ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast60b12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 83.8 bits (42), Expect = 3e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 235 tcagcgccatcgtttccaaccctccatgatcggtccttcttcctctggggtttc 288 ||||||||||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct: 12237 tcagcgccatcatttccaaccctccatgaacgatccttcttcctctggggtttc 12290
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 83.8 bits (42), Expect = 3e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 235 tcagcgccatcgtttccaaccctccatgatcggtccttcttcctctggggtttc 288 ||||||||||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct: 24778541 tcagcgccatcatttccaaccctccatgaacgatccttcttcctctggggtttc 24778594
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 83.8 bits (42), Expect = 3e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 235 tcagcgccatcgtttccaaccctccatgatcggtccttcttcctctggggtttc 288 ||||||||||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct: 63953 tcagcgccatcatttccaaccctccatgaacgatccttcttcctctggggtttc 64006
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 83.8 bits (42), Expect = 3e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 239 cgccatcgtttccaaccctccatgatcggtccttcttcctctggggtttccggtggtgct 298 |||||||||| || ||||||||||| |||||||||||||||||||| ||| ||| |||| Sbjct: 26368403 cgccatcgttgccgaccctccatgaccggtccttcttcctctggggcttcttgtgctgct 26368462 Query: 299 tgtgggatttttctttcttcatcttc 324 |||||||| ||||||||| ||||| Sbjct: 26368463 tgtgggatgcctctttcttcttcttc 26368488
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 83.8 bits (42), Expect = 3e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 235 tcagcgccatcgtttccaaccctccatgatcggtccttcttcctctggggtttc 288 ||||||||||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct: 24868325 tcagcgccatcatttccaaccctccatgaacgatccttcttcctctggggtttc 24868378
>dbj|AK103649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135D01, full insert sequence Length = 1907 Score = 83.8 bits (42), Expect = 3e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 235 tcagcgccatcgtttccaaccctccatgatcggtccttcttcctctggggtttc 288 ||||||||||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct: 1661 tcagcgccatcatttccaaccctccatgaacgatccttcttcctctggggtttc 1608
>dbj|AK103368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126P14, full insert sequence Length = 1787 Score = 83.8 bits (42), Expect = 3e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 239 cgccatcgtttccaaccctccatgatcggtccttcttcctctggggtttccggtggtgct 298 |||||||||| || ||||||||||| |||||||||||||||||||| ||| ||| |||| Sbjct: 1287 cgccatcgttgccgaccctccatgaccggtccttcttcctctggggcttcttgtgctgct 1228 Query: 299 tgtgggatttttctttcttcatcttc 324 |||||||| ||||||||| ||||| Sbjct: 1227 tgtgggatgcctctttcttcttcttc 1202
>dbj|AK101466.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040I12, full insert sequence Length = 2243 Score = 83.8 bits (42), Expect = 3e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 239 cgccatcgtttccaaccctccatgatcggtccttcttcctctggggtttccggtggtgct 298 |||||||||| || ||||||||||| |||||||||||||||||||| ||| ||| |||| Sbjct: 1794 cgccatcgttgccgaccctccatgaccggtccttcttcctctggggcttcttgtgctgct 1735 Query: 299 tgtgggatttttctttcttcatcttc 324 |||||||| ||||||||| ||||| Sbjct: 1734 tgtgggatgcctctttcttcttcttc 1709
>dbj|AK060811.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-H01, full insert sequence Length = 1583 Score = 83.8 bits (42), Expect = 3e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 239 cgccatcgtttccaaccctccatgatcggtccttcttcctctggggtttccggtggtgct 298 |||||||||| || ||||||||||| |||||||||||||||||||| ||| ||| |||| Sbjct: 1134 cgccatcgttgccgaccctccatgaccggtccttcttcctctggggcttcttgtgctgct 1075 Query: 299 tgtgggatttttctttcttcatcttc 324 |||||||| ||||||||| ||||| Sbjct: 1074 tgtgggatgcctctttcttcttcttc 1049
