ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast59e03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009109.1| Triticum aestivum clone wl1.pk0003.h12:fis, full insert mRNA sequence Length = 1084 Score = 103 bits (52), Expect = 4e-19 Identities = 119/140 (85%), Gaps = 6/140 (4%) Strand = Plus / Minus Query: 178 caaactaaactagaggcacatcataaagctcacaagcatggctgccgcagcagtttgttt 237 ||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| Sbjct: 827 caaactaaactagagacacatcataa-gctcacaagcatggctgccgcagcaatttgt-- 771 Query: 238 cgcttcgctagtaaagacagcgacttccttccccaaccacacagtggctcggctcacatc 297 ||||| |||||||||| |||||| ||||| | |||| |||| |||| ||||||||| Sbjct: 770 ---ttcgccagtaaagacaacgactttcttcctcgaccagacagcggcttagctcacatc 714 Query: 298 atctacctcctcacgggagg 317 |||| ||||| || ||||| Sbjct: 713 ctctatctcctaacaggagg 694 Score = 77.8 bits (39), Expect = 2e-11 Identities = 95/109 (87%), Gaps = 6/109 (5%) Strand = Plus / Minus Query: 56 tttacagctaacaacagcaatacatcat-catacagagagaaaatcggttcgcataaaca 114 ||||| ||||||| |||||||||||||| ||| || |||||| |||||| || |||| Sbjct: 885 tttaccgctaacagcagcaatacatcatacat-catagagaa---cggttcacagaaact 830 Query: 115 accaaactaaactagaggcacatcataaagctcacaagcatggctgccg 163 | ||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct: 829 aacaaactaaactagagacacatcat-aagctcacaagcatggctgccg 782
>gb|AY106245.1| Zea mays PCO068141 mRNA sequence Length = 730 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 298 atctacctcctcacgggaggcgcgc 322 |||||||||||||| |||||||||| Sbjct: 494 atctacctcctcacaggaggcgcgc 470
>gb|AC005850.1| Arabidopsis thaliana chromosome I BAC T25B24 genomic sequence, complete sequence Length = 84432 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 aaccaaactaaactagaggca 195 ||||||||||||||||||||| Sbjct: 28943 aaccaaactaaactagaggca 28963 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 aaccaaactaaactagaggca 134 ||||||||||||||||||||| Sbjct: 28943 aaccaaactaaactagaggca 28963
>ref|NM_101582.2| Arabidopsis thaliana unknown protein AT1G17210 mRNA, complete cds Length = 3348 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tatccattgcaatgacagag 29 |||||||||||||||||||| Sbjct: 1885 tatccattgcaatgacagag 1866
>gb|AC146424.3| Pan troglodytes BAC clone RP43-26H22 from 7, complete sequence Length = 195194 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 263 tccttccccaaccacacagtggct 286 ||||||||||||| |||||||||| Sbjct: 180527 tccttccccaacctcacagtggct 180504
>gb|AC146279.2| Pan troglodytes BAC clone RP43-29J18 from 7, complete sequence Length = 188896 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 tccttccccaaccacacagtggct 286 ||||||||||||| |||||||||| Sbjct: 108447 tccttccccaacctcacagtggct 108470
>gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23 genomic sequence, complete sequence Length = 114935 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tatccattgcaatgacagag 29 |||||||||||||||||||| Sbjct: 41662 tatccattgcaatgacagag 41643
>gb|AC004535.1| Homo sapiens PAC clone RP4-698G21 from 7, complete sequence Length = 109469 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 tccttccccaaccacacagtggct 286 ||||||||||||| |||||||||| Sbjct: 75766 tccttccccaacctcacagtggct 75789
>emb|BX293997.14| Zebrafish DNA sequence from clone DKEY-15L7 in linkage group 6, complete sequence Length = 233655 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 54 tgtttacagctaacaacagcaata 77 ||||||||||| |||||||||||| Sbjct: 154907 tgtttacagcttacaacagcaata 154884
>emb|AL133174.15| Human DNA sequence from clone RP3-470L14 on chromosome 20 Contains the CSE1L gene for chromosome segregation 1 (yeast homolog)-like protein, the STAU gene for staufen RNA-binding protein (Drosophila), ARPC3 (actin related protein 2/3 complex,subunit 3, 21KDa) pseudogene and a CpG island, complete sequence Length = 113836 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 ccttccccaaccacacagtg 283 |||||||||||||||||||| Sbjct: 22702 ccttccccaaccacacagtg 22683 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,212,813 Number of Sequences: 3902068 Number of extensions: 3212813 Number of successful extensions: 56102 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56082 Number of HSP's gapped (non-prelim): 18 length of query: 359 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 337 effective length of database: 17,147,199,772 effective search space: 5778606323164 effective search space used: 5778606323164 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
