ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast59a05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017440.1| Zea mays clone EL01N0404H05.c mRNA sequence Length = 511 Score = 295 bits (149), Expect = 6e-77 Identities = 207/225 (92%), Gaps = 1/225 (0%) Strand = Plus / Plus Query: 181 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 240 |||||| ||||| |||||||||||||||||||| ||||||||| ||||| |||||||| Sbjct: 287 gcgctctacgcccgggagatcggccatgccgagtgccgccagcatctccatggtctcctt 346 Query: 241 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 300 ||||||||||||||| |||||||| || || |||||||| |||||||||||||||||||| Sbjct: 347 gtcgacgcggatctcttcgacctcgagcgctgacttctccgggacgaagtccatgcggcg 406 Query: 301 ttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 || ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| Sbjct: 407 ctcccgctcctcctcctgcagcttgagcgagatgccacggacggggccccgctggatgcg 466 Query: 361 gcgcatcagatgggtggtgaagccggc-caccttgttgcggaggc 404 ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 467 gcgcatcagatgggtggtgaagccggcacaccttgttgcggaggc 511
>ref|XM_468565.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 435 Score = 287 bits (145), Expect = 1e-74 Identities = 205/225 (91%) Strand = Plus / Minus Query: 181 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 240 |||| ||||||| ||||| ||||||||||||||| | | |||||||| | |||||||| Sbjct: 357 gcgcacgacgccggggaggtcggccatgccgagggaggtgagcatgtcgagggtctcctt 298 Query: 241 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 300 |||||||||||| ||||||||||| || |||||| | || |||||||||||||||||||| Sbjct: 297 gtcgacgcggatgtcgtcgacctcgagcgccgacctgtccgggacgaagtccatgcggcg 238 Query: 301 ttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 237 ctcgcgctcctcctcctggagcttgagggagatgccgcggacggggccgcgctggatgcg 178 Query: 361 gcgcatcagatgggtggtgaagccggccaccttgttgcggaggcg 405 ||||||||| |||||| |||||||||||||||||||||||||||| Sbjct: 177 gcgcatcaggtgggtgctgaagccggccaccttgttgcggaggcg 133
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 287 bits (145), Expect = 1e-74 Identities = 205/225 (91%) Strand = Plus / Plus Query: 181 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 240 |||| ||||||| ||||| ||||||||||||||| | | |||||||| | |||||||| Sbjct: 537809 gcgcacgacgccggggaggtcggccatgccgagggaggtgagcatgtcgagggtctcctt 537868 Query: 241 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 300 |||||||||||| ||||||||||| || |||||| | || |||||||||||||||||||| Sbjct: 537869 gtcgacgcggatgtcgtcgacctcgagcgccgacctgtccgggacgaagtccatgcggcg 537928 Query: 301 ttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 537929 ctcgcgctcctcctcctggagcttgagggagatgccgcggacggggccgcgctggatgcg 537988 Query: 361 gcgcatcagatgggtggtgaagccggccaccttgttgcggaggcg 405 ||||||||| |||||| |||||||||||||||||||||||||||| Sbjct: 537989 gcgcatcaggtgggtgctgaagccggccaccttgttgcggaggcg 538033
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 287 bits (145), Expect = 1e-74 Identities = 205/225 (91%) Strand = Plus / Plus Query: 181 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 240 |||| ||||||| ||||| ||||||||||||||| | | |||||||| | |||||||| Sbjct: 537807 gcgcacgacgccggggaggtcggccatgccgagggaggtgagcatgtcgagggtctcctt 537866 Query: 241 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 300 |||||||||||| ||||||||||| || |||||| | || |||||||||||||||||||| Sbjct: 537867 gtcgacgcggatgtcgtcgacctcgagcgccgacctgtccgggacgaagtccatgcggcg 537926 Query: 301 ttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 537927 ctcgcgctcctcctcctggagcttgagggagatgccgcggacggggccgcgctggatgcg 537986 Query: 361 gcgcatcagatgggtggtgaagccggccaccttgttgcggaggcg 405 ||||||||| |||||| |||||||||||||||||||||||||||| Sbjct: 537987 gcgcatcaggtgggtgctgaagccggccaccttgttgcggaggcg 538031