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 83.8 bits (42), Expect = 3e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 239 cgccatcgtttccaaccctccatgatcggtccttcttcctctggggtttccggtggtgct 298 |||||||||| || ||||||||||| |||||||||||||||||||| ||| ||| |||| Sbjct: 26296572 cgccatcgttgccgaccctccatgaccggtccttcttcctctggggcttcttgtgctgct 26296631 Query: 299 tgtgggatttttctttcttcatcttc 324 |||||||| ||||||||| ||||| Sbjct: 26296632 tgtgggatgcctctttcttcttcttc 26296657
>emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb0016A10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133978 Score = 83.8 bits (42), Expect = 3e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 239 cgccatcgtttccaaccctccatgatcggtccttcttcctctggggtttccggtggtgct 298 |||||||||| || ||||||||||| |||||||||||||||||||| ||| ||| |||| Sbjct: 132387 cgccatcgttgccgaccctccatgaccggtccttcttcctctggggcttcttgtgctgct 132446 Query: 299 tgtgggatttttctttcttcatcttc 324 |||||||| ||||||||| ||||| Sbjct: 132447 tgtgggatgcctctttcttcttcttc 132472
>emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb0101I10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131689 Score = 83.8 bits (42), Expect = 3e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 239 cgccatcgtttccaaccctccatgatcggtccttcttcctctggggtttccggtggtgct 298 |||||||||| || ||||||||||| |||||||||||||||||||| ||| ||| |||| Sbjct: 82676 cgccatcgttgccgaccctccatgaccggtccttcttcctctggggcttcttgtgctgct 82735 Query: 299 tgtgggatttttctttcttcatcttc 324 |||||||| ||||||||| ||||| Sbjct: 82736 tgtgggatgcctctttcttcttcttc 82761
>dbj|AK064308.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B10, full insert sequence Length = 1485 Score = 75.8 bits (38), Expect = 8e-11 Identities = 50/54 (92%) Strand = Plus / Minus Query: 235 tcagcgccatcgtttccaaccctccatgatcggtccttcttcctctggggtttc 288 ||||||||||| |||||||||||||||| || ||||||||||||||||||||| Sbjct: 1175 tcagcgccatcaattccaaccctccatgaacgatccttcttcctctggggtttc 1122
>gb|BT017248.1| Zea mays clone EL01N0307C07.c mRNA sequence Length = 950 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 241 ccatcgtttccaaccctccatgatcggtccttcttcctctggggtttccggtggtgcttg 300 ||||| || ||||||||||| || || |||||||||| |||||| ||| |||||||||| Sbjct: 476 ccatcattgccaaccctccaggaccgatccttcttccgctggggcttcttgtggtgcttg 417 Query: 301 tggga 305 ||||| Sbjct: 416 tggga 412
>gb|AY109495.1| Zea mays CL1497_1 mRNA sequence Length = 1712 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 241 ccatcgtttccaaccctccatgatcggtccttcttcctctggggtttccggtggtgcttg 300 ||||| || ||||||||||| || || |||||||||| |||||| ||| |||||||||| Sbjct: 459 ccatcattgccaaccctccaggaccgatccttcttccgctggggcttcttgtggtgcttg 518 Query: 301 tggga 305 ||||| Sbjct: 519 tggga 523
>gb|AF124737.1|AF124737 Zea mays clone CDAPG77 unknown mRNA Length = 1694 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 241 ccatcgtttccaaccctccatgatcggtccttcttcctctggggtttccggtggtgcttg 300 ||||| || ||||||||||| || || |||||||||| |||||| ||| |||||||||| Sbjct: 1254 ccatcattgccaaccctccaggaccgatccttcttccgctggggcttcttgtggtgcttg 1195 Query: 301 tggga 305 ||||| Sbjct: 1194 tggga 1190
>ref|XM_458593.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0D03608g) partial mRNA Length = 3771 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Minus Query: 304 gatttttctttcttcatcttcttt 327 |||||||||||||||||||||||| Sbjct: 3036 gatttttctttcttcatcttcttt 3013
>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces hansenii Length = 1602771 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 304 gatttttctttcttcatcttcttt 327 |||||||||||||||||||||||| Sbjct: 244387 gatttttctttcttcatcttcttt 244410
>ref|NM_121832.3| Arabidopsis thaliana ANAC087; transcription factor AT5G18270 (ANAC087) transcript variant AT5G18270.1 mRNA, complete cds Length = 1525 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 305 atttttctttcttcatcttctt 326 |||||||||||||||||||||| Sbjct: 61 atttttctttcttcatcttctt 82
