| Clone Name | rbast59g08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_193298.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 948 Score = 103 bits (52), Expect = 4e-19 Identities = 127/152 (83%) Strand = Plus / Minus Query: 219 agctctgcatcgatggcattgcgtgcggtttccaggtcttcatctaggaatatgtcccag 278 ||||| ||||||||||| |||| |||| || ||||| || || ||||| |||||||| Sbjct: 926 agctccgcatcgatggctctgcgcgcggcgtcgaggtcctcgtcgaggaagatgtcccaa 867 Query: 279 tgcccatcccaccggatgaagaactcagtgtcttgcaagtacttgacacggtgcacgtcc 338 || || ||||| |||||||||||||| ||||| | ||||||||||| ||||||||||| Sbjct: 866 tggccgtcccagcggatgaagaactcggtgtcctcgaagtacttgacgcggtgcacgtcg 807 Query: 339 cccgcaggcgtgaacaggaagtccccgtcgac 370 || || |||||||| |||||||| |||||||| Sbjct: 806 ccggccggcgtgaagaggaagtcgccgtcgac 775
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 103 bits (52), Expect = 4e-19 Identities = 127/152 (83%) Strand = Plus / Minus Query: 219 agctctgcatcgatggcattgcgtgcggtttccaggtcttcatctaggaatatgtcccag 278 ||||| ||||||||||| |||| |||| || ||||| || || ||||| |||||||| Sbjct: 19969118 agctccgcatcgatggctctgcgcgcggcgtcgaggtcctcgtcgaggaagatgtcccaa 19969059 Query: 279 tgcccatcccaccggatgaagaactcagtgtcttgcaagtacttgacacggtgcacgtcc 338 || || ||||| |||||||||||||| ||||| | ||||||||||| ||||||||||| Sbjct: 19969058 tggccgtcccagcggatgaagaactcggtgtcctcgaagtacttgacgcggtgcacgtcg 19968999 Query: 339 cccgcaggcgtgaacaggaagtccccgtcgac 370 || || |||||||| |||||||| |||||||| Sbjct: 19968998 ccggccggcgtgaagaggaagtcgccgtcgac 19968967
>dbj|AP004361.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24 Length = 148362 Score = 103 bits (52), Expect = 4e-19 Identities = 127/152 (83%) Strand = Plus / Minus Query: 219 agctctgcatcgatggcattgcgtgcggtttccaggtcttcatctaggaatatgtcccag 278 ||||| ||||||||||| |||| |||| || ||||| || || ||||| |||||||| Sbjct: 72027 agctccgcatcgatggctctgcgcgcggcgtcgaggtcctcgtcgaggaagatgtcccaa 71968 Query: 279 tgcccatcccaccggatgaagaactcagtgtcttgcaagtacttgacacggtgcacgtcc 338 || || ||||| |||||||||||||| ||||| | ||||||||||| ||||||||||| Sbjct: 71967 tggccgtcccagcggatgaagaactcggtgtcctcgaagtacttgacgcggtgcacgtcg 71908 Query: 339 cccgcaggcgtgaacaggaagtccccgtcgac 370 || || |||||||| |||||||| |||||||| Sbjct: 71907 ccggccggcgtgaagaggaagtcgccgtcgac 71876
>ref|NM_111359.2| Arabidopsis thaliana ZDS (ZETA-CAROTENE DESATURASE); carotene 7,8-desaturase AT3G04870 (ZDS) transcript variant AT3G04870.1 mRNA, complete cds Length = 3033 Score = 69.9 bits (35), Expect = 6e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 246 gtttccaggtcttcatctaggaatatgtcccagtgcccatcccaccggatgaagaactca 305 ||||| |||||||| || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 2071 gtttcgaggtcttcgtcaaggaatatgtcccaatggccatcccaagtgatgaagaactca 2130 Query: 306 gtgtctt 312 ||||||| Sbjct: 2131 gtgtctt 2137
>ref|NM_202493.1| Arabidopsis thaliana ZDS (ZETA-CAROTENE DESATURASE); carotene 7,8-desaturase AT3G04870 (ZDS) transcript variant AT3G04870.2 mRNA, complete cds Length = 3055 Score = 69.9 bits (35), Expect = 6e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 246 gtttccaggtcttcatctaggaatatgtcccagtgcccatcccaccggatgaagaactca 305 ||||| |||||||| || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 2093 gtttcgaggtcttcgtcaaggaatatgtcccaatggccatcccaagtgatgaagaactca 2152 Query: 306 gtgtctt 312 ||||||| Sbjct: 2153 gtgtctt 2159
>ref|NM_111360.1| Arabidopsis thaliana DRT102 (DNA-DAMAGE-REPAIR/TOLERATION 2) AT3G04880 (DRT102) mRNA, complete cds Length = 1082 Score = 69.9 bits (35), Expect = 6e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 246 gtttccaggtcttcatctaggaatatgtcccagtgcccatcccaccggatgaagaactca 305 ||||| |||||||| || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 916 gtttcgaggtcttcgtcaaggaatatgtcccaatggccatcccaagtgatgaagaactca 857 Query: 306 gtgtctt 312 ||||||| Sbjct: 856 gtgtctt 850
