ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast59d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009261.1| Triticum aestivum clone wlk4.pk0018.f9:fis, full ... 270 3e-69
2gb|AY109326.1| Zea mays CL1256_1 mRNA sequence 90 7e-15
3gb|BT016869.1| Zea mays clone Contig702 mRNA sequence 84 4e-13
4gb|AC144926.6| Mus musculus chromosome 8, clone RP23-8E24, compl... 42 1.5
5gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, nea... 42 1.5
6gb|AC005275.1| Arabidopsis thaliana BAC F4C21 from chromosome IV... 42 1.5
7gb|AC092189.3| Drosophila melanogaster clone BACR34M11, complete... 42 1.5
8ref|NM_010236.1| Mus musculus folylpolyglutamyl synthetase (Fpgs... 42 1.5
9ref|NM_001031844.1| Danio rerio zgc:113100 (zgc:113100), mRNA 42 1.5
10gb|BC090442.1| Danio rerio zgc:113100, mRNA (cDNA clone MGC:1131... 42 1.5
11gb|BC005484.1| Mus musculus folylpolyglutamyl synthetase, mRNA (... 42 1.5
12gb|AC099710.8| Mus musculus, clone RP23-366C6, complete sequence 42 1.5
13ref|XM_765666.1| Giardia lamblia ATCC 50803 sphingomyelinase-lik... 42 1.5
14gb|AC146253.3| Pan troglodytes BAC clone CH251-118B18 from Y, co... 42 1.5
15emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, c... 42 1.5
16gb|AC079111.7| Homo sapiens chromosome 17, clone RP11-367G9, com... 42 1.5
17dbj|BS000562.1| Pan troglodytes chromosome Y clone:PTB-575P16, c... 42 1.5
18dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 42 1.5
19gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 1.5
20dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 42 1.5
21gb|AC083801.20| Homo sapiens 3 BAC RP11-646E18 (Roswell Park Can... 42 1.5
22dbj|AK157040.1| Mus musculus activated spleen cDNA, RIKEN full-l... 42 1.5
23ref|XM_693377.1| PREDICTED: Danio rerio similar to zinc finger p... 42 1.5
24gb|AC026330.12| Homo sapiens 3 BAC RP11-414D23 (Roswell Park Can... 42 1.5
25dbj|AK041952.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 42 1.5
26emb|BX000702.11| Zebrafish DNA sequence from clone CH211-160D19 ... 42 1.5
27gb|AC114760.3| Homo sapiens BAC clone RP11-347P5 from 2, complet... 42 1.5
28gb|AC084439.1|AC084439 Caenorhabditis briggsae cosmid CB005A09, ... 42 1.5
29gb|AC007876.2|AC007876 Homo sapiens BAC clone RP11-65G9 from Y, ... 42 1.5
30gb|AC002531.1|AC002531 Homo sapiens chromosome Y, clone 486_O_8,... 42 1.5
31gb|AE003583.3| Drosophila melanogaster chromosome 2L, section 8 ... 42 1.5
32gb|U33557.1|MMU33557 Mus musculus folylpolyglutamate synthetase ... 42 1.5
33gb|U32197.1|MMU32197 Mus musculus folylpolyglutamate synthetase ... 42 1.5
34gb|U63852.1|DMU63852 Drosophila melanogaster decapentaplegic pro... 42 1.5
35gb|AC004369.1|AC004369 Drosophila melanogaster DNA sequence (P1 ... 42 1.5
36emb|AL772271.11| Mouse DNA sequence from clone RP23-17P12 on chr... 42 1.5
37emb|AL671908.8| Mouse DNA sequence from clone RP23-307G22 on chr... 42 1.5
38gb|AY061885.1| Mus musculus ubiquitin ligase E3 alpha-II mRNA, p... 40 5.8
39emb|CR940310.6| M.truncatula DNA sequence from clone MTH2-5D8 on... 40 5.8
40gb|AC122235.5| Mus musculus BAC clone RP23-139H6 from chromosome... 40 5.8
41gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 5.8
42gb|AY280958.1| Mus musculus ubiquitin ligase UBR2 (Ubr2) mRNA, c... 40 5.8
43gb|AE014818.1| Plasmodium falciparum 3D7 chromosome 14 section 3... 40 5.8
44emb|AL354763.17| Human DNA sequence from clone RP11-357L1 on chr... 40 5.8
45emb|BX908814.1| Tetraodon nigroviridis 40 5.8
46gb|AC156939.5| Mus musculus BAC clone RP23-136O24 from chromosom... 40 5.8
47gb|AC027761.6| Homo sapiens chromosome 8, clone RP11-655E7, comp... 40 5.8
48dbj|AK143202.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 5.8
49dbj|AK147445.1| Mus musculus cDNA, RIKEN full-length enriched li... 40 5.8
50gb|AC022313.5| Homo sapiens BAC clone RP11-437G1 from 4, complet... 40 5.8
51gb|AC158999.2| Mus musculus BAC clone RP24-201N16 from chromosom... 40 5.8
52gb|AC018377.6|AC018377 Homo sapiens, clone RP11-4C16, complete s... 40 5.8
53gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 5.8
54gb|AC092635.2| Homo sapiens BAC clone RP11-342E23 from 2, comple... 40 5.8
55ref|NM_146078.2| Mus musculus ubiquitin protein ligase E3 compon... 40 5.8
56emb|BX005125.11| Zebrafish DNA sequence from clone CH211-127I16 ... 40 5.8
57dbj|AK122254.2| Mus musculus mRNA for mKIAA0349 protein 40 5.8
58gb|AC153873.5| Mus musculus 10 BAC RP23-87M12 (Roswell Park Canc... 40 5.8
59emb|CR925824.7| Zebrafish DNA sequence from clone DKEYP-66E4 in ... 40 5.8
60gb|AC155334.7| Mus musculus 6 BAC RP24-420O24 (Roswell Park Canc... 40 5.8
61gb|AC122547.11| Mus musculus chromosome 1, clone RP23-76P20, com... 40 5.8
62gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 40 5.8
63gb|AC119855.16| Mus musculus chromosome 3, clone RP23-243H19, co... 40 5.8
64gb|BC075642.1| Mus musculus ubiquitin protein ligase E3 componen... 40 5.8 
>gb|BT009261.1| Triticum aestivum clone wlk4.pk0018.f9:fis, full insert mRNA
           sequence
          Length = 1111

