>TRUD_LEGPL (Q5WWQ2) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine|
           isomerase D) (tRNA pseudouridylate synthase D)
          Length = 338

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 39  HAPGTT--GIYSLQSPGWEYINRKRHIKYTFP 128
           HAPG    GI +L++PGW+ +   RH K   P
Sbjct: 91  HAPGEVIEGIETLEAPGWKILECTRHNKKLRP 122

>TRUD_LEGPH (Q5ZV19) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine|
           isomerase D) (tRNA pseudouridylate synthase D)
          Length = 338

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 39  HAPGTT--GIYSLQSPGWEYINRKRHIKYTFP 128
           HAPG    GI +L++PGW  +   RH K   P
Sbjct: 91  HAPGEIIDGIETLEAPGWRILECTRHNKKLKP 122

>TRUD_LEGPA (Q5X4T2) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine|
           isomerase D) (tRNA pseudouridylate synthase D)
          Length = 338

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 39  HAPGTT--GIYSLQSPGWEYINRKRHIKYTFP 128
           HAPG    GI +L++PGW  +   RH K   P
Sbjct: 91  HAPGEIIDGIETLEAPGWRILECTRHNKKLKP 122

>DTX_DROME (Q23985) Protein deltex|
          Length = 738

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +1

Query: 22  FSSELNMLPAQQASTHSRVQDGSISIANGT*NIHFXXXXXXXXXXXXXXXTYTVNSRTHH 201
           FS   NML A   S HSR  +GS+     +                    T T + ++H 
Sbjct: 367 FSHAKNMLTASMNSHHSRCSEGSLQSQRSS-----RMGSHRSRSRTRTSDTDTNSVKSHR 421

Query: 202 RRPLLRSV 225
           RRP + +V
Sbjct: 422 RRPSVDTV 429


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,798,449
Number of Sequences: 219361
Number of extensions: 787227
Number of successful extensions: 1836
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1836
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)