ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast60g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT017221.1| Zea mays clone EL01N0372H02.c mRNA sequence 266 5e-68
2ref|XM_506898.1| PREDICTED Oryza sativa (japonica cultivar-group... 240 3e-60
3ref|XM_467237.1| Oryza sativa (japonica cultivar-group), mRNA 240 3e-60
4dbj|AK105916.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 3e-60
5dbj|AK101568.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 3e-60
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 113 4e-22
7dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic D... 113 4e-22
8gb|AY104516.1| Zea mays PCO121857 mRNA sequence 60 5e-06
9emb|CR932963.2| Medicago truncatula chromosome 5 clone mth2-115p... 46 0.079
10emb|AL606783.13| Mouse DNA sequence from clone RP23-374O23 on ch... 44 0.31
11gb|AC010276.6|AC010276 Homo sapiens chromosome 5 clone CTC-504A5... 42 1.2
12dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 42 1.2
13ref|NM_126105.2| Arabidopsis thaliana triacylglycerol lipase AT5... 40 4.9
14ref|NM_117892.4| Arabidopsis thaliana metallopeptidase AT4G17830... 40 4.9
15gb|AC151846.3| Mus musculus BAC clone RP23-13B8 from chromosome ... 40 4.9
16gb|AC123075.5| Mus musculus BAC clone RP23-181C16 from chromosom... 40 4.9
17gb|AC124407.4| Mus musculus BAC clone RP24-389C22 from chromosom... 40 4.9
18emb|AL606527.6| Human DNA sequence from clone RP11-454G24 on chr... 40 4.9
19emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chr... 40 4.9
20gb|AY070021.1| Arabidopsis thaliana putative N-acetylornithine d... 40 4.9
21gb|AF360346.1| Arabidopsis thaliana putative N-acetylornithine d... 40 4.9
22gb|AC093431.2| Homo sapiens chromosome 1 clone RP11-574N2, compl... 40 4.9
23dbj|AK080912.1| Mus musculus 4 days neonate male adipose cDNA, R... 40 4.9
24dbj|AK079204.1| Mus musculus adult male urinary bladder cDNA, RI... 40 4.9
25emb|BX826950.1|CNS0A4BZ Arabidopsis thaliana Full-length cDNA Co... 40 4.9
26gb|AC108202.3| Homo sapiens BAC clone RP11-20M7 from 4, complete... 40 4.9
27emb|BX828519.1|CNS0A2DF Arabidopsis thaliana Full-length cDNA Co... 40 4.9
28emb|BX830109.1|CNS0A1CJ Arabidopsis thaliana Full-length cDNA Co... 40 4.9
29gb|AC151828.3| Mus musculus BAC clone RP24-444L19 from chromosom... 40 4.9
30dbj|AB020742.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 4.9
31emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 40 4.9
32gb|AC153955.3| Mus musculus 10 BAC RP24-167A12 (Roswell Park Can... 40 4.9

>gb|BT017221.1| Zea mays clone EL01N0372H02.c mRNA sequence
          Length = 1252

 Score =  266 bits (134), Expect = 5e-68
 Identities = 206/230 (89%)
 Strand = Plus / Minus

                                                                       
Query: 136 tcttccagctgcgaaatgatgcttacaaacacttgaaagccttgggccatatctgaaaac 195
           ||||||||||| ||||||||||| | |||||| |||||||| |||||||| |||||||||
Sbjct: 907 tcttccagctgtgaaatgatgctcagaaacacctgaaagccctgggccatgtctgaaaac 848

                                                                       
Query: 196 agacaatactcgttcttcgcgtggtacgtcttcagtaaaccatatccagctgtttgaaca 255
           ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 847 agacagtactcgttcttcgcatggtacgtcttcagtaagccatatccagctgtttgaaca 788

                                                                       
Query: 256 tcaaatccttcatcctgtaattcccgaatcagaggcaaactcccggtgatggaatatggc 315
           |||||||| || ||||||||| |||| || ||||| | ||||||||||||||||||||||
Sbjct: 787 tcaaatccctcgtcctgtaatccccggattagaggtagactcccggtgatggaatatggc 728

