>gb|BT009017.1| Triticum aestivum clone wdk3c.pk006.l8:fis, full insert mRNA
           sequence
          Length = 984

 Score =  161 bits (81), Expect = 2e-36
 Identities = 129/145 (88%)
 Strand = Plus / Minus

                                                                       
Query: 224 gcgctttcgaccatcccatgtggcatgcttggtacaccgtccataccgatgtctatcagg 283
           ||||||||||||||||||||| ||| ||||  |  ||| ||| ||| |||| ||||  | 
Sbjct: 720 gcgctttcgaccatcccatgttgcaggcttcttcaaccctccgtactgatggctattggt 661

                                                                       
Query: 284 ttactgtttacttctgcgactccagagccttcaggacttcctctcccattcgcttgcatc 343
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttgatgtttacttctgcgactccagagccttcaggacttcctctcccattcgcttgcatc 601

                                    
Query: 344 caaccaatgtcgttccaggagaata 368
           ||||||||||||| |||||||||||
Sbjct: 600 caaccaatgtcgtcccaggagaata 576



 Score =  125 bits (63), Expect = 1e-25
 Identities = 163/193 (84%), Gaps = 15/193 (7%)
 Strand = Plus / Minus

                                                                       
Query: 18  cattccatccaggtgcaaagggaatcatccccatttttctatccat---ggacacaattc 74
           ||||||| |||||||||||||||| |||||||||||||||||||||   |||||||||||
Sbjct: 949 cattccagccaggtgcaaagggaaccatccccatttttctatccatcacggacacaattc 890

                                                                       
Query: 75  attcaatcgaggcacacgaaaatcattccgacgagcaatggaaagggaaaaggcgactca 134
           |||||||| ||||||||  ||||| |||| |||       |||||||||||| ||    |
Sbjct: 889 attcaatcaaggcacacacaaatctttccaacg------cgaaagggaaaagacg----a 840

                                                                       
Query: 135 tccgctaaaattcctgcactgaactacaagggcggaagcagacaaaca-gaaacaaaatc 193
           |||||| ||||||||||||  |||||||||||||||||||| ||||||  ||| ||||||
Sbjct: 839 tccgct-aaattcctgcacccaactacaagggcggaagcaggcaaacataaaaaaaaatc 781

                        
Query: 194 acgcaatccaggg 206
           || ||||||||||
Sbjct: 780 acacaatccaggg 768

>ref|XM_469071.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1712

 Score =  105 bits (53), Expect = 1e-19
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                        
Query: 296  tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaatgtcg 355
            |||||||||| | || ||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 1367 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaaggtcg 1308

                         
Query: 356  ttccaggagaata 368
            |||||||||||||
Sbjct: 1307 ttccaggagaata 1295

>dbj|AK120254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045L02, full
            insert sequence
          Length = 1540

 Score =  105 bits (53), Expect = 1e-19
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                        
Query: 296  tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaatgtcg 355
            |||||||||| | || ||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 1199 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaaggtcg 1140

                         
Query: 356  ttccaggagaata 368
            |||||||||||||
Sbjct: 1139 ttccaggagaata 1127

>dbj|AK066745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084N20, full
           insert sequence
          Length = 839

 Score =  105 bits (53), Expect = 1e-19
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                       
Query: 296 tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaatgtcg 355
           |||||||||| | || ||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 577 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaaggtcg 518

                        
Query: 356 ttccaggagaata 368
           |||||||||||||
Sbjct: 517 ttccaggagaata 505

>gb|BT016862.1| Zea mays clone Contig695 mRNA sequence
          Length = 1573

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                    
Query: 312 cttcaggacttcctctcccattcgcttgcatccaaccaatgtcgttccaggagaata 368
           |||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 344 cttcaggacttcttcccccatccgcttgcatccaaccaatgttgttccaggagaata 400

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                       
Query: 296      tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaa 350
                |||||||||| | || ||||||||||||||||||||||||||||||||| |||||
Sbjct: 25303853 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaa 25303799

>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete
              sequence
          Length = 152828

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Plus

                                                                     
Query: 296    tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaa 350
              |||||||||| | || ||||||||||||||||||||||||||||||||| |||||
Sbjct: 139507 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaa 139561

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                       
Query: 296      tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaa 350
                |||||||||| | || ||||||||||||||||||||||||||||||||| |||||
Sbjct: 25395162 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaa 25395108

>gb|BT017009.1| Zea mays clone EK07D2310G02.c mRNA sequence
          Length = 1036

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                    
Query: 312 cttcaggacttcctctcccattcgcttgcatccaaccaatgtcgttccaggagaata 368
           ||||| ||||||||| ||||| |||||||||||||||| ||| ||||||||||||||
Sbjct: 750 cttcaagacttcctcccccatccgcttgcatccaaccagtgttgttccaggagaata 694

>gb|AY108697.1| Zea mays PCO126508 mRNA sequence
          Length = 1558

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                     
Query: 312  cttcaggacttcctctcccattcgcttgcatccaaccaatgtcgttccaggagaata 368
            ||||| ||||||||| ||||| |||||||||||||||| ||| ||||||||||||||
Sbjct: 1265 cttcaagacttcctcccccatccgcttgcatccaaccagtgttgttccaggagaata 1209

>gb|AY112331.1| Zea mays CL362_2 mRNA sequence
          Length = 604

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 334 cgcttgcatccaaccaatgtcgttccaggagaata 368
           |||||||||||||||||||| ||||||||||||||
Sbjct: 303 cgcttgcatccaaccaatgttgttccaggagaata 269

