ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbast59c05 |
|---|---|
| Clone Library Name | barley_pub |
>RS23_YEAST (P32827) 40S ribosomal protein S23 (S28) (YS14) (RP37)| Length = 145 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +1 Query: 175 MVTGRRVQLSDKRKLRQQQRSNRLSIVGHKKALRTTEIK-SPIGCSRH 315 M G+ L+ RKLR +R+NR + +KK L T K SP G S H Sbjct: 1 MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSH 48
>RS23_SACCA (Q6YIA2) 40S ribosomal protein S23| Length = 145 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +1 Query: 175 MVTGRRVQLSDKRKLRQQQRSNRLSIVGHKKALRTTEIK-SPIGCSRH 315 M G+ L+ RKLR +R+NR + +KK L T K SP G S H Sbjct: 1 MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSH 48
>RS23_SACBA (Q6YIA3) 40S ribosomal protein S23| Length = 145 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +1 Query: 175 MVTGRRVQLSDKRKLRQQQRSNRLSIVGHKKALRTTEIK-SPIGCSRH 315 M G+ L+ RKLR +R+NR + +KK L T K SP G S H Sbjct: 1 MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSH 48
>RS23_CANGA (Q6FLA8) 40S ribosomal protein S23| Length = 145 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +1 Query: 175 MVTGRRVQLSDKRKLRQQQRSNRLSIVGHKKALRTTEIK-SPIGCSRH 315 M G+ L+ RKLR +R+NR + +KK L T K SP G S H Sbjct: 1 MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSH 48
>PESC_HUMAN (O00541) Pescadillo homolog 1| Length = 588 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Frame = +1 Query: 151 EQTKGKKEMVTGRRVQLSDKRKLRQQQRS--NRLSIVGHKKALRTTEIKSPIGCSRHTMR 324 ++ +GKK V ++L DK++L Q++ S RL+I+ KK + K G R Sbjct: 502 QRMEGKKPRVMAGTLKLEDKQRLAQEEESEAKRLAIMMMKKREKYLYQKIMFGKRRKIRE 561 Query: 325 AN 330 AN Sbjct: 562 AN 563
>URAA_PASMU (Q9CPL9) Probable uracil permease (Uracil transporter)| Length = 417 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/43 (30%), Positives = 20/43 (46%) Frame = -1 Query: 238 LISVVVEAFFCLTIGHVYLSPSLFSPWFAPSSARLPTDKDSAI 110 + +VV CL +G + P + +PWF+ P K AI Sbjct: 185 MFGIVVGYILCLFLGLINFQPVIDAPWFSVPEITTPEFKLEAI 227
>RS23_SCHPO (P79057) 40S ribosomal protein S23| Length = 143 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +1 Query: 184 GRRVQLSDKRKLRQQQRSNRLSIVGHKKALRTTEIK-SPIGCSRH 315 G+ L+ RKLR +R R + +KK L T K SP G S H Sbjct: 2 GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSH 46
>RS23A_ARATH (Q9SF35) 40S ribosomal protein S23-1 (S12)| Length = 142 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +1 Query: 211 RKLRQQQRSNRLSIVGHKKALRTTEIKSPIGCSRH 315 RKL+Q + + R + +KK+ R E K P CS H Sbjct: 11 RKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSH 45
>RS23_NEUCR (Q9HE74) 40S ribosomal protein S23| Length = 145 Score = 28.5 bits (62), Expect = 4.0 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +1 Query: 175 MVTGRRVQLSDKRKLRQQQRSNRLSIVGHKK-ALRTTEIKSPIGCSRH 315 M G+ L+ RKLR +R R S + +KK AL T SP G S H Sbjct: 1 MSGGKPRGLNAARKLRNNRREQRWSDLHYKKRALGTAFKSSPFGGSSH 48
>FASD_ECOLI (P46000) Outer membrane usher protein fasD precursor| Length = 835 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = -1 Query: 175 SLFSPWFAPSSARLPTDKDSAIYSGAAVAKESFVSGIRIWGPGHT 41 ++ PW RL DS I +GAAV + F+SGI++ G T Sbjct: 656 AILYPW------RLAIGSDSVI-NGAAVVETEFISGIKVRQGGET 693
>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7059 Score = 27.7 bits (60), Expect = 6.8 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 17/97 (17%) Frame = -1 Query: 277 FSKLSCVQQ---WTGDLISVVVEAFFCLTIGHVYLSPSLFSPWFAPSSARLPTD-----K 122 F + C Q + G + +++ F C T GHVY + L A SS LP + K Sbjct: 387 FGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYETGDL----LAQSSGVLPVNPVLHTK 442 Query: 121 DSAIYSGAAVAKESFV---------SGIRIWGPGHTL 38 +A Y G K+SF G W P + Sbjct: 443 SAAGYGGFG-CKDSFTLYGQTVVYFGGCVYWSPARNI 478
>MRAW_SYNY3 (P73460) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 305 Score = 27.7 bits (60), Expect = 6.8 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 13/98 (13%) Frame = +3 Query: 54 PQILMPDTKLSFATAAPEYIALSLSVGSLADDGANQ-------------GEKRDGDR*TC 194 PQ+ D SF AP + + S A + N GE+R R Sbjct: 122 PQLDQGDRGFSFRHTAPLDMRMDQSQDLTAAEIINHWSEKDLARIFYEYGEERLSRRIAR 181 Query: 195 PIVRQKKASTTTEIKSPVHCWTQESFENNRDQIAYRLF 308 IV Q+ TTT++ + W + + R A R F Sbjct: 182 QIVEQRPFQTTTDLAEAITKWVPGKYRHGRIHPATRTF 219
