ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast61d01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY543537.1| Triticum aestivum expansin EXPB2 mRNA, complete cds Length = 948 Score = 137 bits (69), Expect = 3e-29 Identities = 72/73 (98%) Strand = Plus / Minus Query: 366 tcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 425 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 881 tcagctgtactggacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 822 Query: 426 cttgttggcgacg 438 ||||||||||||| Sbjct: 821 cttgttggcgacg 809 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 309 acttgaccgtagcagctagctgcgtagtagcattac 344 |||||||||||||||||||| ||||||||||||||| Sbjct: 948 acttgaccgtagcagctagccgcgtagtagcattac 913
>ref|NM_197701.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB4 (OSJNBa0010C11.2), mRNA Length = 1340 Score = 121 bits (61), Expect = 2e-24 Identities = 70/73 (95%) Strand = Plus / Minus Query: 366 tcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 425 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 968 tcagctgtactggacgaaggagcggtagaatgtgttgggcctccagttggccgggatgac 909 Query: 426 cttgttggcgacg 438 |||||||||||| Sbjct: 908 gttgttggcgacg 896 Score = 83.8 bits (42), Expect = 4e-13 Identities = 69/74 (93%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 37 ataaattataaaaggcgagagtgggcgggagagcgt-atcttgtacgcctgcctcctcca 95 |||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||| Sbjct: 1227 ataaattataaaag-cgagagtgggcgggagagcgtaaccttgtacgcctacctcctcca 1169 Query: 96 ttttcccacacagc 109 ||||||||||||| Sbjct: 1168 -tttcccacacagc 1156
>gb|AF261272.1| Oryza sativa beta-expansin (EXPB4) mRNA, complete cds Length = 1249 Score = 121 bits (61), Expect = 2e-24 Identities = 70/73 (95%) Strand = Plus / Minus Query: 366 tcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 425 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 924 tcagctgtactggacgaaggagcggtagaatgtgttgggcctccagttggccgggatgac 865 Query: 426 cttgttggcgacg 438 |||||||||||| Sbjct: 864 gttgttggcgacg 852 Score = 83.8 bits (42), Expect = 4e-13 Identities = 69/74 (93%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 37 ataaattataaaaggcgagagtgggcgggagagcgt-atcttgtacgcctgcctcctcca 95 |||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||| Sbjct: 1183 ataaattataaaag-cgagagtgggcgggagagcgtaaccttgtacgcctacctcctcca 1125 Query: 96 ttttcccacacagc 109 ||||||||||||| Sbjct: 1124 -tttcccacacagc 1112
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence Length = 147117 Score = 121 bits (61), Expect = 2e-24 Identities = 70/73 (95%) Strand = Plus / Minus Query: 366 tcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 425 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 16770 tcagctgtactggacgaaggagcggtagaatgtgttgggcctccagttggccgggatgac 16711 Query: 426 cttgttggcgacg 438 |||||||||||| Sbjct: 16710 gttgttggcgacg 16698 Score = 83.8 bits (42), Expect = 4e-13 Identities = 69/74 (93%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 37 ataaattataaaaggcgagagtgggcgggagagcgt-atcttgtacgcctgcctcctcca 95 |||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||| Sbjct: 17029 ataaattataaaag-cgagagtgggcgggagagcgtaaccttgtacgcctacctcctcca 16971 Query: 96 ttttcccacacagc 109 ||||||||||||| Sbjct: 16970 -tttcccacacagc 16958 Score = 46.1 bits (23), Expect = 0.095 Identities = 29/31 (93%) Strand = Plus / Plus Query: 408 ccagttggccgggatgaccttgttggcgacg 438 |||||||||||||||||||| | |||||||| Sbjct: 4107 ccagttggccgggatgacctggctggcgacg 4137
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 121 bits (61), Expect = 2e-24 Identities = 70/73 (95%) Strand = Plus / Minus Query: 366 tcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 425 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 21341757 tcagctgtactggacgaaggagcggtagaatgtgttgggcctccagttggccgggatgac 21341698 Query: 426 cttgttggcgacg 438 |||||||||||| Sbjct: 21341697 gttgttggcgacg 21341685 Score = 83.8 bits (42), Expect = 4e-13 Identities = 69/74 (93%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 37 ataaattataaaaggcgagagtgggcgggagagcgt-atcttgtacgcctgcctcctcca 95 |||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||| Sbjct: 21342016 ataaattataaaag-cgagagtgggcgggagagcgtaaccttgtacgcctacctcctcca 21341958 Query: 96 ttttcccacacagc 109 ||||||||||||| Sbjct: 21341957 -tttcccacacagc 21341945 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 396 ggtgttgggcctccagttggccgggatgaccttgttggcga 436 |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 21317193 ggtgttggccctccagttggccgggatgacctggtgggcga 21317233 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 368 agctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacct 427 ||||| |||| |||| |||||||||| || |||||| |||||| ||||||||||| | Sbjct: 21311303 agctgaactggacgatggagcggtagttggagttgggggaccagttcgccgggatgacgt 21311362 Query: 428 tgttggcgacg 438 ||||||||||| Sbjct: 21311363 tgttggcgacg 21311373 Score = 46.1 bits (23), Expect = 0.095 Identities = 29/31 (93%) Strand = Plus / Plus Query: 408 ccagttggccgggatgaccttgttggcgacg 438 |||||||||||||||||||| | |||||||| Sbjct: 21329093 ccagttggccgggatgacctggctggcgacg 21329123 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 cctcctccattttcccacaca 107 ||||||||||||||||||||| Sbjct: 21311100 cctcctccattttcccacaca 21311120