>dbj|AP001002.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-678K21, complete
              sequences
          Length = 164380

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 48     ccatttttctatccatggacac 69
              ||||||||||||||||||||||
Sbjct: 101132 ccatttttctatccatggacac 101111

>gb|BT013694.1| Lycopersicon esculentum clone 132535R, mRNA sequence
          Length = 2264

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 107 gagcaatggaaagggaaaagg 127
           |||||||||||||||||||||
Sbjct: 247 gagcaatggaaagggaaaagg 227

>ref|XM_779501.1| PREDICTED: Strongylocentrotus purpuratus similar to calcyphosphine
           2 (LOC579381), mRNA
          Length = 2154

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 171 agcagacaaacagaaacaaaa 191
           |||||||||||||||||||||
Sbjct: 159 agcagacaaacagaaacaaaa 179

>emb|AL117353.6|HSJ944F13 Human DNA sequence from clone RP5-944F13 on chromosome 1p31.2-32.1
             Contains part of gene KIAA1365, complete sequence
          Length = 113515

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   agacaaacagaaacaaaatca 194
             |||||||||||||||||||||
Sbjct: 22922 agacaaacagaaacaaaatca 22942

>gb|AC079630.18| Homo sapiens 12 BAC RP11-476D10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 178388

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 48     ccatttttctatccatggaca 68
              |||||||||||||||||||||
Sbjct: 163497 ccatttttctatccatggaca 163517

>gb|AC161620.5| Pan troglodytes BAC clone CH251-232H7 from chromosome unknown, complete
              sequence
          Length = 204271

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 48     ccatttttctatccatggaca 68
              |||||||||||||||||||||
Sbjct: 145087 ccatttttctatccatggaca 145067

>gb|AC005828.1|AC005828 Homo sapiens chromosome 17, clone hRPK.269_G_24, complete sequence
          Length = 163685

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 111   aatggaaagggaaaaggcgac 131
             |||||||||||||||||||||
Sbjct: 62792 aatggaaagggaaaaggcgac 62812

>ref|XM_791287.1| PREDICTED: Strongylocentrotus purpuratus similar to Nasopharyngeal
           epithelium specific protein 1 (LOC591735), partial mRNA
          Length = 1158

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 aagcagacaaacagaaacaa 189
           ||||||||||||||||||||
Sbjct: 425 aagcagacaaacagaaacaa 444

>dbj|AK158464.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
            library, clone:F930118H22 product:hypothetical protein,
            full insert sequence
          Length = 1976

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   ccatttttctatccatggac 67
            ||||||||||||||||||||
Sbjct: 1078 ccatttttctatccatggac 1059

>gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosome 14, complete
             sequence
          Length = 206798

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   gcagacaaacagaaacaaaa 191
             ||||||||||||||||||||
Sbjct: 94934 gcagacaaacagaaacaaaa 94915

>gb|AC079171.22| Homo sapiens X BAC RP11-791M20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 147895

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   acaaacagaaacaaaatcac 195
             ||||||||||||||||||||
Sbjct: 96573 acaaacagaaacaaaatcac 96554

>ref|NM_001033477.1| Mus musculus gene model 1322, (NCBI) (Gm1322), mRNA
          Length = 1976

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   ccatttttctatccatggac 67
            ||||||||||||||||||||
Sbjct: 1078 ccatttttctatccatggac 1059

>emb|Z81107.1|CER07H5 Caenorhabditis elegans Cosmid R07H5, complete sequence
          Length = 33802

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    aatcatccccatttttctat 59
             ||||||||||||||||||||
Sbjct: 14209 aatcatccccatttttctat 14228

>emb|Z81049.1|CEC48D1 Caenorhabditis elegans Cosmid C48D1, complete sequence
          Length = 39908

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    aatcatccccatttttctat 59
             ||||||||||||||||||||
Sbjct: 32683 aatcatccccatttttctat 32664

>emb|AL845473.7| Mouse DNA sequence from clone RP23-212E8 on chromosome 2, complete
              sequence
          Length = 189998

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     ccatttttctatccatggac 67
              ||||||||||||||||||||
Sbjct: 137663 ccatttttctatccatggac 137644

>gb|AC111202.5| Mus musculus BAC clone RP23-338I3 from 9, complete sequence
          Length = 200266

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 1      aaaacaaacttccgttccattcca 24
              |||||||||||| |||||||||||
Sbjct: 179710 aaaacaaacttctgttccattcca 179687

>emb|AL845531.3| Mouse DNA sequence from clone RP23-232I4 on chromosome 2, complete
             sequence
          Length = 120366

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   caggttactgtttacttctg 299
             ||||||||||||||||||||
Sbjct: 72491 caggttactgtttacttctg 72472

>emb|AL670544.7| Mouse DNA sequence from clone RP23-16G8 on chromosome X, complete
              sequence
          Length = 236946

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 311    ccttcaggacttcctctcccattc 334
              ||||||| ||||||||||||||||
Sbjct: 125484 ccttcagtacttcctctcccattc 125507

>emb|AL713912.8| Mouse DNA sequence from clone RP23-85C14 on chromosome 4, complete
             sequence
          Length = 46478

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 7     aacttccgttccattccatccagg 30
             |||| |||||||||||||||||||
Sbjct: 39175 aactcccgttccattccatccagg 39152


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,044,531
Number of Sequences: 3902068
Number of extensions: 3044531
Number of successful extensions: 66824
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66742
Number of HSP's gapped (non-prelim): 81
length of query: 368
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 346
effective length of database: 17,147,199,772
effective search space: 5932931121112
effective search space used: 5932931121112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)