                                                             
Query: 316 tctacgtatccaactatttcctcagttgctttgcacaatgcttgaaagcc 365
           || ||||  |||||||||||||  ||||||||||| ||||| ||| ||||
Sbjct: 727 tccacgtggccaactatttccttggttgctttgcataatgcatgatagcc 678



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>ref|XM_506898.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1148_D05.1
            patrial mRNA
          Length = 1652

 Score =  240 bits (121), Expect = 3e-60
 Identities = 202/229 (88%)
 Strand = Plus / Minus

                                                                        
Query: 137  cttccagctgcgaaatgatgcttacaaacacttgaaagccttgggccatatctgaaaaca 196
            |||||| ||| ||||||||||| | ||| ||||||||||||||||||||||||||||| |
Sbjct: 1398 cttccaactgtgaaatgatgctcagaaatacttgaaagccttgggccatatctgaaaata 1339

                                                                        
Query: 197  gacaatactcgttcttcgcgtggtacgtcttcagtaaaccatatccagctgtttgaacat 256
            |||| ||||||||||| |||||||| ||||| ||||| ||||| ||||| || |||||||
Sbjct: 1338 gacagtactcgttctttgcgtggtatgtcttgagtaagccatacccagcagtctgaacat 1279

                                                                        
Query: 257  caaatccttcatcctgtaattcccgaatcagaggcaaactcccggtgatggaatatggct 316
            |||| ||||||||||||||||||| |||||| |||| |||||| || ||||||||||| |
Sbjct: 1278 caaacccttcatcctgtaattccctaatcaggggcagactcccagtaatggaatatggtt 1219

                                                             
Query: 317  ctacgtatccaactatttcctcagttgctttgcacaatgcttgaaagcc 365
            | ||||  || || |||||||||||||||||||| ||||||||||||||
Sbjct: 1218 ccacgtggccgacaatttcctcagttgctttgcataatgcttgaaagcc 1170



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>ref|XM_467237.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1652

 Score =  240 bits (121), Expect = 3e-60
 Identities = 202/229 (88%)
 Strand = Plus / Minus

                                                                        
Query: 137  cttccagctgcgaaatgatgcttacaaacacttgaaagccttgggccatatctgaaaaca 196
            |||||| ||| ||||||||||| | ||| ||||||||||||||||||||||||||||| |
Sbjct: 1398 cttccaactgtgaaatgatgctcagaaatacttgaaagccttgggccatatctgaaaata 1339

                                                                        
Query: 197  gacaatactcgttcttcgcgtggtacgtcttcagtaaaccatatccagctgtttgaacat 256
            |||| ||||||||||| |||||||| ||||| ||||| ||||| ||||| || |||||||
Sbjct: 1338 gacagtactcgttctttgcgtggtatgtcttgagtaagccatacccagcagtctgaacat 1279

                                                                        
Query: 257  caaatccttcatcctgtaattcccgaatcagaggcaaactcccggtgatggaatatggct 316
            |||| ||||||||||||||||||| |||||| |||| |||||| || ||||||||||| |
Sbjct: 1278 caaacccttcatcctgtaattccctaatcaggggcagactcccagtaatggaatatggtt 1219

                                                             
Query: 317  ctacgtatccaactatttcctcagttgctttgcacaatgcttgaaagcc 365
            | ||||  || || |||||||||||||||||||| ||||||||||||||
Sbjct: 1218 ccacgtggccgacaatttcctcagttgctttgcataatgcttgaaagcc 1170



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>dbj|AK105916.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H10, full
            insert sequence
          Length = 1711

 Score =  240 bits (121), Expect = 3e-60
 Identities = 202/229 (88%)
 Strand = Plus / Minus

                                                                        
Query: 137  cttccagctgcgaaatgatgcttacaaacacttgaaagccttgggccatatctgaaaaca 196
            |||||| ||| ||||||||||| | ||| ||||||||||||||||||||||||||||| |
Sbjct: 1457 cttccaactgtgaaatgatgctcagaaatacttgaaagccttgggccatatctgaaaata 1398