>dbj|AK105981.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F12, full insert sequence Length = 1290 Score = 121 bits (61), Expect = 2e-24 Identities = 70/73 (95%) Strand = Plus / Minus Query: 366 tcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 425 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 981 tcagctgtactggacgaaggagcggtagaatgtgttgggcctccagttggccgggatgac 922 Query: 426 cttgttggcgacg 438 |||||||||||| Sbjct: 921 gttgttggcgacg 909 Score = 83.8 bits (42), Expect = 4e-13 Identities = 69/74 (93%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 37 ataaattataaaaggcgagagtgggcgggagagcgt-atcttgtacgcctgcctcctcca 95 |||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||| Sbjct: 1240 ataaattataaaag-cgagagtgggcgggagagcgtaaccttgtacgcctacctcctcca 1182 Query: 96 ttttcccacacagc 109 ||||||||||||| Sbjct: 1181 -tttcccacacagc 1169
>dbj|AK103929.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D11, full insert sequence Length = 1266 Score = 121 bits (61), Expect = 2e-24 Identities = 70/73 (95%) Strand = Plus / Minus Query: 366 tcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 425 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 974 tcagctgtactggacgaaggagcggtagaatgtgttgggcctccagttggccgggatgac 915 Query: 426 cttgttggcgacg 438 |||||||||||| Sbjct: 914 gttgttggcgacg 902 Score = 83.8 bits (42), Expect = 4e-13 Identities = 69/74 (93%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 37 ataaattataaaaggcgagagtgggcgggagagcgt-atcttgtacgcctgcctcctcca 95 |||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||| Sbjct: 1233 ataaattataaaag-cgagagtgggcgggagagcgtaaccttgtacgcctacctcctcca 1175 Query: 96 ttttcccacacagc 109 ||||||||||||| Sbjct: 1174 -tttcccacacagc 1162
>dbj|AK101806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K12, full insert sequence Length = 1883 Score = 121 bits (61), Expect = 2e-24 Identities = 70/73 (95%) Strand = Plus / Minus Query: 366 tcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 425 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1558 tcagctgtactggacgaaggagcggtagaatgtgttgggcctccagttggccgggatgac 1499 Query: 426 cttgttggcgacg 438 |||||||||||| Sbjct: 1498 gttgttggcgacg 1486 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/74 (91%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 37 ataaattataaaaggcgagagtgggcgggagagcgt-atcttgtacgcctgcctcctcca 95 |||||||||||||| ||||||||||||||||||| | | ||||||||||| ||||||||| Sbjct: 1817 ataaattataaaag-cgagagtgggcgggagagcataaccttgtacgcctacctcctcca 1759 Query: 96 ttttcccacacagc 109 ||||||||||||| Sbjct: 1758 -tttcccacacagc 1746
>dbj|AK101357.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035B15, full insert sequence Length = 1475 Score = 121 bits (61), Expect = 2e-24 Identities = 70/73 (95%) Strand = Plus / Minus Query: 366 tcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 425 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1162 tcagctgtactggacgaaggagcggtagaatgtgttgggcctccagttggccgggatgac 1103 Query: 426 cttgttggcgacg 438 |||||||||||| Sbjct: 1102 gttgttggcgacg 1090 Score = 83.8 bits (42), Expect = 4e-13 Identities = 69/74 (93%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 37 ataaattataaaaggcgagagtgggcgggagagcgt-atcttgtacgcctgcctcctcca 95 |||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||| Sbjct: 1421 ataaattataaaag-cgagagtgggcgggagagcgtaaccttgtacgcctacctcctcca 1363 Query: 96 ttttcccacacagc 109 ||||||||||||| Sbjct: 1362 -tttcccacacagc 1350
>dbj|AK060096.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G02, full insert sequence Length = 1293 Score = 121 bits (61), Expect = 2e-24 Identities = 70/73 (95%) Strand = Plus / Minus Query: 366 tcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 425 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 980 tcagctgtactggacgaaggagcggtagaatgtgttgggcctccagttggccgggatgac 921 Query: 426 cttgttggcgacg 438 |||||||||||| Sbjct: 920 gttgttggcgacg 908 Score = 83.8 bits (42), Expect = 4e-13 Identities = 69/74 (93%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 37 ataaattataaaaggcgagagtgggcgggagagcgt-atcttgtacgcctgcctcctcca 95 |||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||| Sbjct: 1239 ataaattataaaag-cgagagtgggcgggagagcgtaaccttgtacgcctacctcctcca 1181 Query: 96 ttttcccacacagc 109 ||||||||||||| Sbjct: 1180 -tttcccacacagc 1168
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 121 bits (61), Expect = 2e-24 Identities = 70/73 (95%) Strand = Plus / Minus Query: 366 tcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 425 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 21353020 tcagctgtactggacgaaggagcggtagaatgtgttgggcctccagttggccgggatgac 21352961 Query: 426 cttgttggcgacg 438 |||||||||||| Sbjct: 21352960 gttgttggcgacg 21352948 Score = 83.8 bits (42), Expect = 4e-13 Identities = 69/74 (93%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 37 ataaattataaaaggcgagagtgggcgggagagcgt-atcttgtacgcctgcctcctcca 95 |||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||| Sbjct: 21353279 ataaattataaaag-cgagagtgggcgggagagcgtaaccttgtacgcctacctcctcca 21353221 Query: 96 ttttcccacacagc 109 ||||||||||||| Sbjct: 21353220 -tttcccacacagc 21353208 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 396 ggtgttgggcctccagttggccgggatgaccttgttggcga 436 |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 21328457 ggtgttggccctccagttggccgggatgacctggtgggcga 21328497 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 368 agctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacct 427 ||||| |||| |||| |||||||||| || |||||| |||||| ||||||||||| | Sbjct: 21322567 agctgaactggacgatggagcggtagttggagttgggggaccagttcgccgggatgacgt 21322626 Query: 428 tgttggcgacg 438 ||||||||||| Sbjct: 21322627 tgttggcgacg 21322637 Score = 46.1 bits (23), Expect = 0.095 Identities = 29/31 (93%) Strand = Plus / Plus Query: 408 ccagttggccgggatgaccttgttggcgacg 438 |||||||||||||||||||| | |||||||| Sbjct: 21340357 ccagttggccgggatgacctggctggcgacg 21340387 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 cctcctccattttcccacaca 107 ||||||||||||||||||||| Sbjct: 21322364 cctcctccattttcccacaca 21322384