 Score =  270 bits (136), Expect = 3e-69
 Identities = 212/235 (90%), Gaps = 13/235 (5%)
 Strand = Plus / Minus

                                                                       
Query: 195 gggaaaacagacaccatcttgggcacgagctggttgagctgcccggcgaaaaacccaaga 254
           |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 876 gggaaaacagacaccatcttgggcacgagctgattgagctgcccggggaaaaacccaaga 817

                                                                       
Query: 255 ggatcctcctcctccctcccaatgcacaccgattacactcacacgaggccggtccatcac 314
           ||||     |||||||||||||||||||| ||||||||||||| |||||    |||||||
Sbjct: 816 ggat----atcctccctcccaatgcacacggattacactcacaggaggc----ccatcac 765

                                                                       
Query: 315 accagcattacttaagagatagtaaaaccttaaacctctcccaattcagacgcagaaatc 374
           ||||||||||||||| ||||    ||||||||||||||||  |||||| |||||||||||
Sbjct: 764 accagcattacttaa-agat----aaaccttaaacctctcttaattcacacgcagaaatc 710

                                                                  
Query: 375 gacggtttgcaggaaatcatccatgcctcggccaaagtcgcagccgggcatctcc 429
           ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 709 gacggtttgcaggaaatcatccatgccccggccaaagtcgcagccaggcatctcc 655



 Score =  254 bits (128), Expect = 2e-64
 Identities = 165/175 (94%), Gaps = 3/175 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    gcgaacttatttttctttttcata-ataccactagaagcaacagccacaagacttgtctt 59
            |||||||||||||||||||||||  |||| ||||| ||||||||||||||||||||||||
Sbjct: 1089 gcgaacttatttttctttttcattcatactactaggagcaacagccacaagacttgtctt 1030

                                                                        
Query: 60   gagctagctacaatgtctggaccaacattgacagataacataaacaagagcaacttaaca 119
            |||| ||||||||||||||||||||||||||||| ||||||||  ||||| ||| |||||
Sbjct: 1029 gagccagctacaatgtctggaccaacattgacaggtaacataa--aagaggaacataaca 972

                                                                   
Query: 120  taaccagcagctactataacttatcacaatgtaacctactatcaaaaatactctc 174
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  taaccagcagctactataacttatcacaatgtaacctactatcaaaaatactctc 917
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>gb|AY109326.1| Zea mays CL1256_1 mRNA sequence
          Length = 2360

