ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast60f08 |
|---|---|
| Clone Library Name | barley_pub |
>SAT5_ARATH (Q42538) Serine acetyltransferase 5 (EC 2.3.1.30) (AtSAT-5) (SAT-c)| (AtSERAT1;1) Length = 312 Score = 60.5 bits (145), Expect = 1e-09 Identities = 28/42 (66%), Positives = 33/42 (78%), Gaps = 5/42 (11%) Frame = -1 Query: 370 TAVGNPARLIGGKK-----GDDMPGESMDHTSFIQQWSDYTI 260 TAVGNPARL+GGK+ ++ PGESMDHTSFI +WSDY I Sbjct: 271 TAVGNPARLVGGKEKPTIHDEECPGESMDHTSFISEWSDYII 312
>SAT3_ARATH (Q39218) Serine acetyltransferase 3, mitochondrial precursor (EC| 2.3.1.30) (AtSAT-3) (SAT-m) (AtSERAT2;2) Length = 376 Score = 52.0 bits (123), Expect = 4e-07 Identities = 25/42 (59%), Positives = 30/42 (71%), Gaps = 4/42 (9%) Frame = -1 Query: 373 STAVGNPARLIGGKKG----DDMPGESMDHTSFIQQWSDYTI 260 +TAVGNPARL+GGK D +PG +MD TS I +WSDY I Sbjct: 335 TTAVGNPARLLGGKDNPKTHDKIPGLTMDQTSHISEWSDYVI 376
>SAT1_ARATH (Q42588) Serine acetyltransferase 1 (EC 2.3.1.30) (AtSAT-1) (SAT-p)| (AtSERAT2;1) Length = 314 Score = 51.2 bits (121), Expect = 6e-07 Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 4/42 (9%) Frame = -1 Query: 373 STAVGNPARLIGGK----KGDDMPGESMDHTSFIQQWSDYTI 260 +TAVGNPARLIGGK K D +P +MD TS++ +WSDY I Sbjct: 273 TTAVGNPARLIGGKENPRKHDKIPCLTMDQTSYLTEWSDYVI 314
>COX3_MAGGR (Q95840) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 269 Score = 31.2 bits (69), Expect = 0.64 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = +2 Query: 197 LGISITGYRGGEWHLARLSVSDGVI*PLLYEGGMVHGLPWHVV 325 L I TG++G E+ ++ ++SDG Y G HGL HV+ Sbjct: 177 LAIVFTGFQGVEYSVSSFTISDGAFGTCFYFGTGFHGL--HVI 217
>K0317_HUMAN (O15033) Protein KIAA0317| Length = 823 Score = 30.8 bits (68), Expect = 0.84 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%) Frame = -2 Query: 327 ATTCQGSPWTIPPSY-SSGQITPSETL------SRARCHSP 226 AT C +PW +PP + +S Q PS + S + CH+P Sbjct: 304 ATNCSSTPWHLPPMHMTSSQRRPSTAVDEEDEDSPSECHTP 344
>K0317_MOUSE (Q8CHG5) Protein KIAA0317| Length = 823 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 7/41 (17%) Frame = -2 Query: 327 ATTCQGSPWTIPPSY-SSGQITPSETL------SRARCHSP 226 A C +PW +PP + SS Q PS + S + CH+P Sbjct: 304 ANNCTSTPWHLPPMHMSSSQRRPSTAIEEDDEDSPSECHTP 344
>BRCA2_FELCA (Q864S8) Breast cancer type 2 susceptibility protein homolog| (Fanconi anemia group D1 protein homolog) Length = 3372 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/29 (41%), Positives = 21/29 (72%) Frame = +3 Query: 207 VLQVTEEESGILLGSVSQMV*SDHCCMKE 293 V ++T+E + +LGS+ ++ SD CC+KE Sbjct: 879 VFKITKERNVPVLGSIKELQDSDLCCVKE 907
>CCDC9_HUMAN (Q9Y3X0) Coiled-coil domain-containing protein 9| Length = 531 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/21 (61%), Positives = 13/21 (61%) Frame = -3 Query: 359 EPREADRREEGRRHARGVHGP 297 E E DRREE RRH R GP Sbjct: 206 EESERDRREESRRHGRNWGGP 226
>APBE_ECOLI (P0AB85) Thiamine biosynthesis lipoprotein apbE precursor| Length = 351 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%) Frame = +2 Query: 236 HLARLSVSDGVI*PLLYEGGMVH-------GLPWHVVALLPADQPRGV 358 HLARL +G+ L+ GG ++ GLPW V P D+ V Sbjct: 194 HLARLMEQEGISRYLVSVGGALNSRGMNGEGLPWRVAIQKPTDKENAV 241