>gb|BT019137.1| Zea mays clone Contig781.F mRNA sequence Length = 1044 Score = 109 bits (55), Expect = 8e-21 Identities = 67/71 (94%) Strand = Plus / Minus Query: 368 agctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacct 427 |||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| | Sbjct: 564 agctgtactggacgaaggagcggtagaaggtgttggggcgccagttggccgggatgacgt 505 Query: 428 tgttggcgacg 438 ||||||||||| Sbjct: 504 tgttggcgacg 494 Score = 91.7 bits (46), Expect = 2e-15 Identities = 65/70 (92%), Gaps = 1/70 (1%) Strand = Plus / Minus Query: 37 ataaattataaaaggcgagagtgggcgggagagcgtatcttgtacgcctgcctcctccat 96 |||||||||||||| | | |||||||||||||||| | |||||||||||||||||||||| Sbjct: 1008 ataaattataaaag-caacagtgggcgggagagcggagcttgtacgcctgcctcctccat 950 Query: 97 tttcccacac 106 |||||||||| Sbjct: 949 tttcccacac 940
>gb|BT017478.1| Zea mays clone EL01N0408G02.c mRNA sequence Length = 832 Score = 109 bits (55), Expect = 8e-21 Identities = 67/71 (94%) Strand = Plus / Minus Query: 368 agctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacct 427 |||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| | Sbjct: 303 agctgtactggacgaaggagcggtagaaggtgttggggcgccagttggccgggatgacgt 244 Query: 428 tgttggcgacg 438 ||||||||||| Sbjct: 243 tgttggcgacg 233 Score = 85.7 bits (43), Expect = 1e-13 Identities = 66/71 (92%), Gaps = 2/71 (2%) Strand = Plus / Minus Query: 37 ataaattataaaaggcgagagtgggcggg-agagcgtatcttgtacgcctgcctcctcca 95 |||||||||||||| | | |||||||||| |||||||| ||||||||||||||||||||| Sbjct: 748 ataaattataaaag-caacagtgggcggggagagcgtagcttgtacgcctgcctcctcca 690 Query: 96 ttttcccacac 106 ||||||||||| Sbjct: 689 ttttcccacac 679
>gb|AF332181.1|AF332181 Zea mays beta-expansin 8 (expB8) mRNA, complete cds Length = 1479 Score = 109 bits (55), Expect = 8e-21 Identities = 67/71 (94%) Strand = Plus / Minus Query: 368 agctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacct 427 |||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| | Sbjct: 939 agctgtactggacgaaggagcggtagaaggtgttggggcgccagttggccgggatgacgt 880 Query: 428 tgttggcgacg 438 ||||||||||| Sbjct: 879 tgttggcgacg 869 Score = 99.6 bits (50), Expect = 7e-18 Identities = 66/70 (94%), Gaps = 1/70 (1%) Strand = Plus / Minus Query: 37 ataaattataaaaggcgagagtgggcgggagagcgtatcttgtacgcctgcctcctccat 96 |||||||||||||| | | |||||||||||||||||| |||||||||||||||||||||| Sbjct: 1382 ataaattataaaag-caacagtgggcgggagagcgtagcttgtacgcctgcctcctccat 1324 Query: 97 tttcccacac 106 |||||||||| Sbjct: 1323 tttcccacac 1314
>gb|AF332175.1|AF332175 Zea mays beta-expansin 2 (expB2) mRNA, partial cds Length = 907 Score = 109 bits (55), Expect = 8e-21 Identities = 67/71 (94%) Strand = Plus / Minus Query: 368 agctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacct 427 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 526 agctgtactggacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacgt 467 Query: 428 tgttggcgacg 438 | |||||||| Sbjct: 466 tcctggcgacg 456 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 56 agtgggcgggagagcgtatcttgtacgcctgcctcctccattttcccacac 106 |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 820 agtgggcgggagagcgtacattgtacgcctgcctcctccattttcccacac 770
>gb|AY589580.1| Triticum aestivum beta-expansin TaEXPB3 mRNA, complete cds Length = 1013 Score = 97.6 bits (49), Expect = 3e-17 Identities = 64/69 (92%) Strand = Plus / Minus Query: 366 tcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 425 ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 859 tcagctgaactggacgaaggagcggtagtcggtgttgggcctccagttggccgggatgac 800 Query: 426 cttgttggc 434 |||||||| Sbjct: 799 attgttggc 791
>gb|AY543541.1| Triticum aestivum expansin EXPB7 mRNA, complete cds Length = 1056 Score = 97.6 bits (49), Expect = 3e-17 Identities = 64/69 (92%) Strand = Plus / Minus Query: 366 tcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 425 ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 891 tcagctgaactggacgaaggagcggtagtcggtgttgggcctccagttggccgggatgac 832 Query: 426 cttgttggc 434 |||||||| Sbjct: 831 attgttggc 823
>emb|AJ295941.1|FPR295941 Festuca pratensis mRNA for beta expansin B2 (expB2 gene) Length = 1194 Score = 89.7 bits (45), Expect = 7e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 374 actgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgaccttgttgg 433 |||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 884 actggacgaaggagcggtagtcggtgttgggcctccagttggccgggatgatgttgttgg 825 Query: 434 cgacg 438 ||||| Sbjct: 824 cgacg 820
>gb|AY589579.1| Triticum aestivum beta-expansin TaEXPB2 mRNA, complete cds Length = 897 Score = 89.7 bits (45), Expect = 7e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 366 tcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 425 |||||||||||| |||| |||||||||||||||| ||||| |||||||||||||||||| Sbjct: 832 tcagctgtactggacgatggagcggtagaaggtgctgggcgcccagttggccgggatgac 773 Query: 426 cttgt 430 ||||| Sbjct: 772 cttgt 768
