>S35B1_XENTR (Q8AXS6) Solute carrier family 35 member B1|
          Length = 323

 Score = 36.2 bits (82), Expect = 0.032
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -3

Query: 391 GGRGARVLINFVGVFACYSYYGYGAPTTSSYTLLLLFG-SENGKRVKGVAALPLLECL 221
           G  GAR+L+ F+GVF CY YYG    T +  T    +G  E  ++ +   +L  ++C+
Sbjct: 8   GSGGARLLVCFLGVFVCYFYYGILQETITRGT----YGEGEKQEKFRFALSLVFVQCI 61

>S35B1_XENLA (Q6GQ70) Solute carrier family 35 member B1 (Endoplasmic reticulum|
           nucleotide sugar transporter 1)
          Length = 320

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -3

Query: 382 GARVLINFVGVFACYSYYGYGAPTTSSYTLLLLFG-SENGKRVKGVAALPLLECL 221
           G R+L+ F+GVF CY YYG    T +  T    +G  E  ++ +   +L  ++C+
Sbjct: 9   GLRLLVCFLGVFVCYFYYGILQETITRRT----YGEGEKQEKFRFALSLVFVQCI 59

>YE49_HELPJ (Q9ZJG9) UPF0161 protein jhp_1342|
          Length = 118

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
 Frame = -3

Query: 316 PTTSSYTLLLLFGSENGKRVKGVAALPLLECLPVAELG-----RWLRRWSLAYCQKG-SR 155
           PT S+Y L LL   E+     G  A+ +L C P    G       L+R SL    K  +R
Sbjct: 36  PTCSNYALWLLC-FESPLVAMGKIAIRILSCNPFCSGGIAYPTTRLKRPSLLQSHKDFNR 94

Query: 154 VFPSVSFWLVSVYFSFHMYYAPK 86
            F +++FWLV    S   YY  K
Sbjct: 95  NFKTITFWLVPTTKSRATYYIIK 117

>PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)|
          Length = 1004

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
 Frame = +1

Query: 64  HESCAFAPLGHSTCETKSRQTPTKTKQMERHETLFGNMPTTNASTT---------GLAQP 216
           H+S A   +G S+C  KS++TP  T     +  +  N P   +S T         G   P
Sbjct: 512 HQSPALEDIGCSSCAEKSKKTPCGTANGPVNTEVKANGPHLYSSPTDSTDPRRLPGANTP 571

Query: 217 QAGIPAAVGQPHPL 258
             G+    G P PL
Sbjct: 572 LPGLSHRQGWPRPL 585

>BLNK_MOUSE (Q9QUN3) B-cell linker protein (Cytoplasmic adapter protein)|
           (B-cell adapter containing SH2 domain protein) (B-cell
           adapter containing Src homology 2 domain protein) (Src
           homology 2 domain-containing leukocyte protein of 65
           kDa) (Slp-65) (Lymp
          Length = 457

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 214 PQAGIPAAVGQPHPLLF-SHFPNQKEEAKCRSWW*EHRNRSRSNKQTHRRN*SG 372
           P+AG PAA G  H   F S F +Q+ E   + W+    +R  + +  HR N  G
Sbjct: 315 PEAGSPAADGPFHSFPFNSTFADQEAELLGKPWYAGACDRKSAEEALHRSNKDG 368

>S35B1_CHICK (Q8AWB6) Solute carrier family 35 member B1 (Endoplasmic reticulum|
           nucleotide sugar transporter 1)
          Length = 325

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 409 ARERTNGGRGARVLINFVGVFACYSYYG 326
           A  R+      R+ + F+GVFACY YYG
Sbjct: 5   AGRRSRSPERLRLPVCFLGVFACYFYYG 32

>RL39_PYRKO (Q5JGT6) 50S ribosomal protein L39e|
          Length = 51

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 80  LPLWGIVHVKRKVDRHQPKRNRWKDTR 160
           +P+W IV   RKV  H PKR  W+ T+
Sbjct: 23  VPVWVIVKTNRKVITH-PKRRHWRRTK 48

