ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast59c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK109368.3| Oryza sativa (japonica cultivar-group) cDNA clon... 149 8e-33
2dbj|AK073310.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 8e-33
3dbj|AK069916.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 8e-33
4dbj|AK061376.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 8e-33
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 137 3e-29
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 137 3e-29
7emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536... 137 3e-29
8emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510... 137 3e-29
9gb|AY110462.1| Zea mays CL7112_1 mRNA sequence 76 1e-10
10gb|AC164701.4| Mus musculus BAC clone RP24-108J12 from chromosom... 42 1.4
11gb|AC121945.2| Mus musculus BAC clone RP24-211I4 from 17, comple... 42 1.4
12gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 1.4
13gb|AC073608.19| Homo sapiens 12 BAC RP11-36P3 (Roswell Park Canc... 42 1.4
14gb|AE010355.1| Methanopyrus kandleri AV19 section 54 of 157 of t... 40 5.5
15ref|NM_186383.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
16gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 5.5
17gb|AE009050.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 5.5
18emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.5
19gb|AC025824.37| Homo sapiens chromosome 15 clone RP11-430M3, com... 40 5.5
20gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 5.5
21gb|AC091580.11| Homo sapiens chromosome 15, clone RP11-304N14, c... 40 5.5
22gb|AC090696.6| Homo sapiens chromosome 15, clone RP11-595N10, co... 40 5.5
23gb|AC010837.2| Homo sapiens chromosome 18, clone RP11-307E5, com... 40 5.5
24dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
25dbj|AP000055.1| Homo sapiens genomic DNA, chromosome 21q22.1, se... 40 5.5
26dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.5
27dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
28dbj|BS000191.1| Pan troglodytes chromosome 22 clone:PTB-015O01, ... 40 5.5
29emb|Y08849.1|MKMCHGENE M.kandleri mch gene 40 5.5
30dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
31dbj|AP001720.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.5
32gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 5.5
33emb|Z84492.2|HSLUCA11 Human DNA sequence from clone XXcos-11 on ... 40 5.5
34dbj|AP000329.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 5.5
35dbj|AP000170.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 5.5 
>dbj|AK109368.3| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D03, full
            insert sequence
          Length = 1826

 Score =  149 bits (75), Expect = 8e-33
 Identities = 185/222 (83%)
 Strand = Plus / Minus

                                                                        
Query: 159  tcagagcggcttcctgtgcgcggaggaggccatgagcacggacatggcgacgacnaacat 218
            |||||||||| ||| |||||| || || |||||||| | |  |||||||||||| |||||
Sbjct: 1480 tcagagcggcctccggtgcgccgacgacgccatgaggatgaccatggcgacgacgaacat 1421

                                                                        
Query: 219  gaagagcatgctccccagcagcgtgtacgtcctcctcgacgacctccggtactccccgaa 278
            ||| |||||||||||||| || ||||| |||| || |||||| ||||||||||| |||||
Sbjct: 1420 gaacagcatgctccccaggagagtgtaagtccgccgcgacgatctccggtactcgccgaa 1361

                                                                        
Query: 279  cagcaccacgccccagaacgtgctcaccagcggcagcgcctgcacggagtccgccgccgc 338
            |||||| |  ||||| | ||||||||||||||||| |||||| || | ||| || || ||
Sbjct: 1360 cagcacgatcccccacaccgtgctcaccagcggcaacgcctggacagcgtcagcagcagc 1301

                                                      
Query: 339  gtacccggccgcctgcccggccatgaacgtgaacgcgttgcc 380
             ||||| || |||||||| |||||||||  |||||| |||||
Sbjct: 1300 atacccagcagcctgcccagccatgaactggaacgcattgcc 1259
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>dbj|AK073310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030F01, full
            insert sequence
          Length = 2721

 Score =  149 bits (75), Expect = 8e-33
 Identities = 185/222 (83%)
 Strand = Plus / Minus

                                                                        
Query: 159  tcagagcggcttcctgtgcgcggaggaggccatgagcacggacatggcgacgacnaacat 218
            |||||||||| ||| |||||| || || |||||||| | |  |||||||||||| |||||
Sbjct: 2375 tcagagcggcctccggtgcgccgacgacgccatgaggatgaccatggcgacgacgaacat 2316

