ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast60b02 |
|---|---|
| Clone Library Name | barley_pub |
>PATL4_ARATH (Q94C59) Patellin-4| Length = 540 Score = 79.0 bits (193), Expect = 4e-15 Identities = 33/64 (51%), Positives = 52/64 (81%) Frame = -3 Query: 412 YTEEFVPADEGAYTIVVSKGRKVGAGEEAVRNSFRAAEAGKVVITVENATRWRKRVLFRH 233 Y EEFVP +EGAYT++V K +K+GA E +RNSF+ ++AGK+V+TV+N + +K+VL+R+ Sbjct: 473 YKEEFVPTEEGAYTVIVQKVKKMGANEGPIRNSFKNSQAGKIVLTVDNVSGKKKKVLYRY 532 Query: 232 KAKS 221 + K+ Sbjct: 533 RTKT 536
>PATL2_ARATH (Q56ZI2) Patellin-2| Length = 683 Score = 68.2 bits (165), Expect = 7e-12 Identities = 33/65 (50%), Positives = 50/65 (76%), Gaps = 1/65 (1%) Frame = -3 Query: 412 YTEEFVPADEGAYTIVVSKGRKVGAGEEAV-RNSFRAAEAGKVVITVENATRWRKRVLFR 236 Y +F P++E +YT++VSK RKVG +E V +SF+A+EAGKVVIT++N T +K+VL+R Sbjct: 619 YGAQFEPSNEASYTVIVSKNRKVGLTDEPVITDSFKASEAGKVVITIDNQTFKKKKVLYR 678 Query: 235 HKAKS 221 K ++ Sbjct: 679 SKTQA 683
>PATL1_ARATH (Q56WK6) Patellin-1| Length = 573 Score = 63.2 bits (152), Expect = 2e-10 Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 1/64 (1%) Frame = -3 Query: 412 YTEEFVPADEGAYTIVVSKGRKVGAGEEAV-RNSFRAAEAGKVVITVENATRWRKRVLFR 236 Y +F P EG+Y ++VSK RK+G+ +E V +SF+ E GK+VIT++N T +K+VL+R Sbjct: 510 YGAQFEPTTEGSYAVIVSKTRKIGSTDEPVITDSFKVGEPGKIVITIDNQTSKKKKVLYR 569 Query: 235 HKAK 224 K + Sbjct: 570 FKTQ 573
>PATL3_ARATH (Q56Z59) Patellin-3| Length = 490 Score = 56.6 bits (135), Expect = 2e-08 Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%) Frame = -3 Query: 412 YTEEFVPADEGAYTIVVSKGRKVGAGEEAV-RNSFRAAEAGKVVITVENATRWRKRVLFR 236 Y EFVP ++ AYT+V+ K RK+ +E V +SF+ E GKV++TV+N T +K++++R Sbjct: 425 YKAEFVPEEKDAYTVVIQKPRKMRPSDEPVLTHSFKVNELGKVLLTVDNPTSKKKKLVYR 484 Query: 235 HKAK 224 K Sbjct: 485 FNVK 488
>PATL6_ARATH (Q9SCU1) Patellin-6| Length = 409 Score = 55.8 bits (133), Expect = 4e-08 Identities = 27/56 (48%), Positives = 39/56 (69%) Frame = -3 Query: 412 YTEEFVPADEGAYTIVVSKGRKVGAGEEAVRNSFRAAEAGKVVITVENATRWRKRV 245 Y+ EFVP E +Y IVV K +K+ A +EAV NSF EAGK++++V+N +K+V Sbjct: 340 YSAEFVPNAEESYAIVVEKPKKMKATDEAVCNSFTTVEAGKLILSVDNTLSRKKKV 395
>PATL5_ARATH (Q9M0R2) Patellin-5| Length = 668 Score = 55.5 bits (132), Expect = 5e-08 Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Frame = -3 Query: 412 YTEEFVPADEGAYTIVVSKGRKVGAGEE-AVRNSFRAAEAGKVVITVENATRWRKRVLFR 236 Y EFVP ++ YT+++ K RK+ A E V +SF+ E G++++TV+N T +K +++R Sbjct: 600 YGAEFVPENKEGYTVIIQKPRKMTAKNELVVSHSFKVGEVGRILLTVDNPTSTKKMLIYR 659 Query: 235 HKAK 224 K K Sbjct: 660 FKVK 663