>ref|NM_203071.1| Arabidopsis thaliana ANAC087 AT5G18270 (ANAC087) transcript variant AT5G18270.2 mRNA, complete cds Length = 1525 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 305 atttttctttcttcatcttctt 326 |||||||||||||||||||||| Sbjct: 61 atttttctttcttcatcttctt 82
>gb|AC144711.2| Danio rerio clone CH211-218M15, complete sequence Length = 208866 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Plus Query: 133 cacacaagcaagcaaaaactgaagca 158 ||||||||||| |||||||||||||| Sbjct: 56154 cacacaagcaatcaaaaactgaagca 56179
>gb|AC136953.17| Medicago truncatula clone mth2-20h6, complete sequence Length = 94019 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 306 tttttctttcttcatcttcttt 327 |||||||||||||||||||||| Sbjct: 11579 tttttctttcttcatcttcttt 11600 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 tttttctttcttcatcttctt 326 ||||||||||||||||||||| Sbjct: 62316 tttttctttcttcatcttctt 62336
>gb|AC150446.8| Medicago truncatula clone mth2-101n14, complete sequence Length = 109162 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 306 tttttctttcttcatcttcttt 327 |||||||||||||||||||||| Sbjct: 3644 tttttctttcttcatcttcttt 3623
>gb|AC079950.23| Homo sapiens 12q BAC RP11-575A21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 135123 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 312 tttcttcatcttctttggggaa 333 |||||||||||||||||||||| Sbjct: 87691 tttcttcatcttctttggggaa 87712
>gb|AC009709.7|AC009709 Homo sapiens chromosome 18, clone RP11-319O9, complete sequence Length = 187615 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 305 atttttctttcttcatcttctt 326 |||||||||||||||||||||| Sbjct: 128755 atttttctttcttcatcttctt 128734
>gb|AC095041.3| Homo sapiens BAC clone RP11-84H6 from 4, complete sequence Length = 176008 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Minus Query: 301 tgggatttttctttcttcatcttctt 326 |||||||||||||||||| ||||||| Sbjct: 154800 tgggatttttctttcttcttcttctt 154775
>emb|BX832112.1|CNS0A15G Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH52ZE09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1417 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 305 atttttctttcttcatcttctt 326 |||||||||||||||||||||| Sbjct: 35 atttttctttcttcatcttctt 56
>gb|AC108205.5| Homo sapiens BAC clone RP11-140N6 from 4, complete sequence Length = 132623 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Minus Query: 301 tgggatttttctttcttcatcttctt 326 |||||||||||||||||| ||||||| Sbjct: 105015 tgggatttttctttcttcttcttctt 104990
>gb|BT005713.1| Arabidopsis thaliana clone RAFL14-80-C22 (R20123) putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds Length = 1540 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 305 atttttctttcttcatcttctt 326 |||||||||||||||||||||| Sbjct: 61 atttttctttcttcatcttctt 82
>dbj|AB012246.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRG7 Length = 83948 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 305 atttttctttcttcatcttctt 326 |||||||||||||||||||||| Sbjct: 66384 atttttctttcttcatcttctt 66363
>gb|AC007911.8|AC007911 Homo sapiens chromosome 18, clone RP11-520K18, complete sequence Length = 160299 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 305 atttttctttcttcatcttctt 326 |||||||||||||||||||||| Sbjct: 122863 atttttctttcttcatcttctt 122842
>emb|CR848705.13| Zebrafish DNA sequence from clone DKEY-8O15 in linkage group 11, complete sequence Length = 261584 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Plus Query: 133 cacacaagcaagcaaaaactgaagca 158 ||||||||||| |||||||||||||| Sbjct: 109126 cacacaagcaatcaaaaactgaagca 109151
>gb|AC005962.1|AC005962 Homo sapiens chromosome 17, clone hRPK.506_H_21, complete sequence Length = 162083 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 306 tttttctttcttcatcttcttt 327 |||||||||||||||||||||| Sbjct: 82065 tttttctttcttcatcttcttt 82044