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 357 aattcagacgcagaaatcgacggtttgcaggaaatcatccatgcctcggccaaagtcgca 416
           |||||| ||||||||||| ||||||||||||||||| |||||||| ||||| | ||||||
Sbjct: 340 aattcacacgcagaaatcaacggtttgcaggaaatcgtccatgccgcggccgaggtcgca 281

                        
Query: 417 gccgggcatctcc 429
           ||| |||||||||
Sbjct: 280 gccaggcatctcc 268
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>gb|BT016869.1| Zea mays clone Contig702 mRNA sequence
          Length = 1808

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                       
Query: 356 caattcagacgcagaaatcgacggtttgcaggaaatcatccatgcctcggccaaagtcgc 415
           ||||||| ||||| ||||| |||||||||||||| || |||||||| ||||| | |||||
Sbjct: 374 caattcacacgcaaaaatcaacggtttgcaggaagtcgtccatgccgcggccgaggtcgc 433

                         
Query: 416 agccgggcatctcc 429
           ||||||||||||||
Sbjct: 434 agccgggcatctcc 447
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>gb|AC144926.6| Mus musculus chromosome 8, clone RP23-8E24, complete sequence
          Length = 214694

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 99     ataaacaagagcaacttaaca 119
              |||||||||||||||||||||
Sbjct: 129520 ataaacaagagcaacttaaca 129540
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>gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, near 17 cM, complete
             sequence
          Length = 98913

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     aacttatttttctttttcata 24
             |||||||||||||||||||||
Sbjct: 10386 aacttatttttctttttcata 10406
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>gb|AC005275.1| Arabidopsis thaliana BAC F4C21 from chromosome IV, top arm, near 17
            cM, complete sequence
          Length = 136335

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 4    aacttatttttctttttcata 24
            |||||||||||||||||||||
Sbjct: 5730 aacttatttttctttttcata 5710
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>gb|AC092189.3| Drosophila melanogaster clone BACR34M11, complete sequence
          Length = 168540

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 95    taacataaacaagagcaacttaaca 119
             |||||||||||||||||| ||||||
Sbjct: 74247 taacataaacaagagcaatttaaca 74223
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>ref|NM_010236.1| Mus musculus folylpolyglutamyl synthetase (Fpgs), mRNA
          Length = 2216

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 259  cctcctcctccctcccaatgc 279
            |||||||||||||||||||||
Sbjct: 2075 cctcctcctccctcccaatgc 2095
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>ref|NM_001031844.1| Danio rerio zgc:113100 (zgc:113100), mRNA
          Length = 2921

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 6   cttatttttctttttcataatacca 30
           ||||||||||||||||| |||||||
Sbjct: 396 cttatttttctttttcaaaatacca 372
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>gb|BC090442.1| Danio rerio zgc:113100, mRNA (cDNA clone MGC:113100 IMAGE:7139349),
           complete cds
          Length = 2945

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 6   cttatttttctttttcataatacca 30
           ||||||||||||||||| |||||||
Sbjct: 396 cttatttttctttttcaaaatacca 372
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>gb|BC005484.1| Mus musculus folylpolyglutamyl synthetase, mRNA (cDNA clone MGC:7296
            IMAGE:3485401), complete cds
          Length = 2215

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 259  cctcctcctccctcccaatgc 279
            |||||||||||||||||||||
Sbjct: 2065 cctcctcctccctcccaatgc 2085
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>gb|AC099710.8| Mus musculus, clone RP23-366C6, complete sequence
          Length = 225122

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 8      tatttttctttttcataatac 28
              |||||||||||||||||||||
Sbjct: 166522 tatttttctttttcataatac 166542
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>ref|XM_765666.1| Giardia lamblia ATCC 50803 sphingomyelinase-like phosphodiesterase
           (GLP_609_52230_50911) partial mRNA
          Length = 1320

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 248 cccaagaggatcctcctcctccctc 272
           ||||||||||||||| |||||||||
Sbjct: 597 cccaagaggatcctcttcctccctc 573
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>gb|AC146253.3| Pan troglodytes BAC clone CH251-118B18 from Y, complete sequence
          Length = 153727

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    acttgtcttgagctagctaca 71
             |||||||||||||||||||||
Sbjct: 58281 acttgtcttgagctagctaca 58301
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>emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 8
          Length = 195429

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     aacttatttttctttttcata 24
             |||||||||||||||||||||
Sbjct: 24101 aacttatttttctttttcata 24081
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>gb|AC079111.7| Homo sapiens chromosome 17, clone RP11-367G9, complete sequence
          Length = 163410