                                                                        
Query: 219  gaagagcatgctccccagcagcgtgtacgtcctcctcgacgacctccggtactccccgaa 278
            ||| |||||||||||||| || ||||| |||| || |||||| ||||||||||| |||||
Sbjct: 2315 gaacagcatgctccccaggagagtgtaagtccgccgcgacgatctccggtactcgccgaa 2256

                                                                        
Query: 279  cagcaccacgccccagaacgtgctcaccagcggcagcgcctgcacggagtccgccgccgc 338
            |||||| |  ||||| | ||||||||||||||||| |||||| || | ||| || || ||
Sbjct: 2255 cagcacgatcccccacaccgtgctcaccagcggcaacgcctggacagcgtcagcagcagc 2196

                                                      
Query: 339  gtacccggccgcctgcccggccatgaacgtgaacgcgttgcc 380
             ||||| || |||||||| |||||||||  |||||| |||||
Sbjct: 2195 atacccagcagcctgcccagccatgaactggaacgcattgcc 2154
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>dbj|AK069916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038C16, full
            insert sequence
          Length = 2118

 Score =  149 bits (75), Expect = 8e-33
 Identities = 185/222 (83%)
 Strand = Plus / Minus

                                                                        
Query: 159  tcagagcggcttcctgtgcgcggaggaggccatgagcacggacatggcgacgacnaacat 218
            |||||||||| ||| |||||| || || |||||||| | |  |||||||||||| |||||
Sbjct: 1492 tcagagcggcctccggtgcgccgacgacgccatgaggatgaccatggcgacgacgaacat 1433

                                                                        
Query: 219  gaagagcatgctccccagcagcgtgtacgtcctcctcgacgacctccggtactccccgaa 278
            ||| |||||||||||||| || ||||| |||| || |||||| ||||||||||| |||||
Sbjct: 1432 gaacagcatgctccccaggagagtgtaagtccgccgcgacgatctccggtactcgccgaa 1373

                                                                        
Query: 279  cagcaccacgccccagaacgtgctcaccagcggcagcgcctgcacggagtccgccgccgc 338
            |||||| |  ||||| | ||||||||||||||||| |||||| || | ||| || || ||
Sbjct: 1372 cagcacgatcccccacaccgtgctcaccagcggcaacgcctggacagcgtcagcagcagc 1313

                                                      
Query: 339  gtacccggccgcctgcccggccatgaacgtgaacgcgttgcc 380
             ||||| || |||||||| |||||||||  |||||| |||||
Sbjct: 1312 atacccagcagcctgcccagccatgaactggaacgcattgcc 1271
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>dbj|AK061376.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-G07, full
            insert sequence
          Length = 1828

 Score =  149 bits (75), Expect = 8e-33
 Identities = 185/222 (83%)
 Strand = Plus / Minus

                                                                        
Query: 159  tcagagcggcttcctgtgcgcggaggaggccatgagcacggacatggcgacgacnaacat 218
            |||||||||| ||| |||||| || || |||||||| | |  |||||||||||| |||||
Sbjct: 1480 tcagagcggcctccggtgcgccgacgacgccatgaggatgaccatggcgacgacgaacat 1421

                                                                        
Query: 219  gaagagcatgctccccagcagcgtgtacgtcctcctcgacgacctccggtactccccgaa 278
            ||| |||||||||||||| || ||||| |||| || |||||| ||||||||||| |||||
Sbjct: 1420 gaacagcatgctccccaggagagtgtaagtccgccgcgacgatctccggtactcgccgaa 1361

                                                                        
Query: 279  cagcaccacgccccagaacgtgctcaccagcggcagcgcctgcacggagtccgccgccgc 338
            |||||| |  ||||| | ||||||||||||||||| |||||| || | ||| || || ||
Sbjct: 1360 cagcacgatcccccacaccgtgctcaccagcggcaacgcctggacagcgtcagcagcagc 1301