>gb|AY143862.1| Arabidopsis thaliana At3g04880/T9J14_17 mRNA, complete cds Length = 933 Score = 69.9 bits (35), Expect = 6e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 246 gtttccaggtcttcatctaggaatatgtcccagtgcccatcccaccggatgaagaactca 305 ||||| |||||||| || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 902 gtttcgaggtcttcgtcaaggaatatgtcccaatggccatcccaagtgatgaagaactca 843 Query: 306 gtgtctt 312 ||||||| Sbjct: 842 gtgtctt 836
>gb|AY052206.1| Arabidopsis thaliana AT3g04880/T9J14_17 mRNA, complete cds Length = 1082 Score = 69.9 bits (35), Expect = 6e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 246 gtttccaggtcttcatctaggaatatgtcccagtgcccatcccaccggatgaagaactca 305 ||||| |||||||| || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 916 gtttcgaggtcttcgtcaaggaatatgtcccaatggccatcccaagtgatgaagaactca 857 Query: 306 gtgtctt 312 ||||||| Sbjct: 856 gtgtctt 850
>emb|BX825011.1|CNS0A7TT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH8ZA05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1068 Score = 69.9 bits (35), Expect = 6e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 246 gtttccaggtcttcatctaggaatatgtcccagtgcccatcccaccggatgaagaactca 305 ||||| |||||||| || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 893 gtttcgaggtcttcgtcaaggaatatgtcccaatggccatcccaagtgatgaagaactca 834 Query: 306 gtgtctt 312 ||||||| Sbjct: 833 gtgtctt 827
>emb|BX823693.1|CNS0A6M1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS68ZC02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1054 Score = 69.9 bits (35), Expect = 6e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 246 gtttccaggtcttcatctaggaatatgtcccagtgcccatcccaccggatgaagaactca 305 ||||| |||||||| || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 895 gtttcgaggtcttcgtcaaggaatatgtcccaatggccatcccaagtgatgaagaactca 836 Query: 306 gtgtctt 312 ||||||| Sbjct: 835 gtgtctt 829
>gb|AC009465.7|AC009465 Arabidopsis thaliana chromosome 3 BAC T9J14 genomic sequence, complete sequence Length = 93234 Score = 69.9 bits (35), Expect = 6e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 246 gtttccaggtcttcatctaggaatatgtcccagtgcccatcccaccggatgaagaactca 305 ||||| |||||||| || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 58483 gtttcgaggtcttcgtcaaggaatatgtcccaatggccatcccaagtgatgaagaactca 58424 Query: 306 gtgtctt 312 ||||||| Sbjct: 58423 gtgtctt 58417
>gb|AF121947.1|AF121947 Arabidopsis thaliana zeta-carotene desaturase precursor, gene, complete cds Length = 4400 Score = 69.9 bits (35), Expect = 6e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 246 gtttccaggtcttcatctaggaatatgtcccagtgcccatcccaccggatgaagaactca 305 ||||| |||||||| || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 4070 gtttcgaggtcttcgtcaaggaatatgtcccaatggccatcccaagtgatgaagaactca 4129 Query: 306 gtgtctt 312 ||||||| Sbjct: 4130 gtgtctt 4136
>gb|L11368.1|ATHUNIDB Arabidopsis thaliana unidentified mRNA sequence, complete cds Length = 946 Score = 69.9 bits (35), Expect = 6e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 246 gtttccaggtcttcatctaggaatatgtcccagtgcccatcccaccggatgaagaactca 305 ||||| |||||||| || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 757 gtttcgaggtcttcgtcaaggaatatgtcccaatggccatcccaagtgatgaagaactca 698 Query: 306 gtgtctt 312 ||||||| Sbjct: 697 gtgtctt 691
>gb|AC009736.10| Drosophila melanogaster clone BACR10A04, complete sequence Length = 165489 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Plus Query: 99 acagcaccagccaccagcaacaa 121 ||||||||||||||||||||||| Sbjct: 73318 acagcaccagccaccagcaacaa 73340
>gb|AE003722.4| Drosophila melanogaster chromosome 3R, section 60 of 118 of the complete sequence Length = 221164 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Plus Query: 99 acagcaccagccaccagcaacaa 121 ||||||||||||||||||||||| Sbjct: 140556 acagcaccagccaccagcaacaa 140578