>LNT_PSESM (Q87VX7) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP|
           N-acyltransferase)
          Length = 506

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = -3

Query: 343 CYSYYGYGAPTTSSYTLLLLFGSENGK-----RVKGVAALPLLECLPVAELGRWLRR 188
           CY +  YGA T+  Y  +  +G  +        +  +AA+ L   LP     RWLRR
Sbjct: 60  CYGFGLYGAGTSWIYVSIHTYGGASALLAGLLMLLFIAAIALFFALPAWVWARWLRR 116

>ATOE_HAEIN (P44051) Short-chain fatty acids transporter|
          Length = 447

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 373 VLINFVGVFACYSYYGYGAPTTSSYTLLLLFGSENGKRVKGVAALPLLECLPVA 212
           VL+ F+G  AC   +G+G    +      +F  E  +R+KG     L+ C  +A
Sbjct: 99  VLVTFMGSIACIINWGFGLVVGA------MFAKEVARRIKGSDYALLIACAYIA 146

>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 169 GNMPTTNASTTGLAQPQAGIPAAVGQP 249
           GN P T+  +TG+A+PQA  P    +P
Sbjct: 215 GNNPFTSGGSTGMARPQAPRPGGAPRP 241

>RBD2_KLULA (Q6CR06) Rhomboid protein 2 (EC 3.4.21.-)|
          Length = 271

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = -3

Query: 307 SSYTLLLLFGSENGKRVKGVAALPLLECLPVAELGRWLRRWSLAYCQKGSRVFPSVSFWL 128
           S+++++++F   +G    GV    +L  L V          ++ YC  GS +FP+V    
Sbjct: 76  STFSMIVMFEESHGTLYTGV----ILNLLAVFT--------AIPYCLIGSLLFPNVEIGG 123

Query: 127 VS-VYFSFHMYYAPKGQR 77
            S  +FSF  Y+A K  R
Sbjct: 124 ASGWFFSFLGYFAVKESR 141

>YXT2_CAEEL (Q18078) Hypothetical protein C18B2.2|
          Length = 356

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 94  HSTCETKSRQTPTKTKQMERHETLFGNMPTTNASTTGLAQPQ 219
           +S   + +   PTK KQM+   +L+ NM    A  + + QP+
Sbjct: 39  YSISNSNTDDAPTKKKQMKAFFSLYHNMDELKAQNSDVVQPR 80

>PINC_HUMAN (P48059) Protein PINCH (Particularly interesting new Cys-His|
           protein) (LIM and senescent cell antigen-like domains 1)
           (NY-REN-48 antigen)
          Length = 324

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
 Frame = -2

Query: 245 CPTAAGMPACG*ARPVVEALVVGILPKRVSCLSIXXXXXXXXXXXVSHVLCPKGAK---A 75
           C    G+P CG  R  +E  VV  + K+                 V H +C K  K    
Sbjct: 183 CHDKMGVPICGACRRPIEGRVVNAMGKQ---------------WHVEHFVCAKCEKPFLG 227

Query: 74  HDS*HTVVHAHCNTHYSNMF 15
           H        A+C THY+ +F
Sbjct: 228 HRHYERKGLAYCETHYNQLF 247

>HCFC1_MESAU (P51611) Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory|
            protein) (VCAF) [Contains: HCF N-terminal chain 1; HCF
            N-terminal chain 2; HCF N-terminal chain 3; HCF
            N-terminal chain 4; HCF N-terminal chain 5; HCF
            N-terminal chain 6; HCF
          Length = 2090

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +1

Query: 97   STCETKSRQTPTKTKQMERHETLFGNMPTTNASTTGLAQPQAGIPAAVGQP 249
            +T    S Q        E HET   +  TT  S  G  QP+ G   A G+P
Sbjct: 1315 TTSNAGSAQRVCSNPPCETHETGTTHTATTATSNGGAGQPEGGQQPAGGRP 1365

>WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein|
            kinase with no lysine 1) (Protein kinase,
            lysine-deficient 1) (Kinase deficient protein)
          Length = 2382

