgcaacgacgcgcttcaccgcagtttccagacggtcagcgaatgacggg 355
            |||| ||||||||| | ||| ||||||||||| || ||||| |||||||||||||| |||
Sbjct: 1098 tacttgccttctgcgatgacacgcttcaccgccgtctccagccggtcagcgaatgatggg 1039

                                                                        
Query: 356  aactgcaaatgcctcaacatcatcgcggacgacaggagcagggcgacagggtttgctttc 415
            || |||||||||| ||||||||| || || || |||||||| || || ||||| ||||||
Sbjct: 1038 aattgcaaatgccgcaacatcatggcagatgagaggagcagagcaacggggttagctttc 979

                         
Query: 416  tgctgctctacaa 428
            | |||||| ||||
Sbjct: 978  ttctgctccacaa 966

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  153 bits (77), Expect = 6e-34
 Identities = 164/193 (84%)
 Strand = Plus / Plus

                                                                            
Query: 236      gcgatcactgcatcagtaacttcctgggtggtgctggtgccgcctagatcctttgttctg 295
                |||||||||||||| || |||||||| ||||||||| ||||||| |  || || ||||||
Sbjct: 23126725 gcgatcactgcatccgtgacttcctgcgtggtgctgctgccgcccaagtctttggttctg 23126784

                                                                            
Query: 296      tactggccttctgcaacgacgcgcttcaccgcagtttccagacggtcagcgaatgacggg 355
                |||| ||||||||| | ||| ||||||||||| || ||||| |||||||||||||| |||
Sbjct: 23126785 tacttgccttctgcgatgacacgcttcaccgccgtctccagccggtcagcgaatgatggg 23126844

                                                                            
Query: 356      aactgcaaatgcctcaacatcatcgcggacgacaggagcagggcgacagggtttgctttc 415
                || |||||||||| ||||||||| || || || |||||||| || || ||||| ||||||
Sbjct: 23126845 aattgcaaatgccgcaacatcatggcagatgagaggagcagagcaacggggttagctttc 23126904

                             
Query: 416      tgctgctctacaa 428
                | |||||| ||||
Sbjct: 23126905 ttctgctccacaa 23126917

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>dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1126_D09
          Length = 138615

 Score =  153 bits (77), Expect = 6e-34
 Identities = 164/193 (84%)
 Strand = Plus / Plus

                                                                         
Query: 236   gcgatcactgcatcagtaacttcctgggtggtgctggtgccgcctagatcctttgttctg 295
             |||||||||||||| || |||||||| ||||||||| ||||||| |  || || ||||||
Sbjct: 93763 gcgatcactgcatccgtgacttcctgcgtggtgctgctgccgcccaagtctttggttctg 93822

                                                                         
Query: 296   tactggccttctgcaacgacgcgcttcaccgcagtttccagacggtcagcgaatgacggg 355
             |||| ||||||||| | ||| ||||||||||| || ||||| |||||||||||||| |||
Sbjct: 93823 tacttgccttctgcgatgacacgcttcaccgccgtctccagccggtcagcgaatgatggg 93882

                                                                         
Query: 356   aactgcaaatgcctcaacatcatcgcggacgacaggagcagggcgacagggtttgctttc 415
             || |||||||||| ||||||||| || || || |||||||| || || ||||| ||||||
Sbjct: 93883 aattgcaaatgccgcaacatcatggcagatgagaggagcagagcaacggggttagctttc 93942

                          
Query: 416   tgctgctctacaa 428
             | |||||| ||||
Sbjct: 93943 ttctgctccacaa 93955

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>dbj|AK073096.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033005G21, full
            insert sequence
          Length = 1476

 Score =  153 bits (77), Expect = 6e-34
 Identities = 164/193 (84%)
 Strand = Plus / Minus

                                                                        
Query: 236  gcgatcactgcatcagtaacttcctgggtggtgctggtgccgcctagatcctttgttctg 295
            |||||||||||||| || |||||||| ||||||||| ||||||| |  || || ||||||
Sbjct: 1155 gcgatcactgcatccgtgacttcctgcgtggtgctgctgccgcccaagtctttggttctg 1096

