ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast59d02 |
|---|---|
| Clone Library Name | barley_pub |
>GP175_CHICK (Q5ZII3) Integral membrane protein GPR175| Length = 364 Score = 30.8 bits (68), Expect = 1.4 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = +3 Query: 24 NTTRSNSHKTCLELATMSGPTLTDNINKSNLT*P 125 N TRS + T LE T PT T IN +N+T P Sbjct: 4 NITRSTALVTALENVTTLSPTTTQAINDTNITVP 37
>DLL3_RAT (O88671) Delta-like protein 3 precursor (Drosophila Delta homolog| 3) Length = 589 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -1 Query: 321 CWCDGPASCECNRCALGGRRRILLGFSPGSSTSSCPR 211 C GP C+ N CA GG +PGS +CPR Sbjct: 272 CLLPGPGPCDGNPCANGGS----CSETPGSFECACPR 304
>PCDGE_HUMAN (Q9Y5G2) Protocadherin gamma B2 precursor (PCDH-gamma-B2)| Length = 931 Score = 29.3 bits (64), Expect = 4.1 Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 5/131 (3%) Frame = +3 Query: 42 SHKTCLELATMSGPTLTDNINKSNLT*PAATITYHNVTYYQKYSHHNANVLGKTDTIL-- 215 S+ C+ A+ S T + +N + PA + N ++ Q +H A V +DTIL Sbjct: 751 SYNLCV--ASQSAKTEFNFLNITPELVPAQDLVCDNASWEQNTNHGAAGVPFASDTILKQ 808 Query: 216 ---GTSWLSCPAKNPRGSSSSLPMHTDYTHTRPVHHTSIT*EIVKP*TSPNSDAEIDGLQ 386 T W A+ P S S T T PN+ + + LQ Sbjct: 809 APPNTDWRFSQAQRPGTSGSQNGDDTG--------------------TWPNNQFDTEMLQ 848 Query: 387 EIIHASAKVAA 419 +I ASA AA Sbjct: 849 AMILASASEAA 859
>SAHH_METMP (Q6LYR8) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 415 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = +2 Query: 194 RENRHHLGHELVELPGEKPKRILLLPPNAHRLHSHEAGPSHQHYLRDSK 340 +EN+ L +E+ E+P E+ +I LL ++ E P + YL D K Sbjct: 364 KENKGKLENEVYEIPYEQDFKIALLKLHSMGADIDELSPEQRKYLSDWK 412
>UTY_HUMAN (O14607) Ubiquitously transcribed Y chromosome tetratricopeptide| repeat protein (Ubiquitously transcribed TPR protein on the Y chromosome) Length = 1347 Score = 28.9 bits (63), Expect = 5.4 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = +3 Query: 183 ANVLGKTDTILGTSWLSCPAKNPRGSSSSLPMHTDYTHTRPVHHTSIT*EIVKP 344 + +LG TDTIL S +C A + S+ ++P THT P +HT + +P Sbjct: 531 SKILGSTDTILLGS--NCIAGSE--SNGNVPYLQQNTHTLPHNHTDLNSSTEEP 580
>UL70_HCMVA (P17149) Probable primase (DNA replication protein UL70)| Length = 946 Score = 28.9 bits (63), Expect = 5.4 Identities = 16/55 (29%), Positives = 30/55 (54%) Frame = +2 Query: 206 HHLGHELVELPGEKPKRILLLPPNAHRLHSHEAGPSHQHYLRDSKTLNLSQFRRR 370 HH H+L LP P R++L + + PS + ++++LN++++RRR Sbjct: 749 HHPPHDLPALPLSPPPRVILSVRD-------KICPSTEANFIETRSLNVTRYRRR 796
>PDE3A_MOUSE (Q9Z0X4) cGMP-inhibited 3',5'-cyclic phosphodiesterase A (EC| 3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase A) (CGI-PDE A) Length = 1141 Score = 28.9 bits (63), Expect = 5.4 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 10/97 (10%) Frame = +1 Query: 160 IKNTLTITLMCSGKQT--PSWARAG*AARRKTQEDPPPPSQCTP--------ITLTRGRS 309 + +T T T +G T P+ R +A K E P PS P TLT+ RS Sbjct: 434 VSSTWTTTTSATGLPTLEPAPVRRDRSASIKPHE-APSPSAVNPDSWNAPGLTTLTKSRS 492 Query: 310 ITPAXXXXXXXXXXXXIQTQKSTVCRKSSMPRPKSQP 420 T + Q + + + S +P P S P Sbjct: 493 FTSSYAVSAANHVKAKKQNRPGGLAKISPVPSPSSSP 529