>APBE_ECO57 (P0AB86) Thiamine biosynthesis lipoprotein apbE precursor| Length = 351 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%) Frame = +2 Query: 236 HLARLSVSDGVI*PLLYEGGMVH-------GLPWHVVALLPADQPRGV 358 HLARL +G+ L+ GG ++ GLPW V P D+ V Sbjct: 194 HLARLMEQEGISRYLVSVGGALNSRGMNGEGLPWRVAIQKPTDKENAV 241
>CARB_CLOAB (Q97FT3) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1065 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 4/42 (9%) Frame = +3 Query: 213 QVTEEESGILLGS----VSQMV*SDHCCMKEVWSMDSPGMSS 326 +VT+++ +++GS + Q + D+CC+ VW++ G S Sbjct: 549 EVTDDKKIVVIGSGPIRIGQGIEFDYCCVHGVWAIKEAGYKS 590
>NRP1A_BRARE (Q8QFX6) Neuropilin-1a precursor (znrp1)| Length = 923 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Frame = -2 Query: 369 PRWGTPRG*SAGRRATTCQGSPWTIPPSYSSGQITPSETL--SRARCHS 229 P GTP G C+ T+PP+ + TPS+ +A CHS Sbjct: 564 PDRGTPAGMGLRLELLGCEMEVPTVPPTTPAASTTPSDECDDDQANCHS 612
>COX3_DUGDU (Q8W9N0) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 261 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = +2 Query: 197 LGISITGYRGGEWHLARLSVSDGVI*PLLYEGGMVHGLPWHVV 325 LGI T + E+H A S+SDG+ + HGL HV+ Sbjct: 169 LGIYFTLLQASEYHEASFSISDGIYGSTFFMATGFHGL--HVI 209
>GOX_PENAG (P81156) Glucose oxidase (EC 1.1.3.4) (Glucose oxyhydrase) (GOD)| (Beta-D-glucose:oxygen 1-oxido-reductase) Length = 587 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = -1 Query: 328 GDDMPGESMDHTSFIQQWSDYTI*DTEPSKMPLSS 224 G+ +PG ++ + + QWSDY + + P+ +SS Sbjct: 490 GETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSS 524
>GOX_TALFL (Q92452) Glucose oxidase precursor (EC 1.1.3.4) (Glucose| oxyhydrase) (GOD) (Beta-D-glucose:oxygen 1-oxido-reductase) Length = 605 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = -1 Query: 328 GDDMPGESMDHTSFIQQWSDYTI*DTEPSKMPLSS 224 G+ +PG ++ + + QWSDY + + P+ +SS Sbjct: 508 GETLPGYNLVENATLSQWSDYVLQNFRPNWHAVSS 542
>PACC_ASPFU (Q4WY67) pH-response transcription factor pacC/RIM101| Length = 676 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/46 (30%), Positives = 20/46 (43%) Frame = -2 Query: 336 GRRATTCQGSPWTIPPSYSSGQITPSETLSRARCHSPPL*PVILMP 199 G T P +PPS++ + S ++S HSPP L P Sbjct: 380 GMSYRTTHSPPTQLPPSHAVATTSASTSMSNPATHSPPTGTPALTP 425
>VL1_HPV24 (P50790) Major capsid protein L1| Length = 512 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = -1 Query: 340 GGKKGDDMPGESMD 299 GGK GDD+PGE +D Sbjct: 266 GGKPGDDIPGEQID 279
>RNY1B_CANAL (Q5AKB1) Ribonuclease T2-like 1-B precursor (EC 3.1.27.1) (RNase| T2-like B) Length = 413 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 6/46 (13%) Frame = -1 Query: 268 YTI*DTEPSKMPLSSSVTCNTNAQ------SCPFLSNSELVLV*EY 149 +T+ D P P+ S ++C+ NAQ SC + S + ++L+ ++ Sbjct: 23 FTLSDLPPDSCPIDSPISCSKNAQELENVNSCCYESPAGVILLTQF 68
>PCX3_MOUSE (Q8VI59) Pecanex-like protein 3| Length = 1620 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +3 Query: 279 CCMKEVWSMDSPGMSSPFFPPISLAG 356 CC+ +W +D+ G + P FPP+SL G Sbjct: 457 CCLL-IWLLDALGTAQP-FPPVSLYG 480
>HGS_HUMAN (O14964) Hepatocyte growth factor-regulated tyrosine kinase| substrate (Protein pp110) (Hrs) Length = 777 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/52 (32%), Positives = 22/52 (42%) Frame = -2 Query: 354 PRG*SAGRRATTCQGSPWTIPPSYSSGQITPSETLSRARCHSPPL*PVILMP 199 P G + + A Q P T P+YSS Q TP+ +P P I P Sbjct: 638 PAGATGAQAAPQAQAGP-TASPAYSSYQPTPTAGYQNVASQAPQSLPAISQP 688