                                                                        
Query: 296  tactggccttctgcaacgacgcgcttcaccgcagtttccagacggtcagcgaatgacggg 355
            |||| ||||||||| | ||| ||||||||||| || ||||| |||||||||||||| |||
Sbjct: 1095 tacttgccttctgcgatgacacgcttcaccgccgtctccagccggtcagcgaatgatggg 1036

                                                                        
Query: 356  aactgcaaatgcctcaacatcatcgcggacgacaggagcagggcgacagggtttgctttc 415
            || |||||||||| ||||||||| || || || |||||||| || || ||||| ||||||
Sbjct: 1035 aattgcaaatgccgcaacatcatggcagatgagaggagcagagcaacggggttagctttc 976

                         
Query: 416  tgctgctctacaa 428
            | |||||| ||||
Sbjct: 975  ttctgctccacaa 963

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>gb|BT018657.1| Zea mays clone EL01N0508D03.d mRNA sequence
          Length = 1512

 Score =  111 bits (56), Expect = 2e-21
 Identities = 137/164 (83%)
 Strand = Plus / Minus

                                                                        
Query: 245  gcatcagtaacttcctgggtggtgctggtgccgcctagatcctttgttctgtactggcct 304
            ||||| || ||||||||||||| |||||||||||| | ||| || |||||||||| ||||
Sbjct: 1189 gcatctgtgacttcctgggtggggctggtgccgcccaaatctttggttctgtacttgcct 1130

                                                                        
Query: 305  tctgcaacgacgcgcttcaccgcagtttccagacggtcagcgaatgacgggaactgcaaa 364
            ||||||| ||| ||||| || || || ||||| |||||||| || || ||||| ||||| 
Sbjct: 1129 tctgcaatgacacgcttaactgccgtctccagccggtcagcaaaagatgggaattgcaag 1070

                                                        
Query: 365  tgcctcaacatcatcgcggacgacaggagcagggcgacagggtt 408
            |||||||||||||| || || || || ||||| || ||||||||
Sbjct: 1069 tgcctcaacatcatggcagaagatagcagcagtgcaacagggtt 1026

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>gb|AY104383.1| Zea mays PCO129762 mRNA sequence
          Length = 827

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                       
Query: 354 ggaactgcaaatgcctcaacatcatcgcggacgacaggagcagggcgacagggtttgctt 413
           ||||||||||||||||||||||||| || || ||||| | ||| || |||||||||||||
Sbjct: 676 ggaactgcaaatgcctcaacatcatagcagatgacagaancagcgcnacagggtttgctt 617

                           
Query: 414 tctgctgctctacaag 429
           ||| |||||| |||||
Sbjct: 616 tcttctgctccacaag 601

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>gb|AC064814.10| Homo sapiens BAC clone CTD-2100B3 from 2, complete sequence
          Length = 134167

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 170   acttttaaaccagtcctccaaaagaa 195
             |||||||||||||||| |||||||||
Sbjct: 19853 acttttaaaccagtcccccaaaagaa 19878

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>gb|AC122864.3| Mus musculus BAC clone RP23-142M19 from 6, complete sequence
          Length = 210148

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 55    tttgccttgctacaaagtctc 75
             |||||||||||||||||||||
Sbjct: 27299 tttgccttgctacaaagtctc 27279

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>emb|BX322533.5| Mouse DNA sequence from clone RP23-252N4 on chromosome X, complete
            sequence
          Length = 105412

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 106  attatttctgaaacagaattg 126
            |||||||||||||||||||||
Sbjct: 3963 attatttctgaaacagaattg 3943

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>gb|AC127244.3| Mus musculus BAC clone RP24-416M6 from 6, complete sequence
          Length = 165720

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 55     tttgccttgctacaaagtctc 75
              |||||||||||||||||||||
Sbjct: 105740 tttgccttgctacaaagtctc 105720

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>dbj|BA000021.3| Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA,
             complete genome
          Length = 697724

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 105   aattatttctgaaacagaatt 125
             |||||||||||||||||||||
Sbjct: 19341 aattatttctgaaacagaatt 19361