>gb|AY543536.1| Triticum aestivum expansin EXPB1 mRNA, complete cds Length = 810 Score = 89.7 bits (45), Expect = 7e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 366 tcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 425 |||||||||||| |||| |||||||||||||||| ||||| |||||||||||||||||| Sbjct: 805 tcagctgtactggacgatggagcggtagaaggtgctgggcgcccagttggccgggatgac 746 Query: 426 cttgt 430 ||||| Sbjct: 745 cttgt 741
>dbj|AK058577.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-F03, full insert sequence Length = 979 Score = 83.8 bits (42), Expect = 4e-13 Identities = 69/74 (93%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 37 ataaattataaaaggcgagagtgggcgggagagcgt-atcttgtacgcctgcctcctcca 95 |||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||| Sbjct: 241 ataaattataaaag-cgagagtgggcgggagagcgtaaccttgtacgcctacctcctcca 183 Query: 96 ttttcccacacagc 109 ||||||||||||| Sbjct: 182 -tttcccacacagc 170
>gb|AY543538.1| Triticum aestivum expansin EXPB3 mRNA, complete cds Length = 834 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 366 tcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgac 425 |||||||||||| |||| ||| |||||||||||| ||||| |||||||||||||||||| Sbjct: 811 tcagctgtactggacgatggaacggtagaaggtgctgggcgcccagttggccgggatgac 752 Query: 426 cttgt 430 ||||| Sbjct: 751 cttgt 747
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 372 gtactgcacgaaggagcggtagaaggtgttgggcctccagttg 414 |||||| |||||||| |||||||||||||||||| |||||||| Sbjct: 157666 gtactggacgaaggaacggtagaaggtgttgggcgtccagttg 157708
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0079B22, from chromosome 3, complete sequence Length = 156933 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 372 gtactgcacgaaggagcggtagaaggtgttgggcctccagttg 414 |||||| |||||||| |||||||||||||||||| |||||||| Sbjct: 91666 gtactggacgaaggaacggtagaaggtgttgggcgtccagttg 91708
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 372 gtactgcacgaaggagcggtagaaggtgttgggcctccagttg 414 |||||| |||||||| |||||||||||||||||| |||||||| Sbjct: 157666 gtactggacgaaggaacggtagaaggtgttgggcgtccagttg 157708
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence Length = 162241 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 372 gtactgcacgaaggagcggtagaaggtgttgggcctccagttg 414 |||||| |||||||| |||||||||||||||||| |||||||| Sbjct: 105000 gtactggacgaaggaacggtagaaggtgttgggcgtccagttg 104958
>dbj|AK070972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069H18, full insert sequence Length = 1019 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 372 gtactgcacgaaggagcggtagaaggtgttgggcctccagttg 414 |||||| |||||||| |||||||||||||||||| |||||||| Sbjct: 889 gtactggacgaaggaacggtagaaggtgttgggcgtccagttg 847
>ref|NM_197699.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB2 (OSJNBb0014I11.2), mRNA Length = 1262 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 396 ggtgttgggcctccagttggccgggatgaccttgttggcga 436 |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 825 ggtgttggccctccagttggccgggatgacctggtgggcga 785
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete sequence Length = 135510 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 396 ggtgttgggcctccagttggccgggatgaccttgttggcga 436 |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 17166 ggtgttggccctccagttggccgggatgacctggtgggcga 17126 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 368 agctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacct 427 ||||| |||| |||| |||||||||| || |||||| |||||| ||||||||||| | Sbjct: 23056 agctgaactggacgatggagcggtagttggagttgggggaccagttcgccgggatgacgt 22997 Query: 428 tgttggcgacg 438 ||||||||||| Sbjct: 22996 tgttggcgacg 22986 Score = 46.1 bits (23), Expect = 0.095 Identities = 29/31 (93%) Strand = Plus / Minus Query: 408 ccagttggccgggatgaccttgttggcgacg 438 |||||||||||||||||||| | |||||||| Sbjct: 5266 ccagttggccgggatgacctggctggcgacg 5236 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 cctcctccattttcccacaca 107 ||||||||||||||||||||| Sbjct: 23259 cctcctccattttcccacaca 23239
>gb|U95968.1|OSU95968 Oryza sativa beta-expansin (EXPB2) mRNA, complete cds Length = 999 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 396 ggtgttgggcctccagttggccgggatgaccttgttggcga 436 |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 825 ggtgttggccctccagttggccgggatgacctggtgggcga 785
>dbj|AK104128.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-F04, full insert sequence Length = 1043 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 396 ggtgttgggcctccagttggccgggatgaccttgttggcga 436 |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 824 ggtgttggccctccagttggccgggatgacctggtgggcga 784
>dbj|AK064012.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H01, full insert sequence Length = 1794 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 402 gggcctccagttggccgggatgaccttgttggcgacg 438 ||||||||||| |||||||||||| |||||||||||| Sbjct: 944 gggcctccagtaggccgggatgacgttgttggcgacg 908
>dbj|AK061068.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-C01, full insert sequence Length = 1259 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 396 ggtgttgggcctccagttggccgggatgaccttgttggcga 436 |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 822 ggtgttggccctccagttggccgggatgacctggtgggcga 782
