ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast59b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HMEN_ANOGA (O02491) Segmentation polarity homeobox protein engra... 30 1.3
2BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein sh... 30 1.7
3UREE_YERPS (P52317) Urease accessory protein ureE 29 2.9
4VAC7_YEAST (P53950) Vacuolar segregation protein 7 29 3.8
5UREE_YERIN (Q6UR59) Urease accessory protein ureE 28 4.9
6RCNA_SALPA (Q5PEQ4) Nickel/cobalt efflux system rcnA 28 6.4

>HMEN_ANOGA (O02491) Segmentation polarity homeobox protein engrailed|
          Length = 596

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 69  NHQEPKHSQDHNHTHAQHSTSTVITQQL*PPSSLT 173
           +HQ P H Q  +H H QH      + Q  PP+S++
Sbjct: 94  HHQHPHHHQLPHHPHHQHHPQQQPSPQTSPPASIS 128



to top

>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)|
          Length = 1206

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 60  AGINHQEPKHSQDHNHTHAQHSTSTVITQQ 149
           AG +H +P H   H+H H QH       QQ
Sbjct: 298 AGSHHHQPHHHHHHHHHHHQHHNHQQQQQQ 327



to top

>UREE_YERPS (P52317) Urease accessory protein ureE|
          Length = 231

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 51  IHLAGINHQEPKHSQDHNHTHAQH 122
           IH  G  H    H  DH+H+H  H
Sbjct: 202 IHSHGEGHSHGDHDHDHSHSHGDH 225



to top

>VAC7_YEAST (P53950) Vacuolar segregation protein 7|
          Length = 1165

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 22  GKNISNHQSSYI*QASTIKNQSTAKITTTHTHNIALAPLLHNNSDPQAHSRSKTGS 189
           GKN  N  +S I   ST    STA + +T       A +  +N+D   +++ KT S
Sbjct: 321 GKNERNDDTSKICTTSTKTAPSTAPLGSTDNTQALTASVSSSNADNHNNNKKKTSS 376



to top

>UREE_YERIN (Q6UR59) Urease accessory protein ureE|
          Length = 226

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 51  IHLAGINHQEPKHSQDHNHTHAQHST 128
           +H+  I+     HS DH+H+H  H +
Sbjct: 197 LHIHSIHSHGDGHSHDHDHSHGDHDS 222



to top

>RCNA_SALPA (Q5PEQ4) Nickel/cobalt efflux system rcnA|
          Length = 274

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 57  LAGINHQEPKHSQDHNHTHAQH 122
           LAG +H +  H  DH+H H  H
Sbjct: 117 LAGNHHHDHDHDHDHDHDHHGH 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,943,266
Number of Sequences: 219361
Number of extensions: 410397
Number of successful extensions: 1418
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top