>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2330 Score = 28.9 bits (63), Expect = 5.4 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -2 Query: 281 VHWEGGGGSSWVFRRAAQPARAQDG 207 +HWE G SSW F + AR G Sbjct: 927 LHWEANGSSSWGFNASVGSARCGSG 951
>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2386 Score = 28.9 bits (63), Expect = 5.4 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -2 Query: 281 VHWEGGGGSSWVFRRAAQPARAQDG 207 +HWE G SSW F + AR G Sbjct: 927 LHWEANGSSSWGFNASVGSARCGSG 951
>PCDGE_PANTR (Q5DRA9) Protocadherin gamma B2 precursor (PCDH-gamma-B2)| Length = 931 Score = 28.9 bits (63), Expect = 5.4 Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 5/131 (3%) Frame = +3 Query: 42 SHKTCLELATMSGPTLTDNINKSNLT*PAATITYHNVTYYQKYSHHNANVLGKTDTIL-- 215 S+ C+ A+ S T + +N + PA + N ++ Q +H A V +DTIL Sbjct: 751 SYNLCV--ASQSAKTEFNFLNITPELIPAQDLLCDNASWEQNTNHGAAGVPFASDTILKQ 808 Query: 216 ---GTSWLSCPAKNPRGSSSSLPMHTDYTHTRPVHHTSIT*EIVKP*TSPNSDAEIDGLQ 386 T W A+ P S S T T PN+ + + LQ Sbjct: 809 APPNTDWRFSQAQRPGTSGSQNGDDTG--------------------TWPNNQFDTEMLQ 848 Query: 387 EIIHASAKVAA 419 +I ASA AA Sbjct: 849 AMILASASEAA 859
>AT2A1_CHICK (P13585) Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (EC| 3.6.3.8) (Calcium pump 1) (SERCA1) (SR Ca(2+)-ATPase 1) (Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform) (Endoplasmic reticulum cla Length = 994 Score = 28.5 bits (62), Expect = 7.1 Identities = 9/22 (40%), Positives = 16/22 (72%) Frame = +3 Query: 132 TITYHNVTYYQKYSHHNANVLG 197 ++TYH +T++ + +HHNA G Sbjct: 864 SLTYHQLTHFMQCTHHNAEFEG 885
>CHSD_EMENI (P78611) Chitin synthase D (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase D) (Class-V chitin synthase D) Length = 1184 Score = 28.5 bits (62), Expect = 7.1 Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 10/80 (12%) Frame = +2 Query: 194 RENRHHLGH----------ELVELPGEKPKRILLLPPNAHRLHSHEAGPSHQHYLRDSKT 343 R +RHH H E E G + KR L+ P PSH +YL KT Sbjct: 43 RHHRHHRSHSSRHQHDIDEERAEEGGIRRKRSLVKPERGRM------DPSHPNYLYRQKT 96 Query: 344 LNLSQFRRRNRRFAGNHPCL 403 N+ + GN P + Sbjct: 97 QNMPTY----NPMTGNEPLI 112
>PACS1_MOUSE (Q8K212) Phosphofurin acidic cluster sorting protein 1 (PACS-1)| Length = 961 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/62 (22%), Positives = 22/62 (35%) Frame = +1 Query: 238 RRKTQEDPPPPSQCTPITLTRGRSITPAXXXXXXXXXXXXIQTQKSTVCRKSSMPRPKSQ 417 +++ Q+ PP P Q TP L + S + + T + S P Sbjct: 30 QQQPQQQPPQPQQPTPPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGPG 89 Query: 418 PG 423 PG Sbjct: 90 PG 91