>emb|CT009620.9| Zebrafish DNA sequence from clone CH73-187F10 in linkage group 6, complete sequence Length = 95528 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 tttttctttcttcatcttctt 326 ||||||||||||||||||||| Sbjct: 65487 tttttctttcttcatcttctt 65467
>emb|CR962137.2| Medicago truncatula chromosome 5 clone mte1-10p15, COMPLETE SEQUENCE Length = 111128 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 tttttctttcttcatcttctt 326 ||||||||||||||||||||| Sbjct: 97374 tttttctttcttcatcttctt 97394
>gb|AC152068.17| Medicago truncatula clone mth2-29p8, complete sequence Length = 118589 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 tttttctttcttcatcttctt 326 ||||||||||||||||||||| Sbjct: 91664 tttttctttcttcatcttctt 91644
>emb|AL049589.15|HSJ570L12 Human DNA sequence from clone RP4-570L12 on chromosome Xq13.1-21.1 Contains the PGK1 gene for phosphoglycerate kinase 1, the TAF9L gene for TAF9-like RNA polymerase II TATA box binding protein (TBP)-associated factor 31kDa, a novel pseudogene and a CpG island, complete sequence Length = 143508 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 307 ttttctttcttcatcttcttt 327 ||||||||||||||||||||| Sbjct: 18508 ttttctttcttcatcttcttt 18528
>gb|AC136505.41| Medicago truncatula clone mth2-24f15, complete sequence Length = 122801 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 tttctttcttcatcttctttg 328 ||||||||||||||||||||| Sbjct: 84949 tttctttcttcatcttctttg 84929
>gb|AC113303.16| Mus musculus chromosome 5, clone RP23-431E5, complete sequence Length = 221109 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 302 gggatttttctttcttcatcttctt 326 ||||||||||||||||| ||||||| Sbjct: 61614 gggatttttctttcttcttcttctt 61638
>gb|AC024154.2|AC024154 Homo sapiens chromosome 3 clone RP11-487J12 map 3p, complete sequence Length = 204797 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 tttttctttcttcatcttctt 326 ||||||||||||||||||||| Sbjct: 10485 tttttctttcttcatcttctt 10465
>gb|AC026179.5|AC026179 Homo sapiens chromosome 3 clone RP11-264H3 map 3p, complete sequence Length = 166488 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 tttttctttcttcatcttctt 326 ||||||||||||||||||||| Sbjct: 100564 tttttctttcttcatcttctt 100584
>gb|AC066584.6|AC066584 Homo sapiens chromosome 3 clone RP11-244G3 map 3p, complete sequence Length = 155825 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 tttttctttcttcatcttctt 326 ||||||||||||||||||||| Sbjct: 24723 tttttctttcttcatcttctt 24743
>gb|U22665.1|BNU22665 Brassica napus AGL15 gene, complete cds Length = 2679 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 307 ttttctttcttcatcttcttt 327 ||||||||||||||||||||| Sbjct: 946 ttttctttcttcatcttcttt 966
>gb|AC069277.6| Homo sapiens chromosome 3 clone RP11-529B17 map 3p, complete sequence Length = 159908 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 tttttctttcttcatcttctt 326 ||||||||||||||||||||| Sbjct: 148625 tttttctttcttcatcttctt 148645
>gb|AC023485.6| Homo sapiens chromosome 3 clone RP11-489D19 map 3p, complete sequence Length = 179304 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 tttttctttcttcatcttctt 326 ||||||||||||||||||||| Sbjct: 48196 tttttctttcttcatcttctt 48216
>gb|AC107710.5| Mus musculus chromosome 19, clone RP23-269K10, complete sequence Length = 188708 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tttctttcttcatcttcttt 327 |||||||||||||||||||| Sbjct: 63522 tttctttcttcatcttcttt 63503
>ref|NM_004728.2| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 (DDX21), mRNA Length = 4153 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 500 ttttctttcttcatcttctt 481
>ref|NM_116639.1| Arabidopsis thaliana cysteine-type peptidase AT4G04010 mRNA, complete cds Length = 2511 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 1176 ttttctttcttcatcttctt 1157