>dbj|AK058895.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F11, full insert sequence Length = 1026 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 396 ggtgttgggcctccagttggccgggatgaccttgttggcga 436 |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 815 ggtgttggccctccagttggccgggatgacctggtgggcga 775
>ref|NM_197698.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB6 (OSJNBb0014I11.3), mRNA Length = 1240 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 368 agctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacct 427 ||||| |||| |||| |||||||||| || |||||| |||||| ||||||||||| | Sbjct: 922 agctgaactggacgatggagcggtagttggagttgggggaccagttcgccgggatgacgt 863 Query: 428 tgttggcgacg 438 ||||||||||| Sbjct: 862 tgttggcgacg 852 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 cctcctccattttcccacaca 107 ||||||||||||||||||||| Sbjct: 1125 cctcctccattttcccacaca 1105
>gb|AF261276.2| Oryza sativa beta-expansin (EXPB8) mRNA, partial cds Length = 933 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 372 gtactgcacgaaggagcggtagaaggtgttgggcctccagttg 414 |||||| |||||||| ||||| |||||||||||| |||||||| Sbjct: 807 gtactggacgaaggaacggtaaaaggtgttgggcgtccagttg 765
>gb|AF261274.1| Oryza sativa beta-expansin (EXPB6) mRNA, complete cds Length = 1250 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 368 agctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacct 427 ||||| |||| |||| |||||||||| || |||||| |||||| ||||||||||| | Sbjct: 915 agctgaactggacgatggagcggtagttggagttgggggaccagttcgccgggatgacgt 856 Query: 428 tgttggcgacg 438 ||||||||||| Sbjct: 855 tgttggcgacg 845 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 cctcctccattttcccacaca 107 ||||||||||||||||||||| Sbjct: 1118 cctcctccattttcccacaca 1098
>emb|AJ295942.1|FPR295942 Festuca pratensis mRNA for beta expansin B3 (expB3 gene) Length = 1219 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 364 cctcagctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatg 423 ||||||||| |||| |||| |||||||||| ||| | |||| ||| |||||||||||| Sbjct: 908 cctcagctgaactggacgatggagcggtaggaggcgctgggggcccaattggccgggatg 849 Query: 424 accttgttggcgacg 438 | ||||| ||||||| Sbjct: 848 atcttgtcggcgacg 834
>gb|AF332178.1|AF332178 Zea mays beta-expansin 5 (expB5) mRNA, partial cds Length = 650 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 384 ggagcggtagaaggtgttgggcctccagttggccgggatgacc 426 |||||||||| ||||||||||| ||||||||| ||||||||| Sbjct: 517 ggagcggtagtaggtgttgggcgcccagttggcagggatgacc 475
>dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A09, full insert sequence Length = 1257 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 368 agctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacct 427 ||||| |||| |||| |||||||||| || |||||| |||||| ||||||||||| | Sbjct: 935 agctgaactggacgatggagcggtagttggagttgggggaccagttcgccgggatgacgt 876 Query: 428 tgttggcgacg 438 ||||||||||| Sbjct: 875 tgttggcgacg 865 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 cctcctccattttcccacaca 107 ||||||||||||||||||||| Sbjct: 1138 cctcctccattttcccacaca 1118
>dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A02, full insert sequence Length = 1257 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 368 agctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacct 427 ||||| |||| |||| |||||||||| || |||||| |||||| ||||||||||| | Sbjct: 935 agctgaactggacgatggagcggtagttggagttgggggaccagttcgccgggatgacgt 876 Query: 428 tgttggcgacg 438 ||||||||||| Sbjct: 875 tgttggcgacg 865 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 cctcctccattttcccacaca 107 ||||||||||||||||||||| Sbjct: 1138 cctcctccattttcccacaca 1118
>dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061F13, full insert sequence Length = 1263 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 368 agctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacct 427 ||||| |||| |||| |||||||||| || |||||| |||||| ||||||||||| | Sbjct: 941 agctgaactggacgatggagcggtagttggagttgggggaccagttcgccgggatgacgt 882 Query: 428 tgttggcgacg 438 ||||||||||| Sbjct: 881 tgttggcgacg 871 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 cctcctccattttcccacaca 107 ||||||||||||||||||||| Sbjct: 1144 cctcctccattttcccacaca 1124
>dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D06, full insert sequence Length = 1259 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 368 agctgtactgcacgaaggagcggtagaaggtgttgggcctccagttggccgggatgacct 427 ||||| |||| |||| |||||||||| || |||||| |||||| ||||||||||| | Sbjct: 935 agctgaactggacgatggagcggtagttggagttgggggaccagttcgccgggatgacgt 876 Query: 428 tgttggcgacg 438 ||||||||||| Sbjct: 875 tgttggcgacg 865 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 cctcctccattttcccacaca 107 ||||||||||||||||||||| Sbjct: 1140 cctcctccattttcccacaca 1120
>gb|AY111405.1| Zea mays CL5426_1 mRNA sequence Length = 528 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 388 cggtagaaggtgttgggcctccagttggccgggatgaccttgttggc 434 |||||| |||||||||| |||||||||||||||||||| |||||| Sbjct: 279 cggtagtaggtgttgggaacccagttggccgggatgacctggttggc 325
>gb|AY589581.1| Triticum aestivum beta-expansin TaEXPB4 mRNA, complete cds Length = 898 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 397 gtgttgggcctccagttggccgggatgac 425 |||| |||||||||||||||||||||||| Sbjct: 821 gtgtcgggcctccagttggccgggatgac 793