>AMYI_SACDI (P29760) Glucoamylase S2 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAII) Length = 768 Score = 34.7 bits (78), Expect = 0.092 Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 9/121 (7%) Frame = +3 Query: 72 NTTRCTTSDCSLAQKNGMNVEST----NVESTHTQRSQLPKNLPPNLQHFLARALLA-LC 236 +TT TT S + K G + +T N+ +T+ + P + + +F + +C Sbjct: 155 STTVVTTEYASTSTKQGGEITTTFVTKNIPTTYLT-TIAPTSSVTTVTNFTPTTITTTVC 213 Query: 237 RKSTRFLQRVAFS----TVITTLPASAARNELRTASSPAPTFLPLLTTMVYAPSSAGTNS 404 T TV TT+P S E T ++ AP + TT+V SS GTNS Sbjct: 214 STGTNSAGETTSGCSPKTVTTTVPCSTGTGEYTTEAT-APVTTAVTTTVVTTESSTGTNS 272 Query: 405 S 407 + Sbjct: 273 A 273
>VGLX_EHV1B (P28968) Glycoprotein X precursor| Length = 797 Score = 34.7 bits (78), Expect = 0.092 Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 4/116 (3%) Frame = +3 Query: 75 TTRCTTSDCSLAQKNGMNVES--TNVESTHTQRSQLPKNLPPNLQHFLARALLALCRKST 248 TT TT+ S +G + S TN S+ T + PP H + + + ST Sbjct: 24 TTTETTTSSSSTSGSGQSTSSGTTNSSSSPTTSPPTTSSSPPTSTHTSSPSSTSTQSSST 83 Query: 249 RFLQRVAFSTV--ITTLPASAARNELRTASSPAPTFLPLLTTMVYAPSSAGTNSSV 410 A ST T++P S + E T + A T P TT AP++A T ++V Sbjct: 84 AATSSSAPSTASSTTSIPTSTS-TETTTTTPTASTTTP--TTTTAAPTTAATTTAV 136
>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor| Length = 866 Score = 34.7 bits (78), Expect = 0.092 Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 4/116 (3%) Frame = +3 Query: 75 TTRCTTSDCSLAQKNGMNVES--TNVESTHTQRSQLPKNLPPNLQHFLARALLALCRKST 248 TT TT+ S +G + S TN S+ T + PP H + + + ST Sbjct: 24 TTTETTTSSSSTSGSGQSTSSGTTNSSSSPTTSPPTTSSSPPTSTHTSSPSSTSTQSSST 83 Query: 249 RFLQRVAFSTV--ITTLPASAARNELRTASSPAPTFLPLLTTMVYAPSSAGTNSSV 410 A ST T++P S + E T + A T P TT AP++A T ++V Sbjct: 84 AATSSSAPSTASSTTSIPTSTS-TETTTTTPTASTTTP--TTTTAAPTTAATTTAV 136
>AMYH_SACDI (P04065) Glucoamylase S1 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAI) Length = 767 Score = 33.5 bits (75), Expect = 0.20 Identities = 19/44 (43%), Positives = 25/44 (56%) Frame = +3 Query: 276 TVITTLPASAARNELRTASSPAPTFLPLLTTMVYAPSSAGTNSS 407 TV TT+P S E T ++ AP + TT+V SS GTNS+ Sbjct: 230 TVTTTVPCSTGTGEYTTEAT-APVTTAVTTTVVTTESSTGTNSA 272
>SFRIP_HUMAN (Q99590) SFRS2-interacting protein (Splicing factor,| arginine/serine-rich 2-interacting protein) (SC35-interacting protein 1) (CTD-associated SR protein 11) (Splicing regulatory protein 129) (SRrp129) (NY-REN-40 antigen) Length = 1148 Score = 31.2 bits (69), Expect = 1.0 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = +3 Query: 297 ASAARNELRTASSPAPTFLPLLTTMVYAPSSAGTNSS 407 +S N + T PAPT P T MV PSS T+SS Sbjct: 992 SSHVSNNMSTPVLPAPTAAPGNTGMVQGPSSGNTSSS 1028
>CPB3_CAEEL (O01835) Cytoplasmic polyadenylation element-binding protein 3| Length = 751 Score = 30.8 bits (68), Expect = 1.3 Identities = 28/121 (23%), Positives = 46/121 (38%) Frame = +3 Query: 45 STAKQWCPPNTTRCTTSDCSLAQKNGMNVESTNVESTHTQRSQLPKNLPPNLQHFLARAL 224 S+A + P TTR + SL+ KNG N N H + P + Q AL Sbjct: 569 SSASKAFPGATTRRSQVSSSLSLKNGSNNSQVNNSIPHFPSAGFPIIVGAPAQ--TLSAL 626 Query: 225 LALCRKSTRFLQRVAFSTVITTLPASAARNELRTASSPAPTFLPLLTTMVYAPSSAGTNS 404 + + L+ F +T P+ +N P + +T V +P + ++ Sbjct: 627 YGYIQNGQQLLKPAVFEPPMTPSPSEINKNRRSFTEFSTPPTVFFNSTPVISPQKSVSDG 686 Query: 405 S 407 S Sbjct: 687 S 687
>ATPB_CHICK (Q5ZLC5) ATP synthase beta chain, mitochondrial precursor (EC| 3.6.3.14) Length = 533 Score = 30.4 bits (67), Expect = 1.7 Identities = 16/32 (50%), Positives = 21/32 (65%) Frame = +3 Query: 297 ASAARNELRTASSPAPTFLPLLTTMVYAPSSA 392 ASAAR LR A+ P+ FLPLL + P++A Sbjct: 13 ASAARPALRRAAGPSHGFLPLLLSRGAGPAAA 44
>FANCJ_HUMAN (Q9BX63) Fanconi anemia group J protein (EC 3.6.1.-) (ATP-dependent| RNA helicase BRIP1) (Protein FACJ) (BRCA1-interacting protein C-terminal helicase 1) (BRCA1-interacting protein 1) (BRCA1-associated C-terminal helicase 1) Length = 1249 Score = 30.4 bits (67), Expect = 1.7 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%) Frame = +3 Query: 24 SHINNNNSTAKQWCPPNTTRCTTSDCSLAQKNGMNVESTN-VESTHTQRSQLPKNLPPNL 200 S + NS + Q P + +RC S K G + ES+N ++ HT +S++PK Sbjct: 197 SPLEKINSFSPQKPPGHCSRCCCST-----KQGNSQESSNTIKKDHTGKSKIPK------ 245 Query: 201 QHFLARALLALCRKSTRFLQRVAFSTVITTLPAS 302 +F R + + TR L+R A+S V T+ +S Sbjct: 246 IYFGTRTHKQIA-QITRELRRTAYSGVPMTILSS 278
>NUMB1_CAEEL (Q9XTY6) Numb-related protein 1 (Protein kinase C adapter 1) (CKA1)| Length = 593 Score = 30.0 bits (66), Expect = 2.3 Identities = 26/79 (32%), Positives = 35/79 (44%) Frame = +3 Query: 126 NVESTNVESTHTQRSQLPKNLPPNLQHFLARALLALCRKSTRFLQRVAFSTVITTLPASA 305 N E E T TQ P N NL + R +++ R+L S +I +PAS Sbjct: 259 NWEDNTSEGTSTQN---PSNSRSNLAYQSFRKHVSI---EDRYLDPQ--SVIINEVPASN 310 Query: 306 ARNELRTASSPAPTFLPLL 362 +E+R S P PT P L Sbjct: 311 HMDEIRRISKPRPTGNPAL 329
>DPOE_DEBHA (Q6BNG2) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2226 Score = 30.0 bits (66), Expect = 2.3 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 34/83 (40%) Frame = -1 Query: 150 ILHSWILHSFHSFVQESSH*WYI-----VSCLAGTIVL---------------------- 52 + H IL+SF+ +V WY ++CL G ++ Sbjct: 830 LAHKVILNSFYGYVMRKGSRWYSMEMAGITCLTGATIIQMARSLVERLGRPLELDTDGIW 889 Query: 51 -------PWNYYYLCEKYKEIFL 4 P NYY+ C+ K IFL Sbjct: 890 CILPKSFPENYYFKCKDGKNIFL 912
>ITAV_CHICK (P26008) Integrin alpha-V precursor (Vitronectin receptor alpha| subunit) [Contains: Integrin alpha-V heavy chain; Integrin alpha-V light chain] Length = 1034 Score = 29.6 bits (65), Expect = 2.9 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Frame = +3 Query: 9 KSPYISHINNNNSTAKQWCP---PNTTRCTTSDCSLAQKNGMNVESTNVESTHTQRSQLP 179 ++ +I + NN + A+ C N TR D K G + + S H Q+S++ Sbjct: 666 QADFIGVVRNNEALARLSCAFKTENQTRMVVCDLGNPMKAGTKLLAGLRFSVH-QQSEMD 724 Query: 180 KNLPPNLQHFLARALLALCRKSTRF--LQRVAFSTVITTLPASAARNELRTASSPAPTFL 353 ++ +LQ R S F L VAF V + A+ E+R SSP FL Sbjct: 725 TSVKFDLQ----------IRSSNLFDNLSPVAFYQVDLAISAAV---EIRGVSSPDHIFL 771 Query: 354 PL 359 P+ Sbjct: 772 PI 773
