ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast59b08 |
|---|---|
| Clone Library Name | barley_pub |
>ILV5_ARATH (Q05758) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 591 Score = 149 bits (377), Expect = 2e-36 Identities = 73/83 (87%), Positives = 76/83 (91%) Frame = -1 Query: 432 VDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAEL 253 VDNCSTTARLGSRKWAPRFDYILTQQA V VD A IN+DLISNF SDPVHGAIEVCA+L Sbjct: 508 VDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQL 567 Query: 252 RPTVDISVTADADFVRPELRQSA 184 RPTVDISV ADADFVRPELRQS+ Sbjct: 568 RPTVDISVPADADFVRPELRQSS 590
>ILV5_PEA (O82043) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 581 Score = 148 bits (374), Expect = 5e-36 Identities = 72/81 (88%), Positives = 75/81 (92%) Frame = -1 Query: 432 VDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAEL 253 VDNCSTTARLGSRKWAPRFDYILTQQA V VD APINQDLISNF+SDPVHGAI+VCAEL Sbjct: 498 VDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAEL 557 Query: 252 RPTVDISVTADADFVRPELRQ 190 RPT+DISV A ADFVRPELRQ Sbjct: 558 RPTLDISVPAAADFVRPELRQ 578
>ILV5_SPIOL (Q01292) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 595 Score = 147 bits (370), Expect = 1e-35 Identities = 71/82 (86%), Positives = 76/82 (92%) Frame = -1 Query: 432 VDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAEL 253 VDNCSTTARLGSRKWAPRFDYIL+QQA V VD APINQDLISNF+SDPVH AI VCA+L Sbjct: 514 VDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQL 573 Query: 252 RPTVDISVTADADFVRPELRQS 187 RP+VDISVTADADFVRPELRQ+ Sbjct: 574 RPSVDISVTADADFVRPELRQA 595
>SYS_COREF (Q8FLY5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 419 Score = 31.2 bits (69), Expect = 1.1 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = +1 Query: 226 RHRDVDGGPQLGANLDGAVDGVRHEVA---DEVLVDGRILVHRHKR-LLGQDVVE 378 R+RD +G PQ+ A L+G + R VA + DG ++V R +G+DV+E Sbjct: 362 RYRDENGKPQIAATLNGTLATTRWLVAILENNQQADGSVIVPEALRPFVGKDVLE 416
>ICAA_STAAW (Q8NUI7) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 378 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 271 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAU (Q9RQP9) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 378 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 271 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAS (Q6G608) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 378 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 271 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAR (Q6GDD8) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 378 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 271 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAN (Q7A351) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 378 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 271 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAM (Q99QX3) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 378 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 271 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAC (Q5HCN1) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 378 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 271 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 29.3 bits (64), Expect = 4.2 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +1 Query: 148 HPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGP 252 HP+ + SDP L R P L H + G D GP Sbjct: 862 HPTGSRLSDPRLSRDPRLSRHAETSGGSGPGDSGP 896
>SYS_CORGL (Q8NLP6) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 422 Score = 29.3 bits (64), Expect = 4.2 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = +1 Query: 226 RHRDVDGGPQLGANLDGAVDGVRHEVA---DEVLVDGRILVHRHKR-LLGQDVVE 378 R+RD +G PQ+ A L+G + R VA + DG ++V R +G+DV++ Sbjct: 362 RYRDENGKPQIAATLNGTLATTRWLVAILENNQQADGSVVVPEALRPFVGKDVLK 416
>FIT3_YEAST (Q08907) Facilitator of iron transport 3 precursor| Length = 204 Score = 29.3 bits (64), Expect = 4.2 Identities = 17/74 (22%), Positives = 38/74 (51%) Frame = +2 Query: 125 YITVHELSTHQKTTLQTRI*ADCRSSGRTKSASAVTEMSTVGLSSAQTSMAPWTGSDMKL 304 ++ E S++ + T ++ +S + +A+ E S+ SS+ ++ +TG+ + Sbjct: 128 FVWTGEGSSNTWSPSSTSTSSEAATSSASTTATTTAETSSSATSSSTAELSSYTGAADAI 187 Query: 305 LMRSWLMGASLSTV 346 + LMGA+L+ V Sbjct: 188 TAGTGLMGAALAAV 201