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 237 ttgcgtgcggtttccaggtctt 258 |||||||||||||||||||||| Sbjct: 2003105 ttgcgtgcggtttccaggtctt 2003126
>emb|AJ012318.1|GMA012318 Glycine max cctd gene Length = 1602 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 202 caccgtcgacgacaccgagctc 223 |||||||||||||||||||||| Sbjct: 627 caccgtcgacgacaccgagctc 648
>emb|AJ583803.1| Glycine max cctd gene for cytosolic chaperonin delta-subunit, cultivar Cuc Vang Length = 1602 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 202 caccgtcgacgacaccgagctc 223 |||||||||||||||||||||| Sbjct: 627 caccgtcgacgacaccgagctc 648
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 200 gtcaccgtcgacgacaccgagc 221 |||||||||||||||||||||| Sbjct: 4568273 gtcaccgtcgacgacaccgagc 4568294
>gb|DQ002408.1| Zea mays gypsy retrotransposon huck, and copia retrotransposon ji, complete sequence; and helitron Mo17_14594, complete sequence Length = 57607 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 46 agcatccagcaaacatacatatctg 70 |||| |||||||||||||||||||| Sbjct: 52653 agcagccagcaaacatacatatctg 52629
>gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retrotransposon grande1, xilon1 retrotransposon, helitron B73_14578, gypsy retrotransposon huck1 and ruda retrotransposon, complete sequence Length = 152384 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 46 agcatccagcaaacatacatatctg 70 |||| |||||||||||||||||||| Sbjct: 99410 agcagccagcaaacatacatatctg 99386
>emb|CT009748.6| Mouse DNA sequence from clone RP23-120N6 on chromosome 9, complete sequence Length = 235839 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 tagcaaagcatccagcaaaca 60 ||||||||||||||||||||| Sbjct: 226432 tagcaaagcatccagcaaaca 226412
>emb|AL837505.21| Mouse DNA sequence from clone RP23-181N6 on chromosome 4, complete sequence Length = 186045 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 tagaaccttcagaagcctcct 194 ||||||||||||||||||||| Sbjct: 82195 tagaaccttcagaagcctcct 82175
>gb|AC117530.2| Homo sapiens chromosome 5 clone RP11-294P1, complete sequence Length = 172442 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 accattttattccaaagagca 39 ||||||||||||||||||||| Sbjct: 2223 accattttattccaaagagca 2243
>gb|AC010411.7| Homo sapiens chromosome 5 clone CTD-2165P17, complete sequence Length = 177807 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 accattttattccaaagagca 39 ||||||||||||||||||||| Sbjct: 101773 accattttattccaaagagca 101753
>gb|AC008856.6|AC008856 Homo sapiens chromosome 5 clone CTD-2178N20, complete sequence Length = 154229 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 accattttattccaaagagca 39 ||||||||||||||||||||| Sbjct: 119323 accattttattccaaagagca 119303
>emb|BX571975.7| Zebrafish DNA sequence from clone DKEY-77F3 in linkage group 18, complete sequence Length = 187272 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 atcaccattttattccaaaga 36 ||||||||||||||||||||| Sbjct: 121038 atcaccattttattccaaaga 121018
>emb|BX548070.5| Zebrafish DNA sequence from clone CH211-245P7 in linkage group 18, complete sequence Length = 173372 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 atcaccattttattccaaaga 36 ||||||||||||||||||||| Sbjct: 120337 atcaccattttattccaaaga 120317
>gb|AF005267.1| Saccharomyces cerevisiae Yeb3p (YEB3) mRNA, complete cds Length = 2418 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 accaatacaggcacagcacc 106 |||||||||||||||||||| Sbjct: 858 accaatacaggcacagcacc 839
>gb|AC096658.1| Homo sapiens BAC clone RP11-29C24 from 7, complete sequence Length = 77142 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 atacatatctgaaaagatgt 79 |||||||||||||||||||| Sbjct: 48250 atacatatctgaaaagatgt 48231
>gb|AC142307.1| Pan troglodytes BAC clone RP43-131H12 from 7, complete sequence Length = 158646 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 atacatatctgaaaagatgt 79 |||||||||||||||||||| Sbjct: 2889 atacatatctgaaaagatgt 2908