>ATS12_HUMAN (P58397) ADAMTS-12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 12) (ADAM-TS 12) (ADAM-TS12) Length = 1593 Score = 29.3 bits (64), Expect = 3.8 Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 2/116 (1%) Frame = +3 Query: 63 CPPNTTRCTTSDCSLAQKNGMNVESTNVESTHTQRSQLPKNLPPNLQHFLARALLAL--C 236 CP + T S+CS++ G+ + S H + + + PN +RAL L C Sbjct: 943 CPSDWTVGNWSECSVSCGGGVRIRSVTCAKNHDEPCDVTRK--PN-----SRALCGLQQC 995 Query: 237 RKSTRFLQRVAFSTVITTLPASAARNELRTASSPAPTFLPLLTTMVYAPSSAGTNS 404 S R L+ S +N P PT P + T P S T++ Sbjct: 996 PSSRRVLKP-------NKGTISNGKNPPTLKPVPPPTSRPRMLTTPTGPESMSTST 1044
>RBP16_DROME (Q9GQN0) Ran-binding protein 16| Length = 1098 Score = 28.9 bits (63), Expect = 5.0 Identities = 11/21 (52%), Positives = 17/21 (80%) Frame = +3 Query: 192 PNLQHFLARALLALCRKSTRF 254 PNLQHF+ +AL++L K T++ Sbjct: 89 PNLQHFVVQALVSLLAKLTKY 109
>DNAJ_PROMM (Q7V9C8) Chaperone protein dnaJ| Length = 378 Score = 28.5 bits (62), Expect = 6.6 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -1 Query: 258 GGSGCSSGTRPRAPSPRSAEDLGAD 184 GG+G S G RPR P+ +DL D Sbjct: 98 GGAGGSGGARPRRRGPQQGDDLRYD 122
>IMDH_AQUAE (O67820) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) Length = 490 Score = 28.5 bits (62), Expect = 6.6 Identities = 17/38 (44%), Positives = 19/38 (50%) Frame = -3 Query: 355 GRKVGAGEEAVRNSFRAAEAGKVVITVENATRWRKRVL 242 G VG GEE + EAG VI V+ A KRVL Sbjct: 225 GAAVGTGEETLDRVAALVEAGVDVIVVDTAHGHSKRVL 262
>UMP6_ARATH (Q9SX77) Unknown protein At1g47420, mitochondrial precursor| Length = 257 Score = 28.1 bits (61), Expect = 8.6 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = -3 Query: 364 VSKGRKVGAGEEAVRNSFRAAEA 296 +SK AG+EA++N FRAAEA Sbjct: 131 ISKNTDDKAGQEALKNVFRAAEA 153
>VGP_MABVM (P35253) Structural glycoprotein precursor (Virion spike| glycoprotein) Length = 681 Score = 28.1 bits (61), Expect = 8.6 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Frame = +3 Query: 21 ISHINNNNSTAKQWCPP-NTTRCTTSDCSLAQKNGM-----NVESTNVESTHTQRSQ 173 ++ ++ NN+TA+ PP NTT +T++ S + + N + N +ST T+ Q Sbjct: 319 VTELDKNNTTAQPSMPPHNTTTISTNNTSKHNFSTLSAPLQNTTNDNTQSTITENEQ 375
>DPOE_USTMA (Q4PFV5) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2305 Score = 28.1 bits (61), Expect = 8.6 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 9/54 (16%) Frame = -1 Query: 186 DSLEAEIFVCVW----ILHSWILHSFHSFVQESSH*WYI-----VSCLAGTIVL 52 D++EA+ + ++ + H IL+SF+ +V WY ++CL G ++ Sbjct: 832 DTIEAKKMIVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGITCLTGASII 885 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,335,383 Number of Sequences: 219361 Number of extensions: 1012448 Number of successful extensions: 3774 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3662 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3764 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