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     ttatttttctttttcataata 27
             |||||||||||||||||||||
Sbjct: 38258 ttatttttctttttcataata 38278
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>dbj|BS000562.1| Pan troglodytes chromosome Y clone:PTB-575P16, complete sequences
          Length = 144349

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    acttgtcttgagctagctaca 71
             |||||||||||||||||||||
Sbjct: 50222 acttgtcttgagctagctaca 50202
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 370     aaatcgacggtttgcaggaaa 390
               |||||||||||||||||||||
Sbjct: 3127623 aaatcgacggtttgcaggaaa 3127643
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 51       acttgtcttgagctagctaca 71
                |||||||||||||||||||||
Sbjct: 17862889 acttgtcttgagctagctaca 17862869
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>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 255     ggatcctcctcctccctccca 275
               |||||||||||||||||||||
Sbjct: 1236088 ggatcctcctcctccctccca 1236068
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>gb|AC083801.20| Homo sapiens 3 BAC RP11-646E18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 159621

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     acttgtcttgagctagctaca 71
              |||||||||||||||||||||
Sbjct: 108188 acttgtcttgagctagctaca 108168
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>dbj|AK157040.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830114J03 product:folylpolyglutamyl
            synthetase, full insert sequence
          Length = 2223

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 259  cctcctcctccctcccaatgc 279
            |||||||||||||||||||||
Sbjct: 2083 cctcctcctccctcccaatgc 2103
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>ref|XM_693377.1| PREDICTED: Danio rerio similar to zinc finger protein 91 (HPF7,
           HTF10) (LOC569956), mRNA
          Length = 3963

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 6   cttatttttctttttcataatacca 30
           ||||||||||||||||| |||||||
Sbjct: 156 cttatttttctttttcaaaatacca 132
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>gb|AC026330.12| Homo sapiens 3 BAC RP11-414D23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 188205

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 89    gacagataacataaacaagag 109
             |||||||||||||||||||||
Sbjct: 13495 gacagataacataaacaagag 13475
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>dbj|AK041952.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630048J24 product:folylpolyglutamyl
            synthetase, full insert sequence
          Length = 2405

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 259  cctcctcctccctcccaatgc 279
            |||||||||||||||||||||
Sbjct: 2265 cctcctcctccctcccaatgc 2285
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>emb|BX000702.11| Zebrafish DNA sequence from clone CH211-160D19 in linkage group 15,
             complete sequence
          Length = 161904

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 6     cttatttttctttttcataatacca 30
             ||||||||||||||||| |||||||
Sbjct: 23343 cttatttttctttttcaaaatacca 23319
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>gb|AC114760.3| Homo sapiens BAC clone RP11-347P5 from 2, complete sequence
          Length = 120178

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    acttgtcttgagctagctaca 71
             |||||||||||||||||||||
Sbjct: 65735 acttgtcttgagctagctaca 65715
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>gb|AC084439.1|AC084439 Caenorhabditis briggsae cosmid CB005A09, complete sequence
          Length = 82884

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     ttatttttctttttcataata 27
             |||||||||||||||||||||
Sbjct: 35478 ttatttttctttttcataata 35458
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>gb|AC007876.2|AC007876 Homo sapiens BAC clone RP11-65G9 from Y, complete sequence
          Length = 164879

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 51     acttgtcttgagctagctaca 71
              |||||||||||||||||||||
Sbjct: 161888 acttgtcttgagctagctaca 161908
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>gb|AC002531.1|AC002531 Homo sapiens chromosome Y, clone 486_O_8, complete sequence
          Length = 197900

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    acttgtcttgagctagctaca 71
             |||||||||||||||||||||
Sbjct: 49741 acttgtcttgagctagctaca 49721
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>gb|AE003583.3| Drosophila melanogaster chromosome 2L, section 8 of 83 of the complete
              sequence
          Length = 303641

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 95     taacataaacaagagcaacttaaca 119
              |||||||||||||||||| ||||||
Sbjct: 257956 taacataaacaagagcaatttaaca 257932
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>gb|U33557.1|MMU33557 Mus musculus folylpolyglutamate synthetase precursor (Fpgs) mRNA,
            complete cds
          Length = 2247

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 259  cctcctcctccctcccaatgc 279
            |||||||||||||||||||||
Sbjct: 2099 cctcctcctccctcccaatgc 2119
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>gb|U32197.1|MMU32197 Mus musculus folylpolyglutamate synthetase mRNA, nuclear gene
            encoding cytosolic and mitochondrial protein, complete
            cds
          Length = 2216