>FLO1_YEAST (P32768) Flocculation protein FLO1 precursor (Flocculin-1)| Length = 1537 Score = 29.3 bits (64), Expect = 4.2 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 1/84 (1%) Frame = +2 Query: 35 NGDDSLDPTPTGGSLYLTQQLTGSNS*SHAYITVHELSTHQKTTLQTRI*ADCRSSGRTK 214 + + S PT + SL L T S + + T ++TTL T C S T+ Sbjct: 1191 SSESSKSPTYSSSSLPLVTSATTSQETASSLPPATTTKTSEQTTLVTV--TSCESHVCTE 1248 Query: 215 SAS-AVTEMSTVGLSSAQTSMAPW 283 S S A+ +TV +S T W Sbjct: 1249 SISPAIVSTATVTVSGVTTEYTTW 1272
>ILV5_NEUCR (P38674) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 402 Score = 28.9 bits (63), Expect = 5.5 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -1 Query: 429 DNCSTTARLGSRKWAPRF 376 D CSTTAR G+ W P+F Sbjct: 320 DACSTTARRGAIDWTPKF 337
>DXR_DEIRA (Q9RU84) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 396 Score = 28.9 bits (63), Expect = 5.5 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Frame = +1 Query: 181 LGRLPELRTHEVSIGRHRDVDGGP-QLGANLDGAVDGVRHEVADEVLVDGRILVHRHKRL 357 LG + T + + R R G G NLD + VR V VDG IL +RL Sbjct: 9 LGSTGSIGTQTLDVARQRGYTVGTLAAGRNLDLLAEQVREFRPALVSVDGSILAEARERL 68 Query: 358 LGQDVV 375 G V+ Sbjct: 69 SGVRVI 74
>CB025_MOUSE (Q99LS1) Protein C2orf25 homolog, mitochondrial precursor| Length = 296 Score = 28.5 bits (62), Expect = 7.2 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = -1 Query: 381 RFDYILTQQAFVTVDKDAPINQDLIS---NFMSDPVHGAIEVCAEL 253 R ++++ Q D DAP+ Q++ S F S V AI+ C EL Sbjct: 111 RHEFVMAQYVNEFQDSDAPVEQEINSAETYFESAKVECAIQTCPEL 156
>ILV5_SCHPO (P78827) Probable ketol-acid reductoisomerase, mitochondrial| precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 404 Score = 28.5 bits (62), Expect = 7.2 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -1 Query: 423 CSTTARLGSRKWAPRF 376 CSTTAR G+ W PRF Sbjct: 323 CSTTARRGAIDWTPRF 338
>GUAA_DEHE1 (Q3Z886) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 533 Score = 28.5 bits (62), Expect = 7.2 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 10/49 (20%) Frame = -3 Query: 430 GQLLDDGPAGVEEVGAPLRLHPDPA----------GVCDGGQGCAHQPG 314 G +L GP+ V E GAPL PA G+C G Q HQ G Sbjct: 69 GFILSGGPSSVYEAGAPLA----PAYIFESKLPVLGICYGMQAITHQLG 113
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 28.5 bits (62), Expect = 7.2 Identities = 21/88 (23%), Positives = 38/88 (43%) Frame = +2 Query: 14 NFYYSRRNGDDSLDPTPTGGSLYLTQQLTGSNS*SHAYITVHELSTHQKTTLQTRI*ADC 193 N Y + S++P P L+ QQ+T + S + A S+ +Q + Sbjct: 472 NLYQHSTSAGSSVNPPPPPPPLF-QQQMTTTTSSAAASFVEQPWSSSSSRAIQPATTSAS 530 Query: 194 RSSGRTKSASAVTEMSTVGLSSAQTSMA 277 SS + S+ A +S +G +S+ + A Sbjct: 531 SSSSSSASSPAAAVVSAIGSASSPAASA 558
>UBP2_HUMAN (O75604) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)| (Ubiquitin thioesterase 2) (Ubiquitin-specific-processing protease 2) (Deubiquitinating enzyme 2) (41 kDa ubiquitin-specific protease) Length = 605 Score = 28.5 bits (62), Expect = 7.2 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Frame = +2 Query: 104 SNS*SHAYITVHELSTHQKTTLQTRI*ADCRSSG----RTKSASAVTEMSTVGLSSAQTS 271 S + +HA ++ +S H TT+ A CRS G T + S+VT MS+ S +TS Sbjct: 533 SENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSS---SQVRTS 589 Query: 272 MA 277 A Sbjct: 590 DA 591
>LPXD_VIBCH (Q9KPW2) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase| (EC 2.3.1.-) Length = 351 Score = 28.1 bits (61), Expect = 9.4 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%) Frame = +1 Query: 145 VHPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGPQLGANL---DGAVDGVRHEVADEV 315 + PS + D LG H VSIG + ++ G QLG N+ G G + + D Sbjct: 100 IAPSAVIAEDAKLG-------HNVSIGANAVIESGVQLGDNVVIGAGCFIGKQARLGDNT 152 Query: 316 LVDGRILVHRHKRLLGQD 369 + + ++ HK +G D Sbjct: 153 KLWANVTIY-HKVEIGSD 169
>UVRC_STRCO (Q9Z512) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 728 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = -3 Query: 430 GQLLDDGPAGVEEVGAPLRL-HPDPAGVCDGGQ 335 GQ L DGPA ++ G P R +P V DGGQ Sbjct: 518 GQELTDGPALKDDDGRPKRFAYPPQLVVVDGGQ 550
>FIT1_YEAST (Q04433) Facilitator of iron transport 1 precursor| Length = 528 Score = 28.1 bits (61), Expect = 9.4 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%) Frame = +2 Query: 197 SSGRTKSASAVTEMSTV-------GLSSAQTSMAPWTGSDMKLLMRSWLMGASLSTV 346 SS TK S++T + T G SS + +TG+ + + LMGA+L+ V Sbjct: 469 SSASTKMVSSITRVQTTTAGIFTNGKSSTTPQIVNYTGAADSIAAGTGLMGAALAAV 525 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,687,954 Number of Sequences: 219361 Number of extensions: 1073884 Number of successful extensions: 3548 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3432 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3547 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