                                                      
Query: 339  gtacccggccgcctgcccggccatgaacgtgaacgcgttgcc 380
             ||||| || |||||||| |||||||||  |||||| |||||
Sbjct: 1300 atacccagcagcctgcccagccatgaactggaacgcattgcc 1259
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  137 bits (69), Expect = 3e-29
 Identities = 140/164 (85%)
 Strand = Plus / Plus

                                                                            
Query: 159      tcagagcggcttcctgtgcgcggaggaggccatgagcacggacatggcgacgacnaacat 218
                |||||||||| ||| |||||| || || |||||||| | |  |||||||||||| |||||
Sbjct: 19222153 tcagagcggcctccggtgcgccgacgacgccatgaggatgaccatggcgacgacgaacat 19222212

                                                                            
Query: 219      gaagagcatgctccccagcagcgtgtacgtcctcctcgacgacctccggtactccccgaa 278
                ||| |||||||||||||| || ||||| |||| || |||||| ||||||||||| |||||
Sbjct: 19222213 gaacagcatgctccccaggagagtgtaagtccgccgcgacgatctccggtactcgccgaa 19222272

                                                            
Query: 279      cagcaccacgccccagaacgtgctcaccagcggcagcgcctgca 322
                |||||| |  ||||| | ||||||||||||||||| ||||||||
Sbjct: 19222273 cagcacgatcccccacaccgtgctcaccagcggcaacgcctgca 19222316
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  137 bits (69), Expect = 3e-29
 Identities = 140/164 (85%)
 Strand = Plus / Plus

                                                                            
Query: 159      tcagagcggcttcctgtgcgcggaggaggccatgagcacggacatggcgacgacnaacat 218
                |||||||||| ||| |||||| || || |||||||| | |  |||||||||||| |||||
Sbjct: 19148380 tcagagcggcctccggtgcgccgacgacgccatgaggatgaccatggcgacgacgaacat 19148439

                                                                            
Query: 219      gaagagcatgctccccagcagcgtgtacgtcctcctcgacgacctccggtactccccgaa 278
                ||| |||||||||||||| || ||||| |||| || |||||| ||||||||||| |||||
Sbjct: 19148440 gaacagcatgctccccaggagagtgtaagtccgccgcgacgatctccggtactcgccgaa 19148499

                                                            
Query: 279      cagcaccacgccccagaacgtgctcaccagcggcagcgcctgca 322
                |||||| |  ||||| | ||||||||||||||||| ||||||||
Sbjct: 19148500 cagcacgatcccccacaccgtgctcaccagcggcaacgcctgca 19148543
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>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 127026

 Score =  137 bits (69), Expect = 3e-29
 Identities = 140/164 (85%)
 Strand = Plus / Minus

                                                                        
Query: 159  tcagagcggcttcctgtgcgcggaggaggccatgagcacggacatggcgacgacnaacat 218
            |||||||||| ||| |||||| || || |||||||| | |  |||||||||||| |||||
Sbjct: 3792 tcagagcggcctccggtgcgccgacgacgccatgaggatgaccatggcgacgacgaacat 3733

                                                                        
Query: 219  gaagagcatgctccccagcagcgtgtacgtcctcctcgacgacctccggtactccccgaa 278
            ||| |||||||||||||| || ||||| |||| || |||||| ||||||||||| |||||
Sbjct: 3732 gaacagcatgctccccaggagagtgtaagtccgccgcgacgatctccggtactcgccgaa 3673

                                                        
Query: 279  cagcaccacgccccagaacgtgctcaccagcggcagcgcctgca 322
            |||||| |  ||||| | ||||||||||||||||| ||||||||
Sbjct: 3672 cagcacgatcccccacaccgtgctcaccagcggcaacgcctgca 3629
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>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 136155

 Score =  137 bits (69), Expect = 3e-29
 Identities = 140/164 (85%)
 Strand = Plus / Plus

                                                                         
Query: 159   tcagagcggcttcctgtgcgcggaggaggccatgagcacggacatggcgacgacnaacat 218
             |||||||||| ||| |||||| || || |||||||| | |  |||||||||||| |||||
Sbjct: 55483 tcagagcggcctccggtgcgccgacgacgccatgaggatgaccatggcgacgacgaacat 55542

                                                                         
Query: 219   gaagagcatgctccccagcagcgtgtacgtcctcctcgacgacctccggtactccccgaa 278
             ||| |||||||||||||| || ||||| |||| || |||||| ||||||||||| |||||
Sbjct: 55543 gaacagcatgctccccaggagagtgtaagtccgccgcgacgatctccggtactcgccgaa 55602

                                                         
Query: 279   cagcaccacgccccagaacgtgctcaccagcggcagcgcctgca 322
             |||||| |  ||||| | ||||||||||||||||| ||||||||
Sbjct: 55603 cagcacgatcccccacaccgtgctcaccagcggcaacgcctgca 55646
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>gb|AY110462.1| Zea mays CL7112_1 mRNA sequence
          Length = 752

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 127/157 (80%)
 Strand = Plus / Minus

                                                                       
Query: 210 gacnaacatgaagagcatgctccccagcagcgtgtacgtcctcctcgacgacctccggta 269
           ||| |||||||||||||||   || |||||   ||| ||| ||| ||||||| | |||||
Sbjct: 752 gacgaacatgaagagcatgaagccgagcaggacgtaggtcttccgcgacgacttgcggta 693

                                                                       
Query: 270 ctccccgaacagcaccacgccccagaacgtgctcaccagcggcagcgcctgcacggagtc 329
           ||||||||| ||||  ||||||||||| ||||| || |||||||| ||||| || | |||
Sbjct: 692 ctccccgaagagcagtacgccccagaaggtgctgacgagcggcagggcctggacagcgtc 633

                                                
Query: 330 cgccgccgcgtacccggccgcctgcccggccatgaac 366
            || || |||||||| || ||||| ||| ||||||||
Sbjct: 632 agcggcggcgtaccctgctgcctggccgcccatgaac 596
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>gb|AC164701.4| Mus musculus BAC clone RP24-108J12 from chromosome 17, complete sequence
          Length = 184296

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 83     aagaacttgctagcctctctg 103
              |||||||||||||||||||||
Sbjct: 111832 aagaacttgctagcctctctg 111852
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>gb|AC121945.2| Mus musculus BAC clone RP24-211I4 from 17, complete sequence
          Length = 157262

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 83    aagaacttgctagcctctctg 103
             |||||||||||||||||||||
Sbjct: 43024 aagaacttgctagcctctctg 43044
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 276     gaacagcaccacgccccagaacgtg 300
               |||||||| ||||||||||||||||
Sbjct: 2417327 gaacagcatcacgccccagaacgtg 2417303
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>gb|AC073608.19| Homo sapiens 12 BAC RP11-36P3 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 111182

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 3    ggggcctgaattttctaacca 23
            |||||||||||||||||||||
Sbjct: 9915 ggggcctgaattttctaacca 9935
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>gb|AE010355.1| Methanopyrus kandleri AV19 section 54 of 157 of the complete genome
          Length = 11133

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   ctcctcgacgacctccggta 269
             ||||||||||||||||||||
Sbjct: 10868 ctcctcgacgacctccggta 10849
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>ref|NM_186383.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 564

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 303 caccagcggcagcgcctgca 322
           ||||||||||||||||||||
Sbjct: 360 caccagcggcagcgcctgca 341
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 314     gcgcctgcacggagtccgccgccg 337
               |||||||||||| |||||||||||
Sbjct: 2619106 gcgcctgcacggtgtccgccgccg 2619083
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>gb|AE009050.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 76 of
            256 of the complete sequence
          Length = 12647

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 303  caccagcggcagcgcctgca 322
            ||||||||||||||||||||
Sbjct: 4864 caccagcggcagcgcctgca 4845
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 314    gcgcctgcacggagtccgccgccg 337
              |||||||||||| |||||||||||
Sbjct: 799100 gcgcctgcacggtgtccgccgccg 799077
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>gb|AC025824.37| Homo sapiens chromosome 15 clone RP11-430M3, complete sequence
          Length = 177917