>gb|AC131909.8| Mus musculus chromosome 5, clone RP24-250G11, complete sequence Length = 145479 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 ggatttttctttcttcatcttctt 326 ||||||||||||||| |||||||| Sbjct: 128079 ggatttttctttcttaatcttctt 128102
>ref|XM_507825.1| PREDICTED: Pan troglodytes similar to Gu protein (LOC450500), mRNA Length = 2547 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 659 ttttctttcttcatcttctt 640
>ref|NM_001025397.1| Canis familiaris serine peptidase inhibitor, Kazal type 5 (SPINK5), mRNA Length = 3438 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tttctttcttcatcttcttt 327 |||||||||||||||||||| Sbjct: 2047 tttctttcttcatcttcttt 2028
>gb|AC005213.1| Homo sapiens chromosome 5, BAC clone 84E9 (LBNL H120), complete sequence Length = 102431 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gatttttctttcttcatctt 323 |||||||||||||||||||| Sbjct: 8639 gatttttctttcttcatctt 8620
>gb|AC114613.12| Mus musculus chromosome 5, clone RP24-80F7, complete sequence Length = 190200 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 ggatttttctttcttcatcttctt 326 ||||||||||||||| |||||||| Sbjct: 80756 ggatttttctttcttaatcttctt 80779
>gb|BC008071.2| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, mRNA (cDNA clone MGC:2857 IMAGE:2987980), complete cds Length = 3301 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 451 ttttctttcttcatcttctt 432
>gb|AC147721.6| Mus musculus chromosome 10, clone RP24-250J7, complete sequence Length = 70656 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gatttttctttcttcatctt 323 |||||||||||||||||||| Sbjct: 7502 gatttttctttcttcatctt 7521
>ref|XM_605010.2| PREDICTED: Bos taurus similar to Serine protease inhibitor Kazal-type 5 precursor (Lympho-epithelial Kazal-type related inhibitor) (LEKTI) (LOC526637), mRNA Length = 1251 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tttctttcttcatcttcttt 327 |||||||||||||||||||| Sbjct: 188 tttctttcttcatcttcttt 169
>gb|AC124459.5| Mus musculus BAC clone RP24-140E5 from chromosome 19, complete sequence Length = 170323 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 tttctttcttcatcttcttt 327 |||||||||||||||||||| Sbjct: 40706 tttctttcttcatcttcttt 40725
>gb|AC147624.2| Mus musculus BAC clone RP24-329I13 from chromosome 18, complete sequence Length = 176258 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 acaagcaagcaaaaactgaa 155 |||||||||||||||||||| Sbjct: 33809 acaagcaagcaaaaactgaa 33790
>gb|AC130718.3| Mus musculus BAC clone RP23-467A8 from chromosome 18, complete sequence Length = 178023 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 acaagcaagcaaaaactgaa 155 |||||||||||||||||||| Sbjct: 175683 acaagcaagcaaaaactgaa 175664
>gb|AC131684.4| Mus musculus BAC clone RP23-371K6 from chromosome 10, complete sequence Length = 190874 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 acacaagcaagcaaaaactg 153 |||||||||||||||||||| Sbjct: 182432 acacaagcaagcaaaaactg 182451
>gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosome 10, complete sequence Length = 162676 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gatttttctttcttcatctt 323 |||||||||||||||||||| Sbjct: 120328 gatttttctttcttcatctt 120347
>ref|XM_846653.1| PREDICTED: Canis familiaris similar to Nucleolar RNA helicase II (Nucleolar RNA helicase Gu) (RH II/Gu) (DEAD-box protein 21) (LOC476891), mRNA Length = 2947 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 413 ttttctttcttcatcttctt 394
>gb|AC148291.22| Medicago truncatula clone mth2-14n3, complete sequence Length = 138853 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 57527 ttttctttcttcatcttctt 57546