>gb|AC105733.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0043C10, complete sequence Length = 108688 Score = 287 bits (145), Expect = 1e-74 Identities = 205/225 (91%) Strand = Plus / Minus Query: 181 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 240 |||| ||||||| ||||| ||||||||||||||| | | |||||||| | |||||||| Sbjct: 78109 gcgcacgacgccggggaggtcggccatgccgagggaggtgagcatgtcgagggtctcctt 78050 Query: 241 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 300 |||||||||||| ||||||||||| || |||||| | || |||||||||||||||||||| Sbjct: 78049 gtcgacgcggatgtcgtcgacctcgagcgccgacctgtccgggacgaagtccatgcggcg 77990 Query: 301 ttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 77989 ctcgcgctcctcctcctggagcttgagggagatgccgcggacggggccgcgctggatgcg 77930 Query: 361 gcgcatcagatgggtggtgaagccggccaccttgttgcggaggcg 405 ||||||||| |||||| |||||||||||||||||||||||||||| Sbjct: 77929 gcgcatcaggtgggtgctgaagccggccaccttgttgcggaggcg 77885
>gb|AY109334.1| Zea mays CL3259_2 mRNA sequence Length = 1585 Score = 264 bits (133), Expect = 2e-67 Identities = 202/225 (89%) Strand = Plus / Plus Query: 181 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 240 |||||| ||||| || || ||||||||||||||| || ||||| ||||| |||||||| Sbjct: 305 gcgctcaacgccgggcaggtcggccatgccgagggcagcgagcatctccatggtctcctt 364 Query: 241 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 300 ||||||||||||||| |||||||| || || |||||||| || ||||||||||||||||| Sbjct: 365 gtcgacgcggatctcttcgacctcgagcgcggacttctccggcacgaagtccatgcggcg 424 Query: 301 ttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 425 ctcgcgctcctcctcctgcagcttgagcgagatgccgcggactgggccgcgctggatgcg 484 Query: 361 gcgcatcagatgggtggtgaagccggccaccttgttgcggaggcg 405 ||||||||| ||||| ||||||| |||||||||||||||||||| Sbjct: 485 gcgcatcaggtgggtactgaagccagccaccttgttgcggaggcg 529
>ref|NM_196466.1| Oryza sativa (japonica cultivar-group) contains similarity to 40S ribosomal protein S17 (OSJNBa0015J03.22), mRNA Length = 426 Score = 260 bits (131), Expect = 3e-66 Identities = 197/219 (89%) Strand = Plus / Minus Query: 181 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 240 |||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 357 gcgctcgacgccggggaggtcggccatgccgagcgcggcgagcatctccatggtctcctt 298 Query: 241 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 300 ||||||||||||||| || ||||| || ||||||||||| |||||||||||||||||||| Sbjct: 297 gtcgacgcggatctcctccacctcgagcgccgacttctccgggacgaagtccatgcggcg 238 Query: 301 ttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 ||||||||||||||||||||||| || |||||||| || ||||| |||||||||||||| Sbjct: 237 ctcgcgctcctcctcctgcagcttcagcgagatgccccgcacgggcccgcgctggatgcg 178 Query: 361 gcgcatcagatgggtggtgaagccggccaccttgttgcg 399 ||||||||| ||||||||||| ||||||||||||||||| Sbjct: 177 gcgcatcaggtgggtggtgaacccggccaccttgttgcg 139
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 260 bits (131), Expect = 3e-66 Identities = 197/219 (89%) Strand = Plus / Minus Query: 181 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 240 |||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 13815834 gcgctcgacgccggggaggtcggccatgccgagcgcggcgagcatctccatggtctcctt 13815775 Query: 241 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 300 ||||||||||||||| || ||||| || ||||||||||| |||||||||||||||||||| Sbjct: 13815774 gtcgacgcggatctcctccacctcgagcgccgacttctccgggacgaagtccatgcggcg 13815715 Query: 301 ttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 ||||||||||||||||||||||| || |||||||| || ||||| |||||||||||||| Sbjct: 13815714 ctcgcgctcctcctcctgcagcttcagcgagatgccccgcacgggcccgcgctggatgcg 13815655 Query: 361 gcgcatcagatgggtggtgaagccggccaccttgttgcg 399 ||||||||| ||||||||||| ||||||||||||||||| Sbjct: 13815654 gcgcatcaggtgggtggtgaacccggccaccttgttgcg 13815616