>ref|NM_197700.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB3 (OSJNBb0014I11.1), mRNA Length = 904 Score = 46.1 bits (23), Expect = 0.095 Identities = 29/31 (93%) Strand = Plus / Minus Query: 408 ccagttggccgggatgaccttgttggcgacg 438 |||||||||||||||||||| | |||||||| Sbjct: 859 ccagttggccgggatgacctggctggcgacg 829
>gb|AF261271.1| Oryza sativa beta-expansin (EXPB3) mRNA, complete cds Length = 1319 Score = 46.1 bits (23), Expect = 0.095 Identities = 29/31 (93%) Strand = Plus / Minus Query: 408 ccagttggccgggatgaccttgttggcgacg 438 |||||||||||||||||||| | |||||||| Sbjct: 858 ccagttggccgggatgacctggctggcgacg 828
>dbj|AK105318.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-F11, full insert sequence Length = 1031 Score = 46.1 bits (23), Expect = 0.095 Identities = 29/31 (93%) Strand = Plus / Minus Query: 408 ccagttggccgggatgaccttgttggcgacg 438 |||||||||||||||||||| | |||||||| Sbjct: 614 ccagttggccgggatgacctggctggcgacg 584
>dbj|AK100959.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140O05, full insert sequence Length = 1313 Score = 46.1 bits (23), Expect = 0.095 Identities = 29/31 (93%) Strand = Plus / Minus Query: 408 ccagttggccgggatgaccttgttggcgacg 438 |||||||||||||||||||| | |||||||| Sbjct: 870 ccagttggccgggatgacctggctggcgacg 840
>emb|AL607128.8| Human DNA sequence from clone RP11-444I9 on chromosome 10 Contains a novel gene (FLJ14374), a CDA11 protein (CDA11) pseudogene and two novel genes, complete sequence Length = 134242 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 105 acagcccttttcccatttgcca 126 |||||||||||||||||||||| Sbjct: 31635 acagcccttttcccatttgcca 31614
>gb|AF332180.1|AF332180 Zea mays beta-expansin 7 (expB7) mRNA, complete cds Length = 1173 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Minus Query: 388 cggtagaaggtgttgggcctccagttggccgggatgac 425 |||||| ||||||||||| ||||||||| |||||||| Sbjct: 852 cggtagtaggtgttgggcacccagttggcggggatgac 815
>ref|NM_183859.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1074 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 gacgcacccgcacccgcaccc 196 ||||||||||||||||||||| Sbjct: 342 gacgcacccgcacccgcaccc 362
>gb|AC023315.4| Homo sapiens chromosome 17, clone RP11-333J10, complete sequence Length = 135692 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 86 gcctcctccattttcccacacagcc 110 |||||||||||| |||||||||||| Sbjct: 19002 gcctcctccattatcccacacagcc 19026
>gb|AC003103.2| Homo sapiens chromosome 17, clone CTC-268N12, complete sequence Length = 101800 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 86 gcctcctccattttcccacacagcc 110 |||||||||||| |||||||||||| Sbjct: 3415 gcctcctccattatcccacacagcc 3391
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 gacgcacccgcacccgcaccc 196 ||||||||||||||||||||| Sbjct: 12729457 gacgcacccgcacccgcaccc 12729437 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 cgcacccgcacccgcaccca 197 |||||||||||||||||||| Sbjct: 24816460 cgcacccgcacccgcaccca 24816479
>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489E06 Length = 140229 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 gacgcacccgcacccgcaccc 196 ||||||||||||||||||||| Sbjct: 9856 gacgcacccgcacccgcaccc 9836
>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0554D10 Length = 158723 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 gacgcacccgcacccgcaccc 196 ||||||||||||||||||||| Sbjct: 96486 gacgcacccgcacccgcaccc 96466
>dbj|D12583.1|RERALN Rhodococcus rhodochrous aliphatic nitrilase gene, complete cds Length = 1653 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 gacgcacccgcacccgcaccc 196 ||||||||||||||||||||| Sbjct: 1403 gacgcacccgcacccgcaccc 1423
>ref|XM_479886.1| Oryza sativa (japonica cultivar-group), mRNA Length = 480 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 cgggatgaccttgttggcga 436 |||||||||||||||||||| Sbjct: 348 cgggatgaccttgttggcga 367
>ref|NM_192855.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3009 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 cgcacccgcacccgcaccca 197 |||||||||||||||||||| Sbjct: 48 cgcacccgcacccgcaccca 29
>ref|XM_362052.1| Magnaporthe grisea 70-15 hypothetical protein (MG04497.4) partial cds Length = 1203 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 cgcacccgcacccgcaccca 197 |||||||||||||||||||| Sbjct: 81 cgcacccgcacccgcaccca 100
>ref|NM_000534.3| Homo sapiens PMS1 postmeiotic segregation increased 1 (S. cerevisiae) (PMS1), mRNA Length = 3239 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 cgcacccgcacccgcaccca 197 |||||||||||||||||||| Sbjct: 129 cgcacccgcacccgcaccca 110
>ref|XM_865675.1| PREDICTED: Bos taurus similar to Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4), transcript variant 1 (LOC613955), mRNA Length = 1425 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 cgcacccgcacccgcaccca 197 |||||||||||||||||||| Sbjct: 176 cgcacccgcacccgcaccca 195
>gb|AC149031.1| Rhinolophus ferrumequinum clone VMRC7-44G7, complete sequence Length = 192138 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 ccacggacgcacccgcaccc 190 |||||||||||||||||||| Sbjct: 140168 ccacggacgcacccgcaccc 140187
>gb|BC036376.1| Homo sapiens PMS1 postmeiotic segregation increased 1 (S. cerevisiae), mRNA (cDNA clone IMAGE:4822417) Length = 2365 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 cgcacccgcacccgcaccca 197 |||||||||||||||||||| Sbjct: 137 cgcacccgcacccgcaccca 118