>emb|AJ972676.1| Canis familiaris mRNA for serine protease inhibitor Kazal-type 5 precursor (spink5 gene) Length = 3438 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tttctttcttcatcttcttt 327 |||||||||||||||||||| Sbjct: 2047 tttctttcttcatcttcttt 2028
>emb|AL359844.15| Human DNA sequence from clone RP11-314J18 on chromosome 10 Contains the gene for a novel protein (FLJ25162), the GU2 gene for nucleolar protein GU2 (GUB, MGC3199, RH-II/GuB), the DDX21 gene for DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 21 (GUA, GURDB, RH-II/GU, RH-II/GuA), the gene for a novel protein (DKFZP586B0923)(KIAA1279), an endothelial-derived gene 1 (EG1)(EG-1, DKFZP434N185) pseudogene, an actin, beta (ACTB) pseudogene and three CpG islands, complete sequence Length = 171364 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 101690 ttttctttcttcatcttctt 101671
>emb|AL157836.11| Human DNA sequence from clone RP11-477D14 on chromosome 10, complete sequence Length = 175382 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tttctttcttcatcttcttt 327 |||||||||||||||||||| Sbjct: 133780 tttctttcttcatcttcttt 133761
>emb|AL161499.2|ATCHRIV11 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 11 Length = 198022 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 42987 ttttctttcttcatcttctt 43006
>emb|AL034583.1|SPAC637 S.pombe chromosome I cosmid c637 Length = 35905 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 tacaacgctagtgctactgg 184 |||||||||||||||||||| Sbjct: 28138 tacaacgctagtgctactgg 28119
>gb|AC010297.5| Homo sapiens chromosome 5 clone CTB-162J7, complete sequence Length = 157580 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 aacatagagaaatgtttttggaat 43 |||||||||||| ||||||||||| Sbjct: 73914 aacatagagaaaggtttttggaat 73891
>emb|CR749598.1| Homo sapiens mRNA; cDNA DKFZp686F21172 (from clone DKFZp686F21172) Length = 3481 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 633 ttttctttcttcatcttctt 614
>gb|AF481104.1| Mentha longifolia clone 17-1 NBS-LRR-like protein gene, partial cds Length = 493 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 attttccatccaaacatcat 84 |||||||||||||||||||| Sbjct: 228 attttccatccaaacatcat 209
>gb|L80214.1|HUM69DC4Z Homo sapiens (subclone 1_d1 from P1 H69) DNA sequence Length = 3060 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gatttttctttcttcatctt 323 |||||||||||||||||||| Sbjct: 645 gatttttctttcttcatctt 626
>gb|AC154603.3| Mus musculus BAC clone RP23-344D21 from chromosome 13, complete sequence Length = 216297 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 ggatttttctttcttcatcttctt 326 |||||||||||||||| ||||||| Sbjct: 116422 ggatttttctttcttcttcttctt 116445
>ref|NM_001020059.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC637.13c), partial mRNA Length = 1497 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 tacaacgctagtgctactgg 184 |||||||||||||||||||| Sbjct: 1456 tacaacgctagtgctactgg 1475
>dbj|AK038023.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130072F03 product:unclassifiable, full insert sequence Length = 2046 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 303 ggatttttctttcttcatcttctt 326 ||||||||||||||| |||||||| Sbjct: 927 ggatttttctttcttaatcttctt 904
>gb|AC017087.5|AC017087 Homo sapiens BAC clone RP11-495H13 from 4, complete sequence Length = 171745 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 306 tttttctttcttcatcttctttgg 329 |||||||||||||||||| ||||| Sbjct: 36967 tttttctttcttcatcttttttgg 36990
>gb|AC138956.3| Homo sapiens chromosome 5 clone RP11-843P14, complete sequence Length = 175357 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 aacatagagaaatgtttttggaat 43 |||||||||||| ||||||||||| Sbjct: 15104 aacatagagaaaggtttttggaat 15127
>gb|AF261904.1|H009497S03 Homo sapiens RNA helicase II/Gu protein gene, exon 2 Length = 1053 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 784 ttttctttcttcatcttctt 765