>gb|AC144435.2| Homo sapiens fosmid clone XXFOS-801248E3 from 7, complete sequence Length = 43653 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 atacatatctgaaaagatgt 79 |||||||||||||||||||| Sbjct: 35956 atacatatctgaaaagatgt 35975
>emb|AL669838.22| Mouse DNA sequence from clone RP23-324A4 on chromosome 11 Contains the Adcy1 gene for adenylate cyclase 1, a novel gene and a CpG island, complete sequence Length = 189132 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 caatacaggcacagcaccagccac 112 ||||| |||||||||||||||||| Sbjct: 73141 caataaaggcacagcaccagccac 73118
>gb|AC087639.7| Homo sapiens chromosome 15, clone RP11-696L21, complete sequence Length = 190015 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 241 gtgcggtttccaggtcttcatcta 264 |||| ||||||||||||||||||| Sbjct: 52314 gtgcagtttccaggtcttcatcta 52337
>gb|AC121569.4| Mus musculus BAC clone RP23-228C13 from chromosome 12, complete sequence Length = 171710 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 gaactctgcattgatggagaaaaa 157 |||||||| ||||||||||||||| Sbjct: 86265 gaactctggattgatggagaaaaa 86242
>gb|AC079347.6| Homo sapiens BAC clone RP11-352J13 from 2, complete sequence Length = 96559 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 gagcatagcaaagcatccag 54 |||||||||||||||||||| Sbjct: 80971 gagcatagcaaagcatccag 80952
>gb|U18530.1|SCE9871 Saccharomyces cerevisiae chromosome V cosmids 9871, 8199, 9867, 9495 and lambda clones 6693 and 5898 Length = 62643 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 accaatacaggcacagcacc 106 |||||||||||||||||||| Sbjct: 39871 accaatacaggcacagcacc 39852
>dbj|BS000207.2| Pan troglodytes chromosome 22 clone:PTB-155J22, map 22, complete sequences Length = 193476 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 gaactctgcattgatggagaaaaa 157 ||||||||||||| |||||||||| Sbjct: 188851 gaactctgcattgttggagaaaaa 188828
>dbj|BS000208.1| Pan troglodytes chromosome 22 clone:RP43-017N02, map 22, complete sequences Length = 173249 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 gaactctgcattgatggagaaaaa 157 ||||||||||||| |||||||||| Sbjct: 27579 gaactctgcattgttggagaaaaa 27556
>gb|U51561.1|U51561 Homo sapiens cosmid clone N79E2 from 22q12, complete sequence Length = 39683 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aagaaccaatacaggcacag 102 |||||||||||||||||||| Sbjct: 37174 aagaaccaatacaggcacag 37155
>dbj|AP001696.1| Homo sapiens genomic DNA, chromosome 21q, section 40/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 gaactctgcattgatggagaaaaa 157 ||||||||||||| |||||||||| Sbjct: 50389 gaactctgcattgttggagaaaaa 50366
>gb|AC124991.14| Mus musculus chromosome 12, clone RP23-138M19, complete sequence Length = 179111 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 gaactctgcattgatggagaaaaa 157 |||||||| ||||||||||||||| Sbjct: 83946 gaactctggattgatggagaaaaa 83923
>dbj|AB216702.1| Equus caballus DNA, microsatellite TKY2759 Length = 518 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tcagaagcctcctcacttgt 201 |||||||||||||||||||| Sbjct: 271 tcagaagcctcctcacttgt 290
>dbj|AP001595.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1622E1, APP-D21S292 region, complete sequence Length = 154686 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 gaactctgcattgatggagaaaaa 157 ||||||||||||| |||||||||| Sbjct: 96278 gaactctgcattgttggagaaaaa 96255 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,132,066 Number of Sequences: 3902068 Number of extensions: 3132066 Number of successful extensions: 59917 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59791 Number of HSP's gapped (non-prelim): 126 length of query: 374 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 352 effective length of database: 17,147,199,772 effective search space: 6035814319744 effective search space used: 6035814319744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)