                                                                        
Query: 197  gacaatactcgttcttcgcgtggtacgtcttcagtaaaccatatccagctgtttgaacat 256
            |||| ||||||||||| |||||||| ||||| ||||| ||||| ||||| || |||||||
Sbjct: 1397 gacagtactcgttctttgcgtggtatgtcttgagtaagccatacccagcagtctgaacat 1338

                                                                        
Query: 257  caaatccttcatcctgtaattcccgaatcagaggcaaactcccggtgatggaatatggct 316
            |||| ||||||||||||||||||| |||||| |||| |||||| || ||||||||||| |
Sbjct: 1337 caaacccttcatcctgtaattccctaatcaggggcagactcccagtaatggaatatggtt 1278

                                                             
Query: 317  ctacgtatccaactatttcctcagttgctttgcacaatgcttgaaagcc 365
            | ||||  || || |||||||||||||||||||| ||||||||||||||
Sbjct: 1277 ccacgtggccgacaatttcctcagttgctttgcataatgcttgaaagcc 1229



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>dbj|AK101568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050F24, full
            insert sequence
          Length = 1688

 Score =  240 bits (121), Expect = 3e-60
 Identities = 202/229 (88%)
 Strand = Plus / Minus

                                                                        
Query: 137  cttccagctgcgaaatgatgcttacaaacacttgaaagccttgggccatatctgaaaaca 196
            |||||| ||| ||||||||||| | ||| ||||||||||||||||||||||||||||| |
Sbjct: 1434 cttccaactgtgaaatgatgctcagaaatacttgaaagccttgggccatatctgaaaata 1375

                                                                        
Query: 197  gacaatactcgttcttcgcgtggtacgtcttcagtaaaccatatccagctgtttgaacat 256
            |||| ||||||||||| |||||||| ||||| ||||| ||||| ||||| || |||||||
Sbjct: 1374 gacagtactcgttctttgcgtggtatgtcttgagtaagccatacccagcagtctgaacat 1315

                                                                        
Query: 257  caaatccttcatcctgtaattcccgaatcagaggcaaactcccggtgatggaatatggct 316
            |||| ||||||||||||||||||| |||||| |||| |||||| || ||||||||||| |
Sbjct: 1314 caaacccttcatcctgtaattccctaatcaggggcagactcccagtaatggaatatggtt 1255

                                                             
Query: 317  ctacgtatccaactatttcctcagttgctttgcacaatgcttgaaagcc 365
            | ||||  || || |||||||||||||||||||| ||||||||||||||
Sbjct: 1254 ccacgtggccgacaatttcctcagttgctttgcataatgcttgaaagcc 1206



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  113 bits (57), Expect = 4e-22
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                            
Query: 137      cttccagctgcgaaatgatgcttacaaacacttgaaagccttgggccatatctgaaaaca 196
                |||||| ||| ||||||||||| | ||| ||||||||||||||||||||||||||||| |
Sbjct: 28385142 cttccaactgtgaaatgatgctcagaaatacttgaaagccttgggccatatctgaaaata 28385083

                                                     
Query: 197      gacaatactcgttcttcgcgtggtacgtcttcagtaa 233
                |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 28385082 gacagtactcgttctttgcgtggtatgtcttgagtaa 28385046



 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 85/97 (87%)
 Strand = Plus / Minus

                                                                            
Query: 269      cctgtaattcccgaatcagaggcaaactcccggtgatggaatatggctctacgtatccaa 328
                |||||||||||| |||||| |||| |||||| || ||||||||||| || ||||  || |
Sbjct: 28384682 cctgtaattccctaatcaggggcagactcccagtaatggaatatggttccacgtggccga 28384623

                                                     
Query: 329      ctatttcctcagttgctttgcacaatgcttgaaagcc 365
                | |||||||||||||||||||| ||||||||||||||
Sbjct: 28384622 caatttcctcagttgctttgcataatgcttgaaagcc 28384586



 Score = 46.1 bits (23), Expect = 0.079
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                       
Query: 234      accatatccagctgtttgaacatcaaatccttcatcctg 272
                |||||| ||||| || ||||||||||| |||||||||||
Sbjct: 28384798 accatacccagcagtctgaacatcaaacccttcatcctg 28384760



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>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1148_D05
          Length = 155146