>gb|AC021058.16|AC021058 Homo sapiens 12 BAC RP11-373H1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168134 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 tttttctttcttcatcttct 325 |||||||||||||||||||| Sbjct: 96375 tttttctttcttcatcttct 96356
>gb|AC079865.14| Homo sapiens 12 BAC RP11-745I6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163494 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 ggatttttctttcttcatcttctt 326 |||||||| ||||||||||||||| Sbjct: 34886 ggatttttttttcttcatcttctt 34909
>emb|BX648405.1|HSM808553 Homo sapiens mRNA; cDNA DKFZp686A04240 (from clone DKFZp686A04240) Length = 4614 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 399 ttttctttcttcatcttctt 380
>gb|AC093478.9| Mus musculus chromosome 10, clone RP23-58C12, complete sequence Length = 242324 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 132643 ttttctttcttcatcttctt 132662
>gb|AC002365.1|AC002365 Homo sapiens chromosome X clone U177G4, U152H5, U168D5, 174A6, U172D6, and U186B3 from Xp22, complete sequence Length = 196542 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 tgtgggatttttctttcttc 318 |||||||||||||||||||| Sbjct: 164950 tgtgggatttttctttcttc 164969
>gb|AF075598.1|T24H24 Arabidopsis thaliana BAC T24H24 Length = 88848 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 74448 ttttctttcttcatcttctt 74429
>gb|BC004182.2| Homo sapiens cDNA clone IMAGE:2961423, containing frame-shift errors Length = 3292 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 444 ttttctttcttcatcttctt 425
>gb|BC017228.2| Homo sapiens cDNA clone IMAGE:4122673, containing frame-shift errors Length = 3292 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 444 ttttctttcttcatcttctt 425
>gb|BC009432.1| Homo sapiens cDNA clone IMAGE:3355439, containing frame-shift errors Length = 3313 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 466 ttttctttcttcatcttctt 447
>gb|L81904.1|HSL81904 Homo sapiens (subclone 1_h7 from P1 H69) DNA sequence, complete sequence Length = 2976 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gatttttctttcttcatctt 323 |||||||||||||||||||| Sbjct: 960 gatttttctttcttcatctt 979
>gb|AC001215.1|HSAC001215 Homo sapiens (subclone 1_d1 from P1 H69) DNA sequence, complete sequence Length = 3060 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gatttttctttcttcatctt 323 |||||||||||||||||||| Sbjct: 645 gatttttctttcttcatctt 626
>gb|U41387.1|HSU41387 Human Gu protein mRNA, partial cds Length = 3288 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ttttctttcttcatcttctt 326 |||||||||||||||||||| Sbjct: 464 ttttctttcttcatcttctt 445
>emb|AJ242660.1|SAL242660 Sinapis alba partial ycf3 and psaA genes Length = 3233 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 ttttctttcttcatcttctttggg 330 |||||||||||| ||||||||||| Sbjct: 902 ttttctttcttcttcttctttggg 925
>gb|AC116729.14| Mus musculus chromosome 3, clone RP23-346I1, complete sequence Length = 224088 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 ttttctttcttcatcttctttggg 330 |||| ||||||||||||||||||| Sbjct: 186529 ttttatttcttcatcttctttggg 186506
>emb|AL645567.7| Mouse DNA sequence from clone RP23-181A7 on chromosome X, complete sequence Length = 111339 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 tttctttcttcatcttcttt 327 |||||||||||||||||||| Sbjct: 26448 tttctttcttcatcttcttt 26467 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,349,538 Number of Sequences: 3902068 Number of extensions: 4349538 Number of successful extensions: 99717 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99471 Number of HSP's gapped (non-prelim): 246 length of query: 334 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 312 effective length of database: 17,147,199,772 effective search space: 5349926328864 effective search space used: 5349926328864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