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>gb|AC117570.11| Mus musculus chromosome 9, clone RP23-18M12, complete sequence
          Length = 238598

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    tggattcctcaattatttct 114
             ||||||||||||||||||||
Sbjct: 37646 tggattcctcaattatttct 37665

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>ref|XM_425887.1| PREDICTED: Gallus gallus similar to transcription elongation factor
           B polypeptide 3 binding protein 1; elongin A binding
           protein 1 (LOC428327), mRNA
          Length = 3186

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 97  gattcctcaattatttctgaaaca 120
           ||||||||| ||||||||||||||
Sbjct: 463 gattcctcacttatttctgaaaca 486

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>gb|AC008020.37| Mus musculus strain 129S6/SvEvTac chromosome 16 clone rp21-598k13,
             complete sequence
          Length = 184044

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 406   gtttgctttctgctgctcta 425
             ||||||||||||||||||||
Sbjct: 36693 gtttgctttctgctgctcta 36712

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>emb|Y16126.1|LES16126 Lycopersicon esculentum mRNA for mitochondrial NAD-dependent
            isocitrate dehydrogenase-like protein
          Length = 1675

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 347  aatgacgggaactgcaaatgcctcaacatcat 378
            ||||| |||||||||| ||| |||||||||||
Sbjct: 1178 aatgaagggaactgcagatgtctcaacatcat 1147

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>gb|AC003062.2| Mouse Chromosome 16 Region Syntenic to DGCR BAC Clone b264n1, complete
             sequence
          Length = 89743

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 406   gtttgctttctgctgctcta 425
             ||||||||||||||||||||
Sbjct: 61434 gtttgctttctgctgctcta 61453

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>gb|AC151769.3| Mus musculus BAC clone RP24-375O19 from chromosome 9, complete sequence
          Length = 186410

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    tggattcctcaattatttct 114
             ||||||||||||||||||||
Sbjct: 70575 tggattcctcaattatttct 70556

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>emb|BX935818.2| Gallus gallus finished cDNA, clone ChEST165b17
          Length = 1288

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 97  gattcctcaattatttctgaaaca 120
           ||||||||| ||||||||||||||
Sbjct: 433 gattcctcacttatttctgaaaca 456

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>dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete genome
          Length = 351911

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    gcctcaacatcatcgcggac 385
              ||||||||||||||||||||
Sbjct: 192103 gcctcaacatcatcgcggac 192122

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>gb|AC079831.24| Mus musculus strain C57BL/6J chromosome 16 clone rp23-374p12, complete
              sequence
          Length = 147412

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 406    gtttgctttctgctgctcta 425
              ||||||||||||||||||||
Sbjct: 111481 gtttgctttctgctgctcta 111462

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>gb|AC133573.11| Mus musculus strain C57BL/6J clone rp23-139f17, complete sequence
          Length = 224138

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 406   gtttgctttctgctgctcta 425
             ||||||||||||||||||||
Sbjct: 72353 gtttgctttctgctgctcta 72334

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 366     gcctcaacatcatcgcggac 385
               ||||||||||||||||||||
Sbjct: 4062201 gcctcaacatcatcgcggac 4062182

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>emb|AL732467.8| Mouse DNA sequence from clone RP23-147L14 on chromosome 2, complete
              sequence
          Length = 229048

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    agaagttgggacttttaaac 179
              ||||||||||||||||||||
Sbjct: 111711 agaagttgggacttttaaac 111692

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>gb|AC113264.21| Mus musculus strain C57BL/6J chromosome 16 clone rp23-357j7, complete
              sequence
          Length = 222589

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 406    gtttgctttctgctgctcta 425
              ||||||||||||||||||||
Sbjct: 155473 gtttgctttctgctgctcta 155492

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>gb|AC145916.3| Gallus gallus BAC clone CH261-82F15 from chromosome unknown, complete
             sequence
          Length = 209299

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    attcctcaattatttctgaa 117
             ||||||||||||||||||||
Sbjct: 14094 attcctcaattatttctgaa 14113


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,700,186
Number of Sequences: 3902068
Number of extensions: 3700186
Number of successful extensions: 61353
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61241
Number of HSP's gapped (non-prelim): 112
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result