ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast60b10 |
|---|---|
| Clone Library Name | barley_pub |
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/55 (29%), Positives = 23/55 (41%) Frame = +1 Query: 208 GKVRPARRRHELPVGDRSFGLHAHRAGEVGDHPHGHPARAPLALEEPRRGEDEVP 372 G+ R R + RS + A AG+ D G A +P E P++G P Sbjct: 2089 GRARSTRSGMDRAAHQRSLEMAARAAGQAADKEAGPAAASPQESESPQKGSGSSP 2143
>Y1615_PYRFU (Q8U0H4) UPF0027 protein PF1615 [Contains: Pfu hyp2 intein (EC| 3.1.-.-)] Length = 970 Score = 29.3 bits (64), Expect = 2.3 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = +1 Query: 154 DSEGDGDAQEIHEVSYELGKVRPARRRHELPVGDRSFGLHAHRAGEVGDHPHGHPA 321 D EGD + +++V++ +GKV HE V + + HR G P GH A Sbjct: 803 DPEGDLGMEIVYDVAHNIGKV----EEHE--VDGKKVKVIVHRKGATRAFPPGHEA 852
>TYDP1_DROME (Q9VQM4) Probable tyrosyl-DNA phosphodiesterase (EC 3.1.4.-)| (Tyr-DNA phosphodiesterase) (Protein glaikit) Length = 580 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +1 Query: 277 HRAGEVGDHPHGHPARAPLALEEPRRGEDEVPLV 378 HR G V HP GH A L + +D +P+V Sbjct: 349 HREGSVRGHPWGHARLASLLAKHAAPIDDRIPVV 382
>Y1602_PYRHO (O59245) UPF0027 protein PH1602 [Contains: Pho hyp2 intein (EC| 3.1.-.-)] Length = 871 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/60 (30%), Positives = 27/60 (45%) Frame = +1 Query: 142 IASSDSEGDGDAQEIHEVSYELGKVRPARRRHELPVGDRSFGLHAHRAGEVGDHPHGHPA 321 + D EGD +++V++ +GKV HE V + + HR G P GH A Sbjct: 700 VFKQDPEGDLGMDIVYDVAHNIGKV----EEHE--VDGKRVKVIVHRKGATRAFPPGHEA 753
>LRRC7_RAT (P70587) Leucine-rich repeat-containing protein 7 (LAP1 protein)| (Densin-180) Length = 1495 Score = 28.1 bits (61), Expect = 5.2 Identities = 22/59 (37%), Positives = 26/59 (44%) Frame = +1 Query: 196 SYELGKVRPARRRHELPVGDRSFGLHAHRAGEVGDHPHGHPARAPLALEEPRRGEDEVP 372 S E+ R HELP GDR +G A+R G G P L+ R EDE P Sbjct: 1127 STEMAMFRRVSEPHELPPGDR-YGRAAYRGGLEGQ--SSVSMTDPQFLKRNGRYEDEHP 1182
>Y2617_LISIN (Q928B9) UPF0042 protein lin2617| Length = 291 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -1 Query: 222 WPDLAEFIAHLVDLLGITVPF 160 WP+ F+ LVDLL T+PF Sbjct: 219 WPETMAFLDKLVDLLMFTLPF 239
>Y2474_LISMO (Q8Y4G9) UPF0042 protein lmo2474| Length = 291 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -1 Query: 222 WPDLAEFIAHLVDLLGITVPF 160 WP+ F+ LVDLL T+PF Sbjct: 219 WPETQTFLDKLVDLLMFTLPF 239
>Y2447_LISMF (Q71WV3) UPF0042 protein LMOf2365_2447| Length = 291 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -1 Query: 222 WPDLAEFIAHLVDLLGITVPF 160 WP+ F+ LVDLL T+PF Sbjct: 219 WPETQTFLDKLVDLLMFTLPF 239
>TBX1_MOUSE (P70323) T-box transcription factor TBX1 (T-box protein 1)| (Testis-specific T-box protein) Length = 479 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 10/69 (14%) Frame = +1 Query: 160 EGDGDAQEIHEVSYEL----------GKVRPARRRHELPVGDRSFGLHAHRAGEVGDHPH 309 E G ++ +H Y+ K RPA + LP G R G H H H H Sbjct: 388 EAPGASEPLHHHPYKYPAAAYDHYLGAKSRPAP--YPLP-GLRGHGYHPHAHPHAHPHHH 444 Query: 310 GHPARAPLA 336 HPA P A Sbjct: 445 HHPAVNPAA 453
>MUTS_CHLCV (Q821V6) DNA mismatch repair protein mutS| Length = 826 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 12/78 (15%) Frame = +2 Query: 5 TSDSC*LTGTIWPFAPLITARGQYL-NSAECDSAQCTQVITDGGEDA-----------LH 148 TSDS +TG + P A + RG ++ N + SA+ ++ G A L Sbjct: 580 TSDSLSITGGMHPVAQTLLDRGTFIPNDIKMHSARTRMILITGPNMAGKSTYIRQIALLI 639 Query: 149 LQIQKGTVMPKRSTR*AM 202 + Q G+ +P RS M Sbjct: 640 IMAQMGSFIPARSAHIGM 657
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +1 Query: 268 LHAHRAGEVGDHPHGHPARAPLA 336 LH R GE G HG PA PL+ Sbjct: 1338 LHGKRRGEGGGSRHGSPASTPLS 1360
>RSPO2_MOUSE (Q8BFU0) R-spondin-2 precursor (Roof plate-specific spondin-2)| (Cysteine-rich and single thrombospondin domain-containing protein 2) (Cristin-2) (mCristin-2) Length = 243 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = -3 Query: 217 GPCRVHSSPRGSLGHHRPLLNLKMQCIFSSVCNNLSALSTVTLCRV 80 G C +HS P G GH P +N +C + C++ + T C+V Sbjct: 72 GEC-LHSCPSGYYGHRAPDMNRCARCRIEN-CDSCFSKDFCTKCKV 115
>RSPO2_HUMAN (Q6UXX9) R-spondin-2 precursor (Roof plate-specific spondin-2)| (hRspo2) Length = 243 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = -3 Query: 217 GPCRVHSSPRGSLGHHRPLLNLKMQCIFSSVCNNLSALSTVTLCRV 80 G C +HS P G GH P +N +C + C++ + T C+V Sbjct: 72 GEC-LHSCPSGYYGHRAPDMNRCARCRIEN-CDSCFSKDFCTKCKV 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,727,059 Number of Sequences: 219361 Number of extensions: 853466 Number of successful extensions: 2276 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2190 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2257 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