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 259  cctcctcctccctcccaatgc 279
            |||||||||||||||||||||
Sbjct: 2075 cctcctcctccctcccaatgc 2095
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>gb|U63852.1|DMU63852 Drosophila melanogaster decapentaplegic protein (dpp) gene, disk
            region partial sequence, SLY1 homologous (Slh) gene,
            complete cds, and out at first protein (oaf) gene,
            partial cds
          Length = 13119

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 95   taacataaacaagagcaacttaaca 119
            |||||||||||||||||| ||||||
Sbjct: 8435 taacataaacaagagcaatttaaca 8411
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>gb|AC004369.1|AC004369 Drosophila melanogaster DNA sequence (P1 DS07066 (D70)), complete
            sequence
          Length = 77798

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 95   taacataaacaagagcaacttaaca 119
            |||||||||||||||||| ||||||
Sbjct: 8602 taacataaacaagagcaatttaaca 8626
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>emb|AL772271.11| Mouse DNA sequence from clone RP23-17P12 on chromosome 2, complete
             sequence
          Length = 204136

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 259   cctcctcctccctcccaatgc 279
             |||||||||||||||||||||
Sbjct: 97612 cctcctcctccctcccaatgc 97592
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>emb|AL671908.8| Mouse DNA sequence from clone RP23-307G22 on chromosome X, complete
             sequence
          Length = 205224

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 8     tatttttctttttcataatac 28
             |||||||||||||||||||||
Sbjct: 76510 tatttttctttttcataatac 76530
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>gb|AY061885.1| Mus musculus ubiquitin ligase E3 alpha-II mRNA, partial cds
          Length = 5265

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 caagaggatcctcctcctcc 269
           ||||||||||||||||||||
Sbjct: 541 caagaggatcctcctcctcc 522
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>emb|CR940310.6| M.truncatula DNA sequence from clone MTH2-5D8 on chromosome 3, complete
             sequence
          Length = 121689

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     gaacttatttttctttttca 22
             ||||||||||||||||||||
Sbjct: 19679 gaacttatttttctttttca 19698
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>gb|AC122235.5| Mus musculus BAC clone RP23-139H6 from chromosome 12, complete sequence
          Length = 190293

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   ctcctccctcccaatgcaca 282
             ||||||||||||||||||||
Sbjct: 32122 ctcctccctcccaatgcaca 32141
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>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of
              11 of the complete sequence
          Length = 613322

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    gctactataacttatcacaa 148
              ||||||||||||||||||||
Sbjct: 338431 gctactataacttatcacaa 338450
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>gb|AY280958.1| Mus musculus ubiquitin ligase UBR2 (Ubr2) mRNA, complete cds
          Length = 5438

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 caagaggatcctcctcctcc 269
           ||||||||||||||||||||
Sbjct: 566 caagaggatcctcctcctcc 547
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>gb|AE014818.1| Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete
             sequence
          Length = 252632

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     tatttttctttttcataata 27
             ||||||||||||||||||||
Sbjct: 44714 tatttttctttttcataata 44695
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>emb|AL354763.17| Human DNA sequence from clone RP11-357L1 on chromosome 13 Contains an
             ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G
             variant 1 (ATP6V1G1) pseudogene, complete sequence
          Length = 192963

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   gctactataacttatcacaa 148
             ||||||||||||||||||||
Sbjct: 65020 gctactataacttatcacaa 65039
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>emb|BX908814.1| Tetraodon nigroviridis
          Length = 120100

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   agaggatcctcctcctccct 271
             ||||||||||||||||||||
Sbjct: 47783 agaggatcctcctcctccct 47764
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>gb|AC156939.5| Mus musculus BAC clone RP23-136O24 from chromosome 12, complete sequence
          Length = 218561

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 263    ctcctccctcccaatgcaca 282
              ||||||||||||||||||||
Sbjct: 186448 ctcctccctcccaatgcaca 186467
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>gb|AC027761.6| Homo sapiens chromosome 8, clone RP11-655E7, complete sequence
          Length = 175657

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      tatttttctttttcataata 27
              ||||||||||||||||||||
Sbjct: 135808 tatttttctttttcataata 135827
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>dbj|AK143202.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
           library, clone:E130307M13 product:Ubiquitin ligase E3
           alpha-II (Fragment), full insert sequence
          Length = 5692

