ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast61c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COMT1_COFCA (Q8LL87) Caffeic acid 3-O-methyltransferase (EC 2.1.... 29 2.4
2OMT1_ARATH (Q9FK25) Quercetin 3-O-methyltransferase 1 (EC 2.1.1.... 28 4.2
3COMT1_CATRO (Q8W013) Caffeic acid 3-O-methyltransferase (EC 2.1.... 28 5.4
4COMT1_POPTM (Q00763) Caffeic acid 3-O-methyltransferase 1 (EC 2.... 27 9.3
5TRAF3_HUMAN (Q13114) TNF receptor-associated factor 3 (CD40 rece... 27 9.3
6TALA_POVHA (P03075) Large T antigen 27 9.3

>COMT1_COFCA (Q8LL87) Caffeic acid 3-O-methyltransferase (EC 2.1.1.68)|
           (S-adenosysl-L-methionine:caffeic acid
           3-O-methyltransferase) (COMT) (CAOMT)
          Length = 350

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 104 PKHIGVDHKTGDLFYSVPWKKLASGSWV 187
           P H GV+H  GD+F SVP        W+
Sbjct: 227 PSHSGVEHVGGDMFVSVPKGDAIFMKWI 254



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>OMT1_ARATH (Q9FK25) Quercetin 3-O-methyltransferase 1 (EC 2.1.1.76) (AtOMT1)|
           (Flavonol 3-O-methyltransferase 1)
          Length = 363

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 104 PKHIGVDHKTGDLFYSVPWKKLASGSWV 187
           P H G++H  GD+F SVP        W+
Sbjct: 238 PSHPGIEHVGGDMFVSVPKGDAIFMKWI 265



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>COMT1_CATRO (Q8W013) Caffeic acid 3-O-methyltransferase (EC 2.1.1.68)|
           (S-adenosysl-L-methionine:caffeic acid
           3-O-methyltransferase) (COMT) (CAOMT)
          Length = 363

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 104 PKHIGVDHKTGDLFYSVPWKKLASGSWV 187
           P + GVDH  GD+F SVP        W+
Sbjct: 240 PSYPGVDHVGGDMFVSVPKGDAIFMKWI 267



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>COMT1_POPTM (Q00763) Caffeic acid 3-O-methyltransferase 1 (EC 2.1.1.68)|
           (S-adenosysl-L-methionine:caffeic acid
           3-O-methyltransferase 1) (COMT-1) (CAOMT-1)
          Length = 365

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 104 PKHIGVDHKTGDLFYSVPWKKLASGSWV 187
           P + GV+H  GD+F SVP        W+
Sbjct: 240 PSYPGVEHVGGDMFVSVPKADAVFMKWI 267



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>TRAF3_HUMAN (Q13114) TNF receptor-associated factor 3 (CD40|
          receptor-associated factor 1) (CRAF1) (CD40-binding
          protein) (CD40BP) (LMP1-associated protein) (LAP1)
          (CAP-1)
          Length = 568

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 9/16 (56%), Positives = 15/16 (93%)
 Frame = -3

Query: 48 WK*KECHVLLCSPKKT 1
          +K ++CH++LCSPK+T
Sbjct: 51 YKCEKCHLVLCSPKQT 66



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>TALA_POVHA (P03075) Large T antigen|
          Length = 751

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 34  FLLFPTKQRMRTTYVRIDRYIRSSETYRSRSQNRRFILFST 156
           F+++ TK++    Y +ID+Y    +      Q   F++F T
Sbjct: 284 FIIYSTKEKCEVLYEQIDKYNPDYKGIFIMKQTEAFVMFMT 324


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,220,177
Number of Sequences: 219361
Number of extensions: 728139
Number of successful extensions: 1622
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1622
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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