 Score =  113 bits (57), Expect = 4e-22
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                        
Query: 137  cttccagctgcgaaatgatgcttacaaacacttgaaagccttgggccatatctgaaaaca 196
            |||||| ||| ||||||||||| | ||| ||||||||||||||||||||||||||||| |
Sbjct: 9263 cttccaactgtgaaatgatgctcagaaatacttgaaagccttgggccatatctgaaaata 9204

                                                 
Query: 197  gacaatactcgttcttcgcgtggtacgtcttcagtaa 233
            |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 9203 gacagtactcgttctttgcgtggtatgtcttgagtaa 9167



 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 85/97 (87%)
 Strand = Plus / Minus

                                                                        
Query: 269  cctgtaattcccgaatcagaggcaaactcccggtgatggaatatggctctacgtatccaa 328
            |||||||||||| |||||| |||| |||||| || ||||||||||| || ||||  || |
Sbjct: 8803 cctgtaattccctaatcaggggcagactcccagtaatggaatatggttccacgtggccga 8744

                                                 
Query: 329  ctatttcctcagttgctttgcacaatgcttgaaagcc 365
            | |||||||||||||||||||| ||||||||||||||
Sbjct: 8743 caatttcctcagttgctttgcataatgcttgaaagcc 8707



 Score = 46.1 bits (23), Expect = 0.079
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 234  accatatccagctgtttgaacatcaaatccttcatcctg 272
            |||||| ||||| || ||||||||||| |||||||||||
Sbjct: 8919 accatacccagcagtctgaacatcaaacccttcatcctg 8881



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>gb|AY104516.1| Zea mays PCO121857 mRNA sequence
          Length = 939

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 93/112 (83%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                       
Query: 257 caaatccttcatcctgtaattcccgaatcag-aggcaaactcccggtgatggaatatggc 315
           |||||||||| | |||||||||||| || || ||| | ||||||||||||||||||||||
Sbjct: 859 caaatccttcgttctgtaattcccggataaggaggtagactcccggtgatggaatatggc 800

                                                               
Query: 316 t--ctacgtatccaactatttcctcagttgctttgcacaatgcttgaaagcc 365
           |  |   ||  |||||||||||||  ||||||||||| ||||| ||| ||||
Sbjct: 799 tncccnagtggccaactatttccttggttgctttgcataatgcatgatagcc 748



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>emb|CR932963.2| Medicago truncatula chromosome 5 clone mth2-115p22, COMPLETE SEQUENCE
          Length = 133910

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                         
Query: 276   ttcccgaatcagaggcaaactcccggtgatggaatatggctctacgtatccaactatttc 335
             ||||||||| |||||||| ||||| || || ||  | |||| ||| |  ||||| |||||
Sbjct: 37079 ttcccgaatgagaggcaagctcccagtaattgagaaaggctttacatggccaacaatttc 37020

                            
Query: 336   ctcagttgctttgca 350
             |||||||||||||||
Sbjct: 37019 ctcagttgctttgca 37005



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 250   tgaacatcaaatccttcatcctgt 273
             ||||||||||| ||||||||||||
Sbjct: 37181 tgaacatcaaaaccttcatcctgt 37158



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>emb|AL606783.13| Mouse DNA sequence from clone RP23-374O23 on chromosome 13 Contains
             part of the gene for a novel protein similar to axonemal
             dynein heavy polypeptide (DNAH), complete sequence
          Length = 127451

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 177   ttgggccatatctgaaaacaga 198
             ||||||||||||||||||||||
Sbjct: 49442 ttgggccatatctgaaaacaga 49463



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>gb|AC010276.6|AC010276 Homo sapiens chromosome 5 clone CTC-504A5, complete sequence
          Length = 207842

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 252   aacatcaaatccttcatcctg 272
             |||||||||||||||||||||
Sbjct: 54918 aacatcaaatccttcatcctg 54938



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>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 268    tcctgtaattcccgaatcaga 288
              |||||||||||||||||||||
Sbjct: 317268 tcctgtaattcccgaatcaga 317288



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>ref|NM_126105.2| Arabidopsis thaliana triacylglycerol lipase AT5G67050 mRNA, complete
            cds
          Length = 1488