>gb|AC027659.1| Oryza sativa (japonica cultivar-group) BAC nbxb0015J03 chromosome 10, complete sequence Length = 172742 Score = 260 bits (131), Expect = 3e-66 Identities = 197/219 (89%) Strand = Plus / Minus Query: 181 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 240 |||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 142363 gcgctcgacgccggggaggtcggccatgccgagcgcggcgagcatctccatggtctcctt 142304 Query: 241 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 300 ||||||||||||||| || ||||| || ||||||||||| |||||||||||||||||||| Sbjct: 142303 gtcgacgcggatctcctccacctcgagcgccgacttctccgggacgaagtccatgcggcg 142244 Query: 301 ttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 ||||||||||||||||||||||| || |||||||| || ||||| |||||||||||||| Sbjct: 142243 ctcgcgctcctcctcctgcagcttcagcgagatgccccgcacgggcccgcgctggatgcg 142184 Query: 361 gcgcatcagatgggtggtgaagccggccaccttgttgcg 399 ||||||||| ||||||||||| ||||||||||||||||| Sbjct: 142183 gcgcatcaggtgggtggtgaacccggccaccttgttgcg 142145
>dbj|AK059434.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F09, full insert sequence Length = 736 Score = 260 bits (131), Expect = 3e-66 Identities = 197/219 (89%) Strand = Plus / Minus Query: 181 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 240 |||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 454 gcgctcgacgccggggaggtcggccatgccgagcgcggcgagcatctccatggtctcctt 395 Query: 241 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 300 ||||||||||||||| || ||||| || ||||||||||| |||||||||||||||||||| Sbjct: 394 gtcgacgcggatctcctccacctcgagcgccgacttctccgggacgaagtccatgcggcg 335 Query: 301 ttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 ||||||||||||||||||||||| || |||||||| || ||||| |||||||||||||| Sbjct: 334 ctcgcgctcctcctcctgcagcttcagcgagatgccccgcacgggcccgcgctggatgcg 275 Query: 361 gcgcatcagatgggtggtgaagccggccaccttgttgcg 399 ||||||||| ||||||||||| ||||||||||||||||| Sbjct: 274 gcgcatcaggtgggtggtgaacccggccaccttgttgcg 236
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 260 bits (131), Expect = 3e-66 Identities = 197/219 (89%) Strand = Plus / Minus Query: 181 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 240 |||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 13823176 gcgctcgacgccggggaggtcggccatgccgagcgcggcgagcatctccatggtctcctt 13823117 Query: 241 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 300 ||||||||||||||| || ||||| || ||||||||||| |||||||||||||||||||| Sbjct: 13823116 gtcgacgcggatctcctccacctcgagcgccgacttctccgggacgaagtccatgcggcg 13823057 Query: 301 ttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 ||||||||||||||||||||||| || |||||||| || ||||| |||||||||||||| Sbjct: 13823056 ctcgcgctcctcctcctgcagcttcagcgagatgccccgcacgggcccgcgctggatgcg 13822997 Query: 361 gcgcatcagatgggtggtgaagccggccaccttgttgcg 399 ||||||||| ||||||||||| ||||||||||||||||| Sbjct: 13822996 gcgcatcaggtgggtggtgaacccggccaccttgttgcg 13822958
>gb|BT018883.1| Zea mays clone EL01T0205A07.d mRNA sequence Length = 1280 Score = 256 bits (129), Expect = 5e-65 Identities = 201/225 (89%) Strand = Plus / Minus Query: 181 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 240 |||||| ||||| || || ||||||||||||||| || ||||| ||||| |||||||| Sbjct: 1014 gcgctcaacgccgggcaggtcggccatgccgagggcagcgagcatctccatggtctcctt 955 Query: 241 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 300 ||||||||||||||| |||||||| || || |||||||| || ||||||||| ||||||| Sbjct: 954 gtcgacgcggatctcttcgacctcgagcgcggacttctccggcacgaagtccctgcggcg 895 Query: 301 ttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 894 ctcgcgctcctcctcctgcagcttgagcgagatgccgcggactgggccgcgctggatgcg 835 Query: 361 gcgcatcagatgggtggtgaagccggccