ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast61d07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 275 atcagtggcagatggggcacatcatcaagccgttctcgttgcacttgccgcacctctcga 334 ||||||||||||||||||||| ||| | ||||||||||||||||||| |||||| ||||| Sbjct: 7517490 atcagtggcagatggggcacagcatgaggccgttctcgttgcacttggcgcaccgctcga 7517431 Query: 335 c 335 | Sbjct: 7517430 c 7517430 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 339 gccgccagtgccaccgtcgccgccg 363 |||||||||||| |||||||||||| Sbjct: 1266787 gccgccagtgccgccgtcgccgccg 1266763
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0708G02 Length = 168976 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 275 atcagtggcagatggggcacatcatcaagccgttctcgttgcacttgccgcacctctcga 334 ||||||||||||||||||||| ||| | ||||||||||||||||||| |||||| ||||| Sbjct: 66282 atcagtggcagatggggcacagcatgaggccgttctcgttgcacttggcgcaccgctcga 66223 Query: 335 c 335 | Sbjct: 66222 c 66222
>dbj|AK062963.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-D08, full insert sequence Length = 422 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 275 atcagtggcagatggggcacatcatcaagccgttctcgttgcacttgccgcacctctcga 334 ||||||||||||||||||||| ||| | ||||||||||||||||||| |||||| ||||| Sbjct: 213 atcagtggcagatggggcacagcatgaggccgttctcgttgcacttggcgcaccgctcga 154 Query: 335 c 335 | Sbjct: 153 c 153
>ref|NM_188668.1| Oryza sativa (japonica cultivar-group), Ozsa8271 predicted mRNA Length = 1176 Score = 79.8 bits (40), Expect = 6e-12 Identities = 55/60 (91%) Strand = Plus / Minus Query: 276 tcagtggcagatggggcacatcatcaagccgttctcgttgcacttgccgcacctctcgac 335 |||||||||||||||||||| ||| | ||||||||||||||||||| |||||| |||||| Sbjct: 1176 tcagtggcagatggggcacagcatgaggccgttctcgttgcacttggcgcaccgctcgac 1117
>gb|AC158357.4| Mus musculus BAC clone RP23-434L22 from chromosome 8, complete sequence Length = 217671 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 152 tattaaactgtactgtattctatata 177 ||||||| |||||||||||||||||| Sbjct: 150224 tattaaaatgtactgtattctatata 150199
>gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0115F21, complete sequence Length = 128493 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 338 cgccgccagtgccaccgtcgccgccg 363 |||||||| ||||||||||||||||| Sbjct: 38450 cgccgccattgccaccgtcgccgccg 38475
>gb|AY526404.1| Arachis hypogaea clone PM648 microsatellite sequence Length = 329 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 365 ccaccaccttgcagccgccaccgcac 390 |||||||||| ||||||||||||||| Sbjct: 308 ccaccaccttccagccgccaccgcac 283
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 348 gccaccgtcgccgccgaccaccacct 373 |||||||||||||||| ||||||||| Sbjct: 4883252 gccaccgtcgccgccggccaccacct 4883227
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 338 cgccgccagtgccaccgtcgccgccg 363 |||||||| ||||||||||||||||| Sbjct: 6475973 cgccgccattgccaccgtcgccgccg 6475998
>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 120825 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 348 gccaccgtcgccgccgaccaccacct 373 |||||||||||||||| ||||||||| Sbjct: 55170 gccaccgtcgccgccggccaccacct 55195
>dbj|AK110258.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-A11, full insert sequence Length = 869 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 338 cgccgccagtgccaccgtcgccgccg 363 |||||||| ||||||||||||||||| Sbjct: 462 cgccgccattgccaccgtcgccgccg 487
>dbj|AK069508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020L23, full insert sequence Length = 1819 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 348 gccaccgtcgccgccgaccaccacct 373 |||||||||||||||| ||||||||| Sbjct: 1186 gccaccgtcgccgccggccaccacct 1161
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 348 gccaccgtcgccgccgaccaccacct 373 |||||||||||||||| ||||||||| Sbjct: 4883234 gccaccgtcgccgccggccaccacct 4883209
>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141053 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 348 gccaccgtcgccgccgaccaccacct 373 |||||||||||||||| ||||||||| Sbjct: 76707 gccaccgtcgccgccggccaccacct 76732
>ref|XM_549966.1| Oryza sativa (japonica cultivar-group), mRNA Length = 807 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 339 gccgccagtgccaccgtcgccgccg 363 |||||||||||| |||||||||||| Sbjct: 546 gccgccagtgccgccgtcgccgccg 522
>ref|XM_472404.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1347 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 303 gccgttctcgttgcacttgccgcac 327 ||||||||||||||||| ||||||| Sbjct: 1320 gccgttctcgttgcactcgccgcac 1296
>gb|AC113983.13| Mus musculus chromosome 5, clone RP24-95M11, complete sequence Length = 198590 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 acgtatgcacagatacatgga 257 ||||||||||||||||||||| Sbjct: 58290 acgtatgcacagatacatgga 58270
>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04, complete sequence Length = 143301 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 303 gccgttctcgttgcacttgccgcac 327 ||||||||||||||||| ||||||| Sbjct: 134663 gccgttctcgttgcactcgccgcac 134639
>emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000126_13, complete sequence Length = 113960 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 303 gccgttctcgttgcacttgccgcac 327 ||||||||||||||||| ||||||| Sbjct: 17450 gccgttctcgttgcactcgccgcac 17426
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 ccgtcgccgccgaccaccacc 372 ||||||||||||||||||||| Sbjct: 1241512 ccgtcgccgccgaccaccacc 1241532
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 352 ccgtcgccgccgaccaccaccttgc 376 ||||||||||||| ||||||||||| Sbjct: 449785 ccgtcgccgccgatcaccaccttgc 449809
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 303 gccgttctcgttgcacttgccgcac 327 ||||||||||||||||| ||||||| Sbjct: 20404030 gccgttctcgttgcactcgccgcac 20404006
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 352 ccgtcgccgccgaccaccaccttgc 376 ||||||||||||| ||||||||||| Sbjct: 696310 ccgtcgccgccgatcaccaccttgc 696334
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 338 cgccgccagtgccaccgtcgccgcc 362 ||||||||||||| ||||||||||| Sbjct: 2591193 cgccgccagtgccgccgtcgccgcc 2591217
>dbj|AP003046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0445D12 Length = 140952 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 339 gccgccagtgccaccgtcgccgccg 363 |||||||||||| |||||||||||| Sbjct: 60441 gccgccagtgccgccgtcgccgccg 60417
>dbj|AK060508.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-B12, full insert sequence Length = 1751 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 303 gccgttctcgttgcacttgccgcac 327 ||||||||||||||||| ||||||| Sbjct: 1508 gccgttctcgttgcactcgccgcac 1484
>emb|BX649345.16| Zebrafish DNA sequence from clone DKEY-161F11 in linkage group 11, complete sequence Length = 138432 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 aactgtactgtattctatata 177 ||||||||||||||||||||| Sbjct: 100085 aactgtactgtattctatata 100105
>ref|XM_478186.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1377 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 ccgtcgccgccgaccaccaccttg 375 ||||||| |||||||||||||||| Sbjct: 614 ccgtcgcagccgaccaccaccttg 591
>ref|XM_477524.1| Oryza sativa (japonica cultivar-group), mRNA Length = 786 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 340 ccgccagtgccaccgtcgccgccg 363 |||||| ||||||||||||||||| Sbjct: 304 ccgccactgccaccgtcgccgccg 281
>gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0084F23, complete sequence Length = 89829 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gccaccgtcgccgccgacca 367 |||||||||||||||||||| Sbjct: 70532 gccaccgtcgccgccgacca 70551
>gb|U67948.1| Caenorhabditis elegans cosmid M02E1, complete sequence Length = 30836 Score = 40.1 bits (20), Expect = 5.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 24 aaatttcgattgagttttaaaaaacccggttt 55 ||||||| |||| ||||||||||||||||||| Sbjct: 27908 aaatttcaattg-gttttaaaaaacccggttt 27938
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 340 ccgccagtgccaccgtcgccgccg 363 ||||||| |||||||||||||||| Sbjct: 3157442 ccgccagcgccaccgtcgccgccg 3157419
>gb|AE013001.1| Thermoanaerobacter tengcongensis MB4, section 28 of 244 of the complete genome Length = 11975 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 cagaagagattactcaatcaatta 80 ||||||||||||||||||| |||| Sbjct: 7367 cagaagagattactcaatctatta 7390
>emb|BX248343.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 10/14 Length = 307550 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 340 ccgccagtgccaccgtcgccgccg 363 ||||||| |||||||||||||||| Sbjct: 302248 ccgccagcgccaccgtcgccgccg 302225
>gb|AC138312.3| Mus musculus BAC clone RP23-235K7 from chromosome 9, complete sequence Length = 176504 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 gagattactcaatcaattac 81 |||||||||||||||||||| Sbjct: 47297 gagattactcaatcaattac 47278
>ref|XM_811956.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053510175.60) partial mRNA Length = 10395 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 335 ccacgccgccagtgccaccgtcgccgcc 362 |||||||||||||||| || |||||||| Sbjct: 4877 ccacgccgccagtgccgccatcgccgcc 4904
>ref|XM_805468.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053508573.39) partial mRNA Length = 8702 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 335 ccacgccgccagtgccaccgtcgccgcc 362 ||||||||||||||||||| ||||||| Sbjct: 4934 ccacgccgccagtgccacccacgccgcc 4961
>gb|U41019.2| Caenorhabditis elegans cosmid C04E7, complete sequence Length = 37360 Score = 40.1 bits (20), Expect = 5.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 24 aaatttcgattgagttttaaaaaacccggttt 55 ||||||| |||| ||||||||||||||||||| Sbjct: 272 aaatttcaattg-gttttaaaaaacccggttt 302
>emb|AL589666.5| Human DNA sequence from clone RP11-321N4 on chromosome 6 Contains the 3' end of the gene for sorting nexin 14 (SNX14), the 3' end of the NT5E gene for 5'-nucleotidase, ecto (CD73) and a novel gene, complete sequence Length = 129010 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 24 aaatttcgattgagttttaaaaaa 47 ||||| |||||||||||||||||| Sbjct: 120422 aaattacgattgagttttaaaaaa 120399
>emb|AL450425.13| Human DNA sequence from clone RP11-219C11 on chromosome 13 Contains a heterogeneous nuclear ribonucleoprotein A2/B1 (HNRPA2B1) pseudogene, complete sequence Length = 141980 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 acagatacatggatgaaggt 264 |||||||||||||||||||| Sbjct: 77302 acagatacatggatgaaggt 77283
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 acatcatcaagccgttctcg 312 |||||||||||||||||||| Sbjct: 160314 acatcatcaagccgttctcg 160295
>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13 Length = 348676 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 340 ccgccagtgccaccgtcgccgccg 363 ||||||| |||||||||||||||| Sbjct: 44195 ccgccagcgccaccgtcgccgccg 44172
>gb|AC105183.8| Homo sapiens chromosome 18, clone RP11-348C8, complete sequence Length = 141512 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 atcaattaccctgactgcca 92 |||||||||||||||||||| Sbjct: 45059 atcaattaccctgactgcca 45078
>gb|AC084212.17| Homo sapiens 3 BAC RP11-109B8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 145318 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cagagaacatgctttgattt 200 |||||||||||||||||||| Sbjct: 82586 cagagaacatgctttgattt 82567
>gb|AC105094.6| Homo sapiens chromosome 18, clone RP11-1096D5, complete sequence Length = 210317 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 atcaattaccctgactgcca 92 |||||||||||||||||||| Sbjct: 29306 atcaattaccctgactgcca 29287
>gb|AC110997.4| Homo sapiens chromosome 18, clone RP11-56J20, complete sequence Length = 160456 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 atcaattaccctgactgcca 92 |||||||||||||||||||| Sbjct: 42808 atcaattaccctgactgcca 42789
>gb|AC007069.6| Arabidopsis thaliana chromosome 2 clone T23K3 map mi320, complete sequence Length = 73009 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 227 tgttttgtgtacgtatgcacagatacat 254 ||||||||||| |||||||| ||||||| Sbjct: 50249 tgttttgtgtatgtatgcactgatacat 50276
>ref|NM_171611.2| Caenorhabditis elegans C04E7.4 (C04E7.4) mRNA, complete cds Length = 2242 Score = 40.1 bits (20), Expect = 5.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 24 aaatttcgattgagttttaaaaaacccggttt 55 ||||||| |||| ||||||||||||||||||| Sbjct: 2040 aaatttcaattg-gttttaaaaaacccggttt 2010
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 gccaccgtcgccgccgacca 367 |||||||||||||||||||| Sbjct: 7487569 gccaccgtcgccgccgacca 7487550
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 ccgtcgccgccgaccaccaccttg 375 ||||||| |||||||||||||||| Sbjct: 18279609 ccgtcgcagccgaccaccaccttg 18279632 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 340 ccgccagtgccaccgtcgccgccg 363 |||||| ||||||||||||||||| Sbjct: 11219999 ccgccactgccaccgtcgccgccg 11219976
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 ccacgccgccagtgccaccgtcgc 358 |||||||||||| ||||||||||| Sbjct: 2017555 ccacgccgccagcgccaccgtcgc 2017578
>gb|AY190950.1| Drosophila willistoni clone DWIF01_1_E5 (D1417) genomic sequence Length = 40487 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 tgctttgatttatgctcgaa 209 |||||||||||||||||||| Sbjct: 4042 tgctttgatttatgctcgaa 4061
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 339 gccgccagtgccaccgtcgccgccgacc 366 ||||||| |||||||| ||||||||||| Sbjct: 773273 gccgccattgccaccgccgccgccgacc 773300 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 339 gccgccagtgccaccgtcgccgccgacc 366 ||||||| |||||||| ||||||||||| Sbjct: 771161 gccgccattgccaccgccgccgccgacc 771188
>dbj|AP005674.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1126F07 Length = 125007 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 340 ccgccagtgccaccgtcgccgccg 363 |||||| ||||||||||||||||| Sbjct: 33977 ccgccactgccaccgtcgccgccg 33954
>dbj|AP004051.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1218_C12 Length = 105861 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 ccgtcgccgccgaccaccaccttg 375 ||||||| |||||||||||||||| Sbjct: 82852 ccgtcgcagccgaccaccaccttg 82875
>dbj|AP004266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0038F10 Length = 153929 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 ccgtcgccgccgaccaccaccttg 375 ||||||| |||||||||||||||| Sbjct: 9104 ccgtcgcagccgaccaccaccttg 9127
>dbj|AK068339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013148N01, full insert sequence Length = 808 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gccaccgtcgccgccgacca 367 |||||||||||||||||||| Sbjct: 462 gccaccgtcgccgccgacca 481
>emb|BX936462.20| Zebrafish DNA sequence from clone CH211-147O6 in linkage group 20, complete sequence Length = 196432 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 acacacaataccctgttctt 152 |||||||||||||||||||| Sbjct: 132516 acacacaataccctgttctt 132497
>dbj|AP004398.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0438G07 Length = 138878 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 340 ccgccagtgccaccgtcgccgccg 363 |||||| ||||||||||||||||| Sbjct: 59975 ccgccactgccaccgtcgccgccg 59952
>gb|AC074311.28| Mus musculus strain C57BL/6J chromosome 1 clone rp23-157j4, complete sequence Length = 185871 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 252 catggatgaaggttcggagctcca 275 ||||||||||||||| |||||||| Sbjct: 129225 catggatgaaggttctgagctcca 129202
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 gccaccgtcgccgccgacca 367 |||||||||||||||||||| Sbjct: 7557655 gccaccgtcgccgccgacca 7557636
>emb|AL929275.8| Mouse DNA sequence from clone RP23-65P13 on chromosome 2, complete sequence Length = 197356 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 agtggcagatggggcacatc 297 |||||||||||||||||||| Sbjct: 88138 agtggcagatggggcacatc 88119
>gb|AC151352.2| Xenopus tropicalis clone ISB-48G11, complete sequence Length = 48240 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 cctgttcttattaaactgta 163 |||||||||||||||||||| Sbjct: 48125 cctgttcttattaaactgta 48106
>emb|AL669860.8| Mouse DNA sequence from clone RP23-227P19 on chromosome 4, complete sequence Length = 131275 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 cagtggcagatggggcacat 296 |||||||||||||||||||| Sbjct: 116127 cagtggcagatggggcacat 116108 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,646,654 Number of Sequences: 3902068 Number of extensions: 3646654 Number of successful extensions: 82784 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 81460 Number of HSP's gapped (non-prelim): 1326 length of query: 394 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 372 effective length of database: 17,147,199,772 effective search space: 6378758315184 effective search space used: 6378758315184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