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 246  tgtttgaacatcaaatcctt 265
            ||||||||||||||||||||
Sbjct: 1153 tgtttgaacatcaaatcctt 1134



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>ref|NM_117892.4| Arabidopsis thaliana metallopeptidase AT4G17830 mRNA, complete cds
          Length = 1553

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                        
Query: 247  gtttgaacatcaaatccttcatcctgtaattcccgaatcagaggcaaactcccggtgatg 306
            ||||| |||||||| ||||||||||| |  || || || ||||| ||| | |||||||| 
Sbjct: 1241 gtttgcacatcaaaaccttcatcctggaggtctcggattagaggtaaagtaccggtgatc 1182

                                                        
Query: 307  gaatatggctctacgtatccaactatttcctcagttgctttgca 350
            || || ||||  |||| |||||| | ||| || |||||||||||
Sbjct: 1181 gagtaaggcttcacgtgtccaacaacttcttcggttgctttgca 1138



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>gb|AC151846.3| Mus musculus BAC clone RP23-13B8 from chromosome 10, complete sequence
          Length = 252639

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    ttcagtaaaccatatccagc 245
              ||||||||||||||||||||
Sbjct: 206688 ttcagtaaaccatatccagc 206669



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>gb|AC123075.5| Mus musculus BAC clone RP23-181C16 from chromosome 3, complete sequence
          Length = 198063

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     agctcaaaacactattatta 68
              ||||||||||||||||||||
Sbjct: 124116 agctcaaaacactattatta 124135



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>gb|AC124407.4| Mus musculus BAC clone RP24-389C22 from chromosome 10, complete sequence
          Length = 157929

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    ttcagtaaaccatatccagc 245
              ||||||||||||||||||||
Sbjct: 110446 ttcagtaaaccatatccagc 110465



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>emb|AL606527.6| Human DNA sequence from clone RP11-454G24 on chromosome 1 Contains a
              alcohol dehydrogenase 5 (class III) chi polypeptide (ADH5)
              pseudogene, complete sequence
          Length = 179964

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     aatatgtatctaataaggta 105
              ||||||||||||||||||||
Sbjct: 125257 aatatgtatctaataaggta 125238



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>emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chromosome 9 Contains an
              alpha type 7 proteasome subunit (PSMA7) pseudogene, the 3'
              end of a novel gene, a novel gene and a CpG island,
              complete sequence
          Length = 182653

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     aaaacactattattagatct 73
              ||||||||||||||||||||
Sbjct: 120314 aaaacactattattagatct 120295



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>gb|AY070021.1| Arabidopsis thaliana putative N-acetylornithine deacetylase
            (At4g17830) mRNA, complete cds
          Length = 1354

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                        
Query: 247  gtttgaacatcaaatccttcatcctgtaattcccgaatcagaggcaaactcccggtgatg 306
            ||||| |||||||| ||||||||||| |  || || || ||||| ||| | |||||||| 
Sbjct: 1205 gtttgcacatcaaaaccttcatcctggaggtctcggattagaggtaaagtaccggtgatc 1146

                                                        
Query: 307  gaatatggctctacgtatccaactatttcctcagttgctttgca 350
            || || ||||  |||| |||||| | ||| || |||||||||||
Sbjct: 1145 gagtaaggcttcacgtgtccaacaacttcttcggttgctttgca 1102



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>gb|AF360346.1| Arabidopsis thaliana putative N-acetylornithine deacetylase
            (At4g17830) mRNA, complete cds
          Length = 1537

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                        
Query: 247  gtttgaacatcaaatccttcatcctgtaattcccgaatcagaggcaaactcccggtgatg 306
            ||||| |||||||| ||||||||||| |  || || || ||||| ||| | |||||||| 
Sbjct: 1229 gtttgcacatcaaaaccttcatcctggaggtctcggattagaggtaaagtaccggtgatc 1170

                                                        
Query: 307  gaatatggctctacgtatccaactatttcctcagttgctttgca 350
            || || ||||  |||| |||||| | ||| || |||||||||||
Sbjct: 1169 gagtaaggcttcacgtgtccaacaacttcttcggttgctttgca 1126