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 caagaggatcctcctcctcc 269
           ||||||||||||||||||||
Sbjct: 854 caagaggatcctcctcctcc 835
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>dbj|AK147445.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:M5C1043C02 product:Ubiquitin ligase E3 alpha-II
           (Fragment), full insert sequence
          Length = 7631

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 caagaggatcctcctcctcc 269
           ||||||||||||||||||||
Sbjct: 843 caagaggatcctcctcctcc 824
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>gb|AC022313.5| Homo sapiens BAC clone RP11-437G1 from 4, complete sequence
          Length = 183516

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 156    tactatcaaaaatactctcaccat 179
              ||||||||| ||||||||||||||
Sbjct: 125980 tactatcaataatactctcaccat 125957
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>gb|AC158999.2| Mus musculus BAC clone RP24-201N16 from chromosome 9, complete sequence
          Length = 169860

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     taccactagaagcaacagcc 45
              ||||||||||||||||||||
Sbjct: 115293 taccactagaagcaacagcc 115312
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>gb|AC018377.6|AC018377 Homo sapiens, clone RP11-4C16, complete sequence
          Length = 163644

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     tatttttctttttcataata 27
             ||||||||||||||||||||
Sbjct: 61309 tatttttctttttcataata 61328
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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 368    agaaatcgacggtttgcaggaaat 391
              |||||||| |||||||||||||||
Sbjct: 253206 agaaatcgccggtttgcaggaaat 253229
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>gb|AC092635.2| Homo sapiens BAC clone RP11-342E23 from 2, complete sequence
          Length = 125316

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 329    agagatagtaaaaccttaaa 348
              ||||||||||||||||||||
Sbjct: 119526 agagatagtaaaaccttaaa 119507
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>ref|NM_146078.2| Mus musculus ubiquitin protein ligase E3 component n-recognin 2
           (Ubr2), mRNA
          Length = 7511

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 caagaggatcctcctcctcc 269
           ||||||||||||||||||||
Sbjct: 668 caagaggatcctcctcctcc 649
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>emb|BX005125.11| Zebrafish DNA sequence from clone CH211-127I16 in linkage group 10,
             complete sequence
          Length = 172587

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    ctggaccaacattgacagat 95
             ||||||||||||||||||||
Sbjct: 37815 ctggaccaacattgacagat 37796
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>dbj|AK122254.2| Mus musculus mRNA for mKIAA0349 protein
          Length = 6521

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 caagaggatcctcctcctcc 269
           ||||||||||||||||||||
Sbjct: 801 caagaggatcctcctcctcc 782
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>gb|AC153873.5| Mus musculus 10 BAC RP23-87M12 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207864

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     aacttatttttctttttcat 23
             ||||||||||||||||||||
Sbjct: 12132 aacttatttttctttttcat 12113
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>emb|CR925824.7| Zebrafish DNA sequence from clone DKEYP-66E4 in linkage group 10,
             complete sequence
          Length = 178116

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    ctggaccaacattgacagat 95
             ||||||||||||||||||||
Sbjct: 16078 ctggaccaacattgacagat 16059
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>gb|AC155334.7| Mus musculus 6 BAC RP24-420O24 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 153509

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      aacttatttttctttttcat 23
              ||||||||||||||||||||
Sbjct: 135731 aacttatttttctttttcat 135712
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>gb|AC122547.11| Mus musculus chromosome 1, clone RP23-76P20, complete sequence
          Length = 232651

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      cgaacttatttttctttttc 21
              ||||||||||||||||||||
Sbjct: 144199 cgaacttatttttctttttc 144218
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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 368     agaaatcgacggtttgcaggaaat 391
               |||||||| |||||||||||||||
Sbjct: 1706272 agaaatcgccggtttgcaggaaat 1706249
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>gb|AC119855.16| Mus musculus chromosome 3, clone RP23-243H19, complete sequence
          Length = 196477

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     agaagcaacagccacaagac 52
              ||||||||||||||||||||
Sbjct: 121904 agaagcaacagccacaagac 121885
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>gb|BC075642.1| Mus musculus ubiquitin protein ligase E3 component n-recognin 2,
           mRNA (cDNA clone MGC:93015 IMAGE:30544183), complete cds
          Length = 7511

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 caagaggatcctcctcctcc 269
           ||||||||||||||||||||
Sbjct: 668 caagaggatcctcctcctcc 649


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,822,474
Number of Sequences: 3902068
Number of extensions: 5822474
Number of successful extensions: 121277
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121056
Number of HSP's gapped (non-prelim): 217
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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