>VL1_HPV5B (P26537) Major capsid protein L1| Length = 525 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -1 Query: 340 GGKKGDDMPGESMDHTSFIQQW 275 GGK GDD+PG +D+ ++ Q+ Sbjct: 273 GGKTGDDIPGAQIDNGTYKNQF 294
>CO6_PANTR (P61134) Complement component C6 precursor| Length = 934 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -2 Query: 339 AGRRATTCQGSPWTIPPSYSSGQITPSETLSRARCH 232 AG TCQG+ WT P S+ +TL++ R H Sbjct: 739 AGPSRYTCQGNSWT--PPISNSLTCEKDTLTKLRGH 772
>ISPE_PELLD (Q3B2S6) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 287 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 7/29 (24%) Frame = +2 Query: 278 LLYEGGM------VH-GLPWHVVALLPAD 343 L Y GG+ +H GLPWHVV + PA+ Sbjct: 145 LAYAGGIGDELTDLHAGLPWHVVTVFPAE 173
>SNF1_CANAL (P52497) Carbon catabolite derepressing protein kinase (EC| 2.7.11.1) Length = 620 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +2 Query: 62 YRVNFQFSTFAGVEHGHARYGSPSPHRRQILSD*HQFT 175 Y V+F+FS + HG+A SP HR+Q L + F+ Sbjct: 562 YLVSFKFSGWESA-HGNAGTDSPQSHRQQDLDEVGSFS 598
>COX3_HIPAM (Q9ZZY5) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 261 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +2 Query: 197 LGISITGYRGGEWHLARLSVSDGVI*PLLYEGGMVHGLPWHVV 325 LG+ T + E+H A ++SDGV + HGL HV+ Sbjct: 169 LGVYFTLLQASEYHEASFTISDGVYGSTFFVATGFHGL--HVI 209
>DNAA_STRCH (Q9ZH75) Chromosomal replication initiator protein dnaA| Length = 624 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = -3 Query: 371 HRGGEPREADRREEGRRHARGVHGP 297 H+G E + DR+++G+ +G HGP Sbjct: 233 HQGYEQQRPDRQDQGQGPRQGGHGP 257
>COX3_PODAN (Q02654) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 269 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +2 Query: 197 LGISITGYRGGEWHLARLSVSDGVI*PLLYEGGMVHGLPWHVV 325 L I T ++G E++++ ++SDG Y G HG +HV+ Sbjct: 177 LAIIFTVFQGVEYNVSSFTISDGAFGTCFYFGTGFHG--FHVI 217
>CO6_PONPY (P61135) Complement component C6 precursor| Length = 934 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -2 Query: 339 AGRRATTCQGSPWTIPPSYSSGQITPSETLSRARCHSPP 223 AG TCQG+ WT P S+ +TL + + H P Sbjct: 739 AGPSRYTCQGNSWT--PPISNSLTCEKDTLIKLKGHCQP 775
>VGNM_CPMV (P03599) Genome polyprotein M (RNA2 polyprotein) [Contains:| Movement protein (MP); Large coat protein (LCP) (Coat protein VP37); Small coat protein, N-terminus part (SCP) (Coat protein VP23); Small coat protein, C-terminus part] Length = 1046 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 167 GASLRVSASGEEKVNHTVHGRAQRRQ 90 G SL+ S SG+E NH VH R+ Sbjct: 406 GESLKYSISGKEAENHAVHATVVSRE 431
>COX3_RHISA (O99822) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 257 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +2 Query: 197 LGISITGYRGGEWHLARLSVSDGVI*PLLYEGGMVHGL 310 LG++ T ++G E+ A+ +SDG+ + HGL Sbjct: 167 LGVAFTMFQGFEYFQAQFKISDGIFGSTFFMTTGFHGL 204 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,048,900 Number of Sequences: 219361 Number of extensions: 1229837 Number of successful extensions: 3391 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3290 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3387 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