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>gb|AC093431.2| Homo sapiens chromosome 1 clone RP11-574N2, complete sequence
          Length = 164454

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    aatatgtatctaataaggta 105
             ||||||||||||||||||||
Sbjct: 54687 aatatgtatctaataaggta 54706



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>dbj|AK080912.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length
            enriched library, clone:B430206K05
            product:unclassifiable, full insert sequence
          Length = 1865

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  ttcagtaaaccatatccagc 245
            ||||||||||||||||||||
Sbjct: 1133 ttcagtaaaccatatccagc 1114



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>dbj|AK079204.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
            enriched library, clone:9530027K12 product:similar to KH
            TYPE SPLICING REGULATORY PROTEIN KSRP (FRAGMENT) [Mus
            musculus], full insert sequence
          Length = 2093

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 49   agctcaaaacactattatta 68
            ||||||||||||||||||||
Sbjct: 1253 agctcaaaacactattatta 1234



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>emb|BX826950.1|CNS0A4BZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB79ZG04 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1503

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                        
Query: 247  gtttgaacatcaaatccttcatcctgtaattcccgaatcagaggcaaactcccggtgatg 306
            ||||| |||||||| ||||||||||| |  || || || ||||| ||| | |||||||| 
Sbjct: 1210 gtttgcacatcaaaaccttcatcctggaggtctcggattagaggtaaagtaccggtgatc 1151

                                                        
Query: 307  gaatatggctctacgtatccaactatttcctcagttgctttgca 350
            || || ||||  |||| |||||| | ||| || |||||||||||
Sbjct: 1150 gagtaaggcttcacgtgtccaacaacttcttcggttgctttgca 1107



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>gb|AC108202.3| Homo sapiens BAC clone RP11-20M7 from 4, complete sequence
          Length = 154274

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   tttgaacatcaaatccttca 267
             ||||||||||||||||||||
Sbjct: 76799 tttgaacatcaaatccttca 76780



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>emb|BX828519.1|CNS0A2DF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL11ZD08 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 1577

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                        
Query: 247  gtttgaacatcaaatccttcatcctgtaattcccgaatcagaggcaaactcccggtgatg 306
            ||||| |||||||| ||||||||||| |  || || || ||||| ||| | |||||||| 
Sbjct: 1290 gtttgcacatcaaaaccttcatcctggaggtctcggattagaggtaaagtaccggtgatc 1231

                                                        
Query: 307  gaatatggctctacgtatccaactatttcctcagttgctttgca 350
            || || ||||  |||| |||||| | ||| || |||||||||||
Sbjct: 1230 gagtaaggcttcacgtgtccaacaacttcttcggttgctttgca 1187



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>emb|BX830109.1|CNS0A1CJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB60ZA06 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1489

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 246  tgtttgaacatcaaatcctt 265
            ||||||||||||||||||||
Sbjct: 1153 tgtttgaacatcaaatcctt 1134



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>gb|AC151828.3| Mus musculus BAC clone RP24-444L19 from chromosome 10, complete sequence
          Length = 222344

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    ttcagtaaaccatatccagc 245
              ||||||||||||||||||||
Sbjct: 201685 ttcagtaaaccatatccagc 201704



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>dbj|AB020742.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21H1
          Length = 74342

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 246  tgtttgaacatcaaatcctt 265
            ||||||||||||||||||||
Sbjct: 1368 tgtttgaacatcaaatcctt 1387



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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 240     tccagctgtttgaacatcaa 259
               ||||||||||||||||||||
Sbjct: 2703482 tccagctgtttgaacatcaa 2703463



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>gb|AC153955.3| Mus musculus 10 BAC RP24-167A12 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 154271

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 269    cctgtaattcccgaatcagaggca 292
              ||||||||||| ||||||||||||
Sbjct: 113617 cctgtaattccagaatcagaggca 113640


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,279,679
Number of Sequences: 3902068
Number of extensions: 3279679
Number of successful extensions: 57907
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57838
Number of HSP's gapped (non-prelim): 68
length of query: 368
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 346
effective length of database: 17,147,199,772
effective search space: 5932931121112
effective search space used: 5932931121112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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