>PDE3A_RAT (Q62865) cGMP-inhibited 3',5'-cyclic phosphodiesterase A (EC| 3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase A) (CGI-PDE A) Length = 1141 Score = 28.5 bits (62), Expect = 7.1 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 10/97 (10%) Frame = +1 Query: 160 IKNTLTITLMCSGKQT--PSWARAG*AARRKTQEDPPPPSQCTP--------ITLTRGRS 309 + +T T T +G T P+ R +A K E P PS P +TLT+ RS Sbjct: 434 VSSTWTTTTSATGLPTLEPAPVRRDRSASIKPHE-APSPSAVNPDSWNAPVLMTLTKSRS 492 Query: 310 ITPAXXXXXXXXXXXXIQTQKSTVCRKSSMPRPKSQP 420 T + Q + + + S +P P S P Sbjct: 493 FTSSYAVSAANHVKAKKQNRPGGLDKISPVPSPSSSP 529
>IGSF8_HUMAN (Q969P0) Immunoglobulin superfamily member 8 precursor (CD81| partner 3) (Glu-Trp-Ile EWI motif containing protein 2) (EWI-2) (Keratinocytes-associated transmembrane protein 4) (KCT-4) (LIR-D1) (CD316 antigen) Length = 613 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +2 Query: 221 ELVELPGEKPKRILLLPPNAHRLHSHEAGPSHQ 319 EL PG P + L+ P +HRL H GP + Sbjct: 507 ELGVRPGGGPVSVELVGPRSHRLRLHSLGPEDE 539
>CHD3_HUMAN (Q12873) Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-)| (ATP-dependent helicase CHD3) (CHD-3) (Mi-2 autoantigen 240 kDa protein) (Mi2-alpha) (Zinc-finger helicase) (hZFH) Length = 2000 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 10/54 (18%) Frame = +3 Query: 141 YHNVTYYQKYSHHNANVLGKTD---------TILGTSWLSCPAKNP-RGSSSSL 272 YH +T Y+ +S ++ K + TILG W A NP +GS++++ Sbjct: 156 YHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAV 209
>UTY_PANTR (Q6B4Z3) Ubiquitously transcribed Y chromosome tetratricopeptide| repeat protein (Ubiquitously transcribed TPR protein on the Y chromosome) Length = 1079 Score = 28.1 bits (61), Expect = 9.2 Identities = 19/54 (35%), Positives = 28/54 (51%) Frame = +3 Query: 183 ANVLGKTDTILGTSWLSCPAKNPRGSSSSLPMHTDYTHTRPVHHTSIT*EIVKP 344 + +LG TDTIL S +C A + S+ ++P THT P HT + +P Sbjct: 531 SKILGSTDTILLGS--NCIAGSE--SNGNVPYLQQNTHTLPHSHTDLNSSTEEP 580
>CHD5_HUMAN (Q8TDI0) Chromodomain helicase-DNA-binding protein 5 (EC 3.6.1.-)| (ATP-dependent helicase CHD5) (CHD-5) Length = 1954 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 10/53 (18%) Frame = +3 Query: 141 YHNVTYYQKYSHHNANVLGKTD---------TILGTSWLSCPAKNP-RGSSSS 269 YH +T Y+ +S ++ K + T+LG W A NP +GSS++ Sbjct: 155 YHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGSSAA 207
>PPCK_WIGBR (Q8D1X9) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 541 Score = 28.1 bits (61), Expect = 9.2 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +2 Query: 308 PSHQHYLRDSKTLNLSQFRRRNRRFAGNHP 397 P ++Y+RD KT N+ + N + NHP Sbjct: 66 PKDKYYVRDEKTKNIIWWSDDNNHKSNNHP 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,089,753 Number of Sequences: 219361 Number of extensions: 1333502 Number of successful extensions: 4202 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4045 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4194 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