>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7094 Score = 27.7 bits (60), Expect = 6.8 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 17/97 (17%) Frame = -1 Query: 277 FSKLSCVQQ---WTGDLISVVVEAFFCLTIGHVYLSPSLFSPWFAPSSARLPTD-----K 122 F + C Q + G + +++ F C T GHVY + L A SS LP + K Sbjct: 387 FGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYETGDL----LAQSSGVLPVNPVLHTK 442 Query: 121 DSAIYSGAAVAKESFV---------SGIRIWGPGHTL 38 +A Y G K+SF G W P + Sbjct: 443 SAAGYGGFG-CKDSFTLYGQTVVYFGGCVYWSPARNI 478
>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 27.7 bits (60), Expect = 6.8 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 17/97 (17%) Frame = -1 Query: 277 FSKLSCVQQ---WTGDLISVVVEAFFCLTIGHVYLSPSLFSPWFAPSSARLPTD-----K 122 F + C Q + G + +++ F C T GHVY + L A SS LP + K Sbjct: 387 FGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYETGDL----LAQSSGVLPVNPVLHTK 442 Query: 121 DSAIYSGAAVAKESFV---------SGIRIWGPGHTL 38 +A Y G K+SF G W P + Sbjct: 443 SAAGYGGFG-CKDSFTLYGQTVVYFGGCVYWSPARNI 478
>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 27.7 bits (60), Expect = 6.8 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 17/97 (17%) Frame = -1 Query: 277 FSKLSCVQQ---WTGDLISVVVEAFFCLTIGHVYLSPSLFSPWFAPSSARLPTD-----K 122 F + C Q + G + +++ F C T GHVY + L A SS LP + K Sbjct: 387 FGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYETGDL----LAQSSGVLPVNPVLHTK 442 Query: 121 DSAIYSGAAVAKESFV---------SGIRIWGPGHTL 38 +A Y G K+SF G W P + Sbjct: 443 SAAGYGGFG-CKDSFTLYGQTVVYFGGCVYWSPARNI 478
>DGC14_CAEEL (P34420) DGCR14 protein homolog (DiGeorge syndrome critical region| 14 homolog) Length = 531 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = -1 Query: 187 YLSPSLFSPWFAPSSARLPTDKDSAIYSGAAVAKESFVSGIRIWG-PG 47 + SP + S W PSS++ T SA G+ S+ G + G PG Sbjct: 454 FASPKIMSNWSRPSSSKRSTTPGSAWSRGSTTPGSSWSQGAQTPGTPG 501
>MMP19_HUMAN (Q99542) Matrix metalloproteinase-19 precursor (EC 3.4.24.-)| (MMP-19) (Matrix metalloproteinase RASI) (MMP-18) Length = 508 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +2 Query: 302 VVRDIQCEPTYLCACLQLKSKPSRHPDPCMGEV 400 V+RD + E T L + ++PS PDPC E+ Sbjct: 261 VIRDEEEEETELPTVPPVPTEPSPMPDPCSSEL 293
>ACM3_CHICK (P49578) Muscarinic acetylcholine receptor M3| Length = 639 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +1 Query: 205 DKRKLRQQQRSNRLSIVGHKKALR 276 DKRK R+QQ R S++ HK+ R Sbjct: 613 DKRKRRKQQYQQRQSVIFHKRIPR 636
>SYP2L_MOUSE (Q8BWB1) Synaptopodin 2-like protein| Length = 975 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = +1 Query: 163 GKKEMVTGRRVQLSDKRKLRQQQRSNRLSIVGHKKALRTTEIKSP 297 G+ V+GR VQL ++++ R S L+ VG L ++SP Sbjct: 375 GQLSEVSGRGVQLFEQQRQRVASSSQELAQVGPAAMLNGQSLQSP 419
>ACM3_PONPY (Q9N2A2) Muscarinic acetylcholine receptor M3| Length = 590 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +1 Query: 205 DKRKLRQQQRSNRLSIVGHKKA 270 DK+K R+QQ R S++ HK+A Sbjct: 564 DKKKRRKQQYQQRQSVIFHKRA 585
>ACM3_PANTR (Q9N2A4) Muscarinic acetylcholine receptor M3| Length = 590 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +1 Query: 205 DKRKLRQQQRSNRLSIVGHKKA 270 DK+K R+QQ R S++ HK+A Sbjct: 564 DKKKRRKQQYQZRQSVIFHKRA 585
>ACM3_HUMAN (P20309) Muscarinic acetylcholine receptor M3| Length = 590 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +1 Query: 205 DKRKLRQQQRSNRLSIVGHKKA 270 DK+K R+QQ R S++ HK+A Sbjct: 564 DKKKRRKQQYQQRQSVIFHKRA 585
>BPIL2_MOUSE (Q8C186) Bactericidal/permeability-increasing protein-like 2| precursor Length = 509 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -1 Query: 196 GHVYLSPSLFSPWFAPSSARLPTDKDSAIYSG 101 G Y SL P F P+ LP +DS +Y G Sbjct: 252 GAFYPLESLVDPPFTPAPFHLPESRDSMLYIG 283 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,800,563 Number of Sequences: 219361 Number of extensions: 1142336 Number of successful extensions: 3054 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2987 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3053 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
