ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast61b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HUTH_BACHK (Q6HFE9) Histidine ammonia-lyase (EC 4.3.1.3) (Histid... 31 1.3
2HUTH_BACC1 (Q733H8) Histidine ammonia-lyase (EC 4.3.1.3) (Histid... 31 1.3
3HUTH_BACAN (Q81Y45) Histidine ammonia-lyase (EC 4.3.1.3) (Histid... 31 1.3
4HUTH_BACCR (Q81AC6) Histidine ammonia-lyase (EC 4.3.1.3) (Histid... 31 1.3
5SYNJ2_MOUSE (Q9D2G5) Synaptojanin-2 (EC 3.1.3.36) (Synaptic inos... 30 1.7
6GATA_RHIME (Q92QK7) Glutamyl-tRNA(Gln) amidotransferase subunit ... 30 2.9
7GATA_RHILO (Q98M95) Glutamyl-tRNA(Gln) amidotransferase subunit ... 29 3.7
8SYNJ2_RAT (O55207) Synaptojanin-2 (EC 3.1.3.36) (Synaptic inosit... 29 3.7
9SYC_SYNEL (Q8DHW6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst... 29 3.7
10SYC_ANASP (Q8YXW5) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst... 28 8.3

>HUTH_BACHK (Q6HFE9) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)|
          Length = 505

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 121 LKRSYLETDGVVSCPSKMAVVVTCTRTVE 35
           +KR  LE +GV +CP+ M  V  C   VE
Sbjct: 14  MKRLLLEGEGVTACPNSMQKVAECREVVE 42



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>HUTH_BACC1 (Q733H8) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)|
          Length = 505

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 121 LKRSYLETDGVVSCPSKMAVVVTCTRTVE 35
           +KR  LE +GV +CP+ M  V  C   VE
Sbjct: 14  MKRLLLEGEGVTACPTSMQKVAECREVVE 42



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>HUTH_BACAN (Q81Y45) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)|
          Length = 505

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 121 LKRSYLETDGVVSCPSKMAVVVTCTRTVE 35
           +KR  LE +GV +CP+ M  V  C   VE
Sbjct: 14  MKRLLLEGEGVTACPTSMQKVAECREVVE 42



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>HUTH_BACCR (Q81AC6) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)|
          Length = 506

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 121 LKRSYLETDGVVSCPSKMAVVVTCTRTVE 35
           +KR  LE +GV +CP+ M  V  C   VE
Sbjct: 15  MKRLLLEGEGVTACPTSMQKVAECREVVE 43



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>SYNJ2_MOUSE (Q9D2G5) Synaptojanin-2 (EC 3.1.3.36) (Synaptic|
           inositol-1,4,5-trisphosphate 5-phosphatase 2)
          Length = 1434

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = -3

Query: 176 FRVYIHSFCFVCSHLVKSLKTLIFRNGWSSFLPEQDG--SGCNLYAYS*IQW-----YRS 18
           F+++  SFCFVCSHL      +  RN     +  +    SG N++++  + W     YR 
Sbjct: 672 FQLHSTSFCFVCSHLTAGQSQVKERNEDYREITHKLSFPSGRNIFSHDYVFWCGDFNYRI 731

Query: 17  EQTFQ 3
           + T++
Sbjct: 732 DLTYE 736



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>GATA_RHIME (Q92QK7) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 493

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 214 GTEGVHTNVCRHILECIFTHFASYV 140
           GTEG+HT  C HIL+     + S V
Sbjct: 83  GTEGIHTQACSHILDGFEPRYESTV 107



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>GATA_RHILO (Q98M95) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 521

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 214 GTEGVHTNVCRHILE 170
           GTEGVHT  C H+L+
Sbjct: 83  GTEGVHTQACSHVLD 97



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>SYNJ2_RAT (O55207) Synaptojanin-2 (EC 3.1.3.36) (Synaptic|
           inositol-1,4,5-trisphosphate 5-phosphatase 2)
          Length = 1496

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
 Frame = -3

Query: 176 FRVYIHSFCFVCSHLVKSLKTLIFRNGWSSFLPEQDG--SGCNLYAYS*IQW-----YRS 18
           F+ +  SFCF+CSHL      +  RN     +  +    SG N++++  + W     YR 
Sbjct: 689 FQFHSTSFCFICSHLTAGQSQVKERNEDYREITHKLSFPSGRNIFSHDYVFWCGDFNYRI 748

Query: 17  EQTFQ 3
           + T++
Sbjct: 749 DLTYE 753



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>SYC_SYNEL (Q8DHW6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
          ligase) (CysRS)
          Length = 486

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 29 TVFNCTRTSYNHCHLARARNY 91
          T++ C  T Y++CHL  AR+Y
Sbjct: 25 TIYACGVTVYDYCHLGHARSY 45



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>SYC_ANASP (Q8YXW5) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 486

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 2   IETFARSCTTVFNCTRTSYNHCHLARARNYSI 97
           +ET       ++ C  T Y++CHL  AR+Y +
Sbjct: 16  LETVEPGKVKMYCCGVTVYDYCHLGHARSYIV 47


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,256,972
Number of Sequences: 219361
Number of extensions: 962179
Number of successful extensions: 2114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2114
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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