ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast60a02 |
|---|---|
| Clone Library Name | barley_pub |
>PHB2_RAT (Q5XIH7) Prohibitin-2 (B-cell receptor-associated protein BAP37)| (BAP-37) Length = 299 Score = 40.4 bits (93), Expect = 0.001 Identities = 15/36 (41%), Positives = 27/36 (75%) Frame = -2 Query: 390 LIGNAIANNPAFVALRQIEAAREIAHTIAVSNNKVF 283 ++G A++ NP ++ LR+I AA+ I+ TIA S N+++ Sbjct: 237 MLGEALSKNPGYIKLRKIRAAQNISKTIATSQNRIY 272
>PHB2_MOUSE (O35129) Prohibitin-2 (B-cell receptor-associated protein BAP37)| (Repressor of estrogen receptor activity) Length = 299 Score = 40.4 bits (93), Expect = 0.001 Identities = 15/36 (41%), Positives = 27/36 (75%) Frame = -2 Query: 390 LIGNAIANNPAFVALRQIEAAREIAHTIAVSNNKVF 283 ++G A++ NP ++ LR+I AA+ I+ TIA S N+++ Sbjct: 237 MLGEALSKNPGYIKLRKIRAAQNISKTIATSQNRIY 272
>PHB2_HUMAN (Q99623) Prohibitin-2 (B-cell receptor-associated protein BAP37)| (Repressor of estrogen receptor activity) (D-prohibitin) Length = 299 Score = 40.4 bits (93), Expect = 0.001 Identities = 15/36 (41%), Positives = 27/36 (75%) Frame = -2 Query: 390 LIGNAIANNPAFVALRQIEAAREIAHTIAVSNNKVF 283 ++G A++ NP ++ LR+I AA+ I+ TIA S N+++ Sbjct: 237 MLGEALSKNPGYIKLRKIRAAQNISKTIATSQNRIY 272
>PHB2_CAEEL (P50093) Mitochondrial prohibitin complex protein 2 (Prohibitin-2)| Length = 286 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/36 (44%), Positives = 26/36 (72%) Frame = -2 Query: 390 LIGNAIANNPAFVALRQIEAAREIAHTIAVSNNKVF 283 L+G A+ N+P F+ LR+I AA++IA ++ S NK + Sbjct: 228 LLGEAMKNDPGFLKLRKIRAAQKIARIVSESGNKTY 263
>ZO1_HUMAN (Q07157) Tight junction protein ZO-1 (Zonula occludens 1 protein)| (Zona occludens 1 protein) (Tight junction protein 1) Length = 1748 Score = 32.3 bits (72), Expect = 0.28 Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 9/104 (8%) Frame = -3 Query: 365 TLLLSHSGRL--KPPGRSPTPSQSPTTRCSWTQAXXXXXXXXXXXXXXXXRNETVSCHAR 192 +L HSGR +PP RS S+SP R + E +S Sbjct: 294 SLASDHSGRSHDRPPRRSR--SRSPDQRSEPSDHSRHSPQQPSNGSLRSRDEERISKPGA 351 Query: 191 CGY-------HRPVSIEESTFERNERLVSGIPNPKTRRPCYCEL 81 H P ++EE T ERNE+ +P PK P Y ++ Sbjct: 352 VSTPVKHADDHTPKTVEEVTVERNEKQTPSLPEPK---PVYAQV 392
>PHB2_YEAST (P50085) Prohibitin-2| Length = 315 Score = 31.6 bits (70), Expect = 0.48 Identities = 15/35 (42%), Positives = 24/35 (68%) Frame = -2 Query: 390 LIGNAIANNPAFVALRQIEAAREIAHTIAVSNNKV 286 LIG AI + +V L++++ AR+IA +A S N+V Sbjct: 254 LIGEAIKKSRDYVELKRLDTARDIAKILASSPNRV 288
>ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens 1 protein)| (Zona occludens 1 protein) (Tight junction protein 1) Length = 1745 Score = 30.0 bits (66), Expect = 1.4 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 9/104 (8%) Frame = -3 Query: 365 TLLLSHSGRL--KPPGRSPTPSQSPTTRCSWTQAXXXXXXXXXXXXXXXXRNETVSCHAR 192 +L HSGR +PP RS S+SP R + E +S Sbjct: 294 SLASDHSGRSHDRPPRRSQ--SRSPDQRSEPSDHSTQSPQQPSNGSLRSREEERMSKPGA 351 Query: 191 CGY-------HRPVSIEESTFERNERLVSGIPNPKTRRPCYCEL 81 H P ++EE T E+NE+ +P PK P Y ++ Sbjct: 352 ISTPVKHVDDHPPKAVEEVTVEKNEKQTPTLPEPK---PVYAQV 392
>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1)| (Protein kinase with no lysine 2) (Protein kinase, lysine-deficient 2) Length = 2297 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -3 Query: 383 VMPSPTTLLLSHSGRLKPPGRSPTPSQSPT 294 V+P P+T + + G+ PPG+ P P PT Sbjct: 709 VLPPPSTPMPTGPGQPAPPGQQPPPLAQPT 738
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 28.5 bits (62), Expect = 4.1 Identities = 22/94 (23%), Positives = 32/94 (34%) Frame = -3 Query: 377 PSPTTLLLSHSGRLKPPGRSPTPSQSPTTRCSWTQAXXXXXXXXXXXXXXXXRNETVSCH 198 P P T +H GRS +PS T R +WT A + T + Sbjct: 2718 PVPNTTATTH-------GRSLSPSSPHTVRTAWTSATSGTLGTTHITEPSTGTSHTPAAT 2770 Query: 197 ARCGYHRPVSIEESTFERNERLVSGIPNPKTRRP 96 H ++ S+ + R P+P T P Sbjct: 2771 TGTTQHSTPAL--SSPHPSSRTTESPPSPGTTTP 2802