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
 Frame = +1

Query: 121  QTPTKTKQMERHETLFGNMPTTNASTTGLAQPQAGIP----AAVGQPHPLLFSHFPNQKE 288
            Q PT + Q    E+  G      A    +AQPQA  P    ++V   H  + S   +  E
Sbjct: 1025 QAPTTSSQQAVLESTQGVSQVAPAEPVAVAQPQATQPTTLASSVDSAHSDVASGMSDGNE 1084

Query: 289  EAKCRSWW*EHRNRSRSNKQTHRRN*SGHARH 384
                 S     R+  R+ K+ +R++    +RH
Sbjct: 1085 NVPSSS----GRHEGRTTKRHYRKSVRSRSRH 1112

>ZN228_HUMAN (Q9UJU3) Zinc finger protein 228|
          Length = 913

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
 Frame = +1

Query: 79  FAPLGHSTCETKSRQTPTKTKQMERHETLFGNMPTTNASTTGLAQPQAGIPAAVGQPHPL 258
           F+P   S+ +T  + T    +  +  +   G           L Q  AGIP  + +    
Sbjct: 98  FSPKELSSRQTWQQSTGGLIRCQDFLKVFQGKNSQLQEQGNSLGQAWAGIPVQISEDKNY 157

Query: 259 LFSHFPNQKEEAKCR---SWW*EHRNRSRSNKQTH 354
           +F+H  N     K +   SW   H  R    K++H
Sbjct: 158 IFTHIGNGSNYIKSQGYPSWRAHHSWRKMYLKESH 192

>HCFC1_MOUSE (Q61191) Host cell factor (HCF) (HCF-1) (C1 factor) [Contains: HCF|
            N-terminal chain 1; HCF N-terminal chain 2; HCF
            N-terminal chain 3; HCF N-terminal chain 4; HCF
            N-terminal chain 5; HCF N-terminal chain 6; HCF
            C-terminal chain 1; HCF C-termi
          Length = 2045

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = +1

Query: 97   STCETKSRQTPTKTKQMERHETLFGNMPTTNASTTGLAQPQAGIPAAVGQP 249
            +T    S Q        E HET   +  TT  S  G  QP+ G   A G P
Sbjct: 1315 TTSNAGSAQRVCSNPPCETHETGTTHTATTATSNGGAGQPEGGQQPASGHP 1365

>RK2_CHLVU (P56367) Chloroplast 50S ribosomal protein L2|
          Length = 275

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +1

Query: 262 FSHFPNQKEEAKCRSWW*EHRNRSRSNKQTHRRN*SGHAR 381
           FS   ++K E    SWW   + R+     T R    GH R
Sbjct: 21  FSEITHKKPEKALTSWWSRSKGRNNRGIITSRHRGGGHKR 60

>YJO6_SCHPO (Q96WU9) Very hypothetical protein PB16A4.06c in chromosome III|
          Length = 126

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 406 RERTNGGRGARVLINFVGVFACYSYYGYGAPTTSSYTLLLLFGSEN 269
           R R++G +G R L +    F   +YYG G  TT +  L    GS++
Sbjct: 53  RSRSHGPQGRRSLEHDNQFFNSRTYYGNGGNTTDTEALQKSVGSQS 98

>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)|
           (SH3/WW domain anchor protein in the nucleus) (SWAN)
          Length = 932

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 184 TNASTTGLAQPQAGIPAAVGQPHPLL 261
           T+A   G   P AGIP+A G+ H  L
Sbjct: 683 TSAGLPGAGMPSAGIPSAGGEEHAFL 708

>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)|
           (SH3/WW domain anchor protein in the nucleus) (SWAN)
          Length = 932

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 184 TNASTTGLAQPQAGIPAAVGQPHPLL 261
           T+A   G   P AGIP+A G+ H  L
Sbjct: 683 TSAGLPGAGMPSAGIPSAGGEEHAFL 708


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,761,330
Number of Sequences: 219361
Number of extensions: 1397767
Number of successful extensions: 3808
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3806
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)