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   aacagcaccacgccccagaa 296
             ||||||||||||||||||||
Sbjct: 61340 aacagcaccacgccccagaa 61359
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    caccagcggcagcgcctgca 322
              ||||||||||||||||||||
Sbjct: 833479 caccagcggcagcgcctgca 833460
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>gb|AC091580.11| Homo sapiens chromosome 15, clone RP11-304N14, complete sequence
          Length = 108369

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    aacagcaccacgccccagaa 296
              ||||||||||||||||||||
Sbjct: 106469 aacagcaccacgccccagaa 106488
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>gb|AC090696.6| Homo sapiens chromosome 15, clone RP11-595N10, complete sequence
          Length = 187350

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    tgaagagcatgctccccagc 237
              ||||||||||||||||||||
Sbjct: 163830 tgaagagcatgctccccagc 163849
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>gb|AC010837.2| Homo sapiens chromosome 18, clone RP11-307E5, complete sequence
          Length = 210074

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   tgaagagcatgctccccagc 237
             ||||||||||||||||||||
Sbjct: 29594 tgaagagcatgctccccagc 29613
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 303     caccagcggcagcgcctgca 322
               ||||||||||||||||||||
Sbjct: 3212857 caccagcggcagcgcctgca 3212838
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>dbj|AP000055.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 26/28, complete
             sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   tgaagagcatgctccccagc 237
             ||||||||||||||||||||
Sbjct: 69645 tgaagagcatgctccccagc 69664
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 336     cgcgtacccggccgcctgcccggc 359
               ||||| ||||||||||||||||||
Sbjct: 4277731 cgcgtccccggccgcctgcccggc 4277754
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>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0455F03
          Length = 158201

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    caccagcggcagcgcctgca 322
              ||||||||||||||||||||
Sbjct: 127847 caccagcggcagcgcctgca 127828
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>dbj|BS000191.1| Pan troglodytes chromosome 22 clone:PTB-015O01, map 22, complete
              sequences
          Length = 155412

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    tgaagagcatgctccccagc 237
              ||||||||||||||||||||
Sbjct: 117844 tgaagagcatgctccccagc 117863
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>emb|Y08849.1|MKMCHGENE M.kandleri mch gene
          Length = 1500

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 250  ctcctcgacgacctccggta 269
            ||||||||||||||||||||
Sbjct: 1003 ctcctcgacgacctccggta 984
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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   caccagcggcagcgcctgca 322
             ||||||||||||||||||||
Sbjct: 22550 caccagcggcagcgcctgca 22531
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>dbj|AP001720.1| Homo sapiens genomic DNA, chromosome 21q, section 64/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    tgaagagcatgctccccagc 237
              ||||||||||||||||||||
Sbjct: 251854 tgaagagcatgctccccagc 251873
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 347     ccgcctgcccggccatgaac 366
               ||||||||||||||||||||
Sbjct: 5262152 ccgcctgcccggccatgaac 5262171
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>emb|Z84492.2|HSLUCA11 Human DNA sequence from clone XXcos-11 on chromosome 3 Contains the 3'
             part of the gene for calcium channel, voltage-dependent, L
             type, alpha 2D subunit (KIAA0558) and the first exon of
             the gene for PL6 protein (deleted in Small Cell Lung
             Carcinoma). Contains ESTs, GSSs and a putative CpG island,
             complete sequence
          Length = 27844

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   aggaggccatgagcacggac 201
             ||||||||||||||||||||
Sbjct: 26970 aggaggccatgagcacggac 26951
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>dbj|AP000329.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
            clone:Q92D1, complete sequence
          Length = 10909

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 218  tgaagagcatgctccccagc 237
            ||||||||||||||||||||
Sbjct: 8035 tgaagagcatgctccccagc 8054
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>dbj|AP000170.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             B2344F14-f50E8, segment 6/9, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   tgaagagcatgctccccagc 237
             ||||||||||||||||||||
Sbjct: 61613 tgaagagcatgctccccagc 61632


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,296,670
Number of Sequences: 3902068
Number of extensions: 2296670
Number of successful extensions: 42719
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42279
Number of HSP's gapped (non-prelim): 439
length of query: 408
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 386
effective length of database: 17,147,199,772
effective search space: 6618819111992
effective search space used: 6618819111992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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