>ref|XM_754579.1| Ustilago maydis 521 hypothetical protein (UM03525.1) partial mRNA Length = 3930 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 cgcacccgcacccgcaccca 197 |||||||||||||||||||| Sbjct: 3717 cgcacccgcacccgcaccca 3698
>ref|XM_386348.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06172.1) partial mRNA Length = 2481 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 acgcacccgcacccgcaccc 196 |||||||||||||||||||| Sbjct: 1487 acgcacccgcacccgcaccc 1506
>ref|XM_540459.2| PREDICTED: Canis familiaris similar to trinucleotide repeat containing 6C (LOC483340), mRNA Length = 6276 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 cgcacccgcacccgcaccca 197 |||||||||||||||||||| Sbjct: 765 cgcacccgcacccgcaccca 746
>gb|AC122811.4| Mus musculus BAC clone RP23-281J12 from 12, complete sequence Length = 169618 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 acctttttctcacctagaaa 222 |||||||||||||||||||| Sbjct: 164946 acctttttctcacctagaaa 164927
>gb|BC008410.1| Homo sapiens PMS1 postmeiotic segregation increased 1 (S. cerevisiae), mRNA (cDNA clone IMAGE:4097623), complete cds Length = 1906 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 cgcacccgcacccgcaccca 197 |||||||||||||||||||| Sbjct: 63 cgcacccgcacccgcaccca 44
>gb|AC123898.40| Medicago truncatula clone mth2-31m6, complete sequence Length = 152299 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 gcacccgcacccgcacccaa 198 |||||||||||||||||||| Sbjct: 151871 gcacccgcacccgcacccaa 151852
>emb|AL354806.22| Human DNA sequence from clone RP11-521J24 on chromosome 13 Contains a novel gene, complete sequence Length = 198959 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 tactatataaattataaaag 50 |||||||||||||||||||| Sbjct: 103980 tactatataaattataaaag 103999
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 acgcacccgcacccgcaccc 196 |||||||||||||||||||| Sbjct: 251328 acgcacccgcacccgcaccc 251309
>emb|AL590388.4| Mouse DNA sequence from clone RP23-480B19 on chromosome 13 Contains the Slc17a1 gene for solute carrier family 17 (vesicular glutamate transporter) member 1, two genes for novel solute carrier family 17 (Slc17) members, two novel genes, the gene for a novel C3HC4 type zinc finger (ring finger) protein, the gene for an H2a, an H2b, two genes for H3 and two genes for H4 histone family members, a H2a histone family pseudogene, the H1f1 and H1f2 genes for H1 histone family members 1 and 2, the H3f2 gene for H3 histone family, member 2 (H3.2), a novel pseudogene, the Hfe gene for hemochromatosis protein (Mr2) and two CpG islands, complete sequence Length = 186062 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 cgcacccgcacccgcaccca 197 |||||||||||||||||||| Sbjct: 129434 cgcacccgcacccgcaccca 129453
>gb|BC066989.1| Homo sapiens cDNA clone IMAGE:5267335 Length = 1783 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 cgcacccgcacccgcaccca 197 |||||||||||||||||||| Sbjct: 977 cgcacccgcacccgcaccca 958
>gb|AF395701.1|AF395701S1 Homo sapiens ORMDL1 gene, exons 1, 2, and 3 Length = 7211 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 cgcacccgcacccgcaccca 197 |||||||||||||||||||| Sbjct: 4587 cgcacccgcacccgcaccca 4606
>gb|DQ428284.1| Sorghum propinquum locus PRC0324 genomic sequence Length = 477 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428283.1| Sorghum bicolor voucher PI585454 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428282.1| Sorghum bicolor voucher PI267539 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428281.1| Sorghum bicolor voucher PI267408 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428280.1| Sorghum bicolor voucher PI221607 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428279.1| Sorghum bicolor voucher PI152702 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428278.1| Sorghum bicolor voucher NSL92371 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428277.1| Sorghum bicolor voucher NSL87902 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428276.1| Sorghum bicolor voucher NSL87666 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428275.1| Sorghum bicolor voucher NSL77217 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428274.1| Sorghum bicolor voucher NSL77034 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428273.1| Sorghum bicolor voucher NSL56174 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428272.1| Sorghum bicolor voucher NSL56003 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428271.1| Sorghum bicolor voucher NSL55243 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428270.1| Sorghum bicolor voucher NSL51365 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428269.1| Sorghum bicolor voucher NSL51030 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428268.1| Sorghum bicolor voucher NSL50875 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>gb|DQ428267.1| Sorghum bicolor voucher BTx623 locus PRC0324 genomic sequence Length = 467 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 tccagttggccgggatgaccttgttggc 434 ||||||||||||||||||| ||| |||| Sbjct: 275 tccagttggccgggatgacgttgctggc 248
>ref|NM_079576.1| Drosophila melanogaster nervous fingers 2 CG12809-RA (nerfin-2), mRNA Length = 2088 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gacgcacccgcacccgcacc 195 |||||||||||||||||||| Sbjct: 21 gacgcacccgcacccgcacc 40
>gb|AC148971.3| Medicago truncatula chromosome 2 BAC clone mth2-79e23, complete sequence Length = 108394 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 gcacccgcacccgcacccaa 198 |||||||||||||||||||| Sbjct: 73623 gcacccgcacccgcacccaa 73642
>gb|AY267352.1| Homo sapiens PMS1 postmeiotic segregation increased 1 (S. cerevisiae) (PMS1) gene, complete cds Length = 106234 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 cgcacccgcacccgcaccca 197 |||||||||||||||||||| Sbjct: 1886 cgcacccgcacccgcaccca 1867
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 acgcacccgcacccgcaccc 196 |||||||||||||||||||| Sbjct: 2019222 acgcacccgcacccgcaccc 2019241
>gb|AE003738.3| Drosophila melanogaster chromosome 3R, section 76 of 118 of the complete sequence Length = 287397 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cacacccacccaaccagata 257 |||||||||||||||||||| Sbjct: 220382 cacacccacccaaccagata 220401
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 cgggatgaccttgttggcga 436 |||||||||||||||||||| Sbjct: 1467028 cgggatgaccttgttggcga 1467009
>gb|AC009915.5|AC009915 Drosophila melanogaster, chromosome 3R, region 94A-94A, BAC clone BACR09L14, complete sequence Length = 167368 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cacacccacccaaccagata 257 |||||||||||||||||||| Sbjct: 130202 cacacccacccaaccagata 130221
>gb|AC111001.4| Homo sapiens BAC clone RP13-933J18 from 4, complete sequence Length = 119175 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cccaaccaaacctttttctc 213 |||||||||||||||||||| Sbjct: 66963 cccaaccaaacctttttctc 66944
>gb|AC112232.5| Homo sapiens BAC clone RP11-166K6 from 4, complete sequence Length = 171050 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cccaaccaaacctttttctc 213 |||||||||||||||||||| Sbjct: 62556 cccaaccaaacctttttctc 62537
>gb|AC009183.5|AC009183 Drosophila melanogaster, chromosome 3R, region 85F-85F, BAC clone BACR39F04, complete sequence Length = 192055 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gacgcacccgcacccgcacc 195 |||||||||||||||||||| Sbjct: 92628 gacgcacccgcacccgcacc 92647
>gb|AC132265.4| Mus musculus BAC clone RP24-373J20 from chromosome 10, complete sequence Length = 178780 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccattttcccacacagccct 112 |||||||||||||||||||| Sbjct: 145284 ccattttcccacacagccct 145303
>gb|AC151828.3| Mus musculus BAC clone RP24-444L19 from chromosome 10, complete sequence Length = 222344 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccattttcccacacagccct 112 |||||||||||||||||||| Sbjct: 51859 ccattttcccacacagccct 51878
>gb|AC013468.12| Homo sapiens BAC clone RP11-455J20 from 2, complete sequence Length = 84115 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 cgcacccgcacccgcaccca 197 |||||||||||||||||||| Sbjct: 76924 cgcacccgcacccgcaccca 76905
>emb|BX005481.11| Zebrafish DNA sequence from clone CH211-79C1 in linkage group 1, complete sequence Length = 170604 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 acctttttctcacctagaaa 222 |||||||||||||||||||| Sbjct: 84168 acctttttctcacctagaaa 84149
>dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0501G01 Length = 154561 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 cgcacccgcacccgcaccca 197 |||||||||||||||||||| Sbjct: 39580 cgcacccgcacccgcaccca 39599
>dbj|AP004166.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1499_A07 Length = 132146 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 cgggatgaccttgttggcga 436 |||||||||||||||||||| Sbjct: 76933 cgggatgaccttgttggcga 76914
>gb|AE003685.5| Drosophila melanogaster chromosome 3R, section 23 of 118 of the complete sequence Length = 241476 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gacgcacccgcacccgcacc 195 |||||||||||||||||||| Sbjct: 151243 gacgcacccgcacccgcacc 151262
>gb|AC108811.12| Mus musculus chromosome 8, clone RP23-284C19, complete sequence Length = 212270 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 cacacacccacccaaccaga 255 |||||||||||||||||||| Sbjct: 69354 cacacacccacccaaccaga 69335
>gb|AC140111.3| Mus musculus BAC clone RP23-16F4 from 12, complete sequence Length = 175729 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 acctttttctcacctagaaa 222 |||||||||||||||||||| Sbjct: 59629 acctttttctcacctagaaa 59610
>gb|AC132435.3| Mus musculus BAC clone RP23-223L12 from 10, complete sequence Length = 198383 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 actcatctctcacttcccta 153 |||||||||||||||||||| Sbjct: 85085 actcatctctcacttcccta 85104
>gb|M81739.1|STMHUR S.aureofaciens hydroxyurea resistance (hur) gene, complete cds Length = 1843 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 acggacgcacccgcacccgcaccc 196 ||||| |||||||||||||||||| Sbjct: 1186 acggaagcacccgcacccgcaccc 1163
>dbj|AB006462.1| Homo sapiens hPMS1 gene, promoter region and exon 1 Length = 1390 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 cgcacccgcacccgcaccca 197 |||||||||||||||||||| Sbjct: 1288 cgcacccgcacccgcaccca 1269 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,231,495 Number of Sequences: 3902068 Number of extensions: 3231495 Number of successful extensions: 69598 Number of sequences better than 10.0: 116 Number of HSP's better than 10.0 without gapping: 117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69178 Number of HSP's gapped (non-prelim): 395 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