>FOXB1_MOUSE (Q64732) Forkhead box protein B1 (Transcription factor FKH-5)| Length = 325 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/33 (45%), Positives = 21/33 (63%) Frame = -3 Query: 380 MPSPTTLLLSHSGRLKPPGRSPTPSQSPTTRCS 282 +P+P LLS+S PP SPT SQ+ T++ S Sbjct: 276 LPAPIPTLLSNS----PPSLSPTSSQTATSQSS 304
>FOXB1_HUMAN (Q99853) Forkhead box protein B1 (Transcription factor FKH-5)| Length = 324 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/33 (45%), Positives = 21/33 (63%) Frame = -3 Query: 380 MPSPTTLLLSHSGRLKPPGRSPTPSQSPTTRCS 282 +P+P LLS+S PP SPT SQ+ T++ S Sbjct: 275 LPAPIPTLLSNS----PPSLSPTSSQTATSQSS 303
>SELV_HUMAN (P59797) Selenoprotein V| Length = 346 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -3 Query: 377 PSPTTLLLSHSGRLKPPGRSPTPSQSPT 294 P+P++ S S R P R+PTP ++PT Sbjct: 8 PAPSSARTSTSVRASTPTRTPTPLRTPT 35
>LGRC_BREPA (Q70LM5) Linear gramicidin synthetase subunit C [Includes:| ATP-dependent valine adenylase (ValA) (Valine activase); ATP-dependent D-valine adenylase (D-ValA) (D-valine activase); Valine racemase [ATP-hydrolyzing] (EC 5.1.1.-); ATP-dependent tr Length = 7756 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/32 (34%), Positives = 22/32 (68%) Frame = -1 Query: 301 LQQQGVPGLRRPAAWAPVAQDVEQQQQEMRPF 206 L ++ +PG++R AA+ VA+D +Q ++R + Sbjct: 7122 LAREDMPGVKRLAAYVVVAEDDAEQADDLRGY 7153
>UNG_PRVIF (P52506) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 315 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 295 QQGVPGLRRPAAWAPVAQDVEQQQQEMRP 209 ++GVPG P WA + + V Q+ E RP Sbjct: 223 RRGVPGSHAPLGWARLVRAVVQRLCETRP 251
>UNG_PRVKA (P52507) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 316 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 295 QQGVPGLRRPAAWAPVAQDVEQQQQEMRP 209 ++GVPG P WA + + V Q+ E RP Sbjct: 224 RRGVPGSHAPLGWARLVRAVVQRLCETRP 252
>PRIA_MYCLE (Q9CCQ3) Putative primosomal protein N' (EC 3.6.1.-) (ATP-dependent| helicase priA) (Replication factor Y) Length = 651 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +3 Query: 270 RLSPGTPCCWRLRWCGRSPWRLQSA 344 R +PGT CC WCGR+ L+ A Sbjct: 392 RATPGTVCC----WCGRADLTLRCA 412
>YNL5_CAEEL (Q21955) Hypothetical protein R12B2.5| Length = 780 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 313 HHRSLQQQGVPGLRRPAAWAPVAQDVEQQQQEMR 212 HH Q G PG R AA AQ +QQQQ+ + Sbjct: 320 HHN---QMGPPGDRNVAAQRAAAQQQQQQQQQQQ 350
>K1043_MOUSE (Q80XJ3) TPR repeat-containing protein KIAA1043| Length = 1691 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = +1 Query: 115 LGMPETKRSFLSKVLSSIETGRW*PQRA*QETVSFLVVVVQHLERLEPKQQVA 273 LG+P L K++++ ETG RA + V L V+ L+ E +Q A Sbjct: 1060 LGLPNPALQALCKLITASETGEQLISRAVKNMVGMLHQVLVQLQACEKEQDFA 1112
>DLL_DROME (P20009) Homeotic protein distal-less (Protein brista)| Length = 327 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -3 Query: 332 PPGRSPTPSQSPTTRCS 282 PPG SPTPS +P + S Sbjct: 232 PPGHSPTPSSTPVSELS 248
>CRBN_XENTR (Q640S2) Protein cereblon| Length = 447 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = -3 Query: 383 VMPSPTTLLL--SHSGRLKPPGRSPTPSQSPTTRCSW 279 V+P P T L S S L P P +SP ++C W Sbjct: 190 VLPCPMTSLQLDSQSRHLLFPTNKPVSGRSPQSKCQW 226 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,048,688 Number of Sequences: 219361 Number of extensions: 992315 Number of successful extensions: 3385 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3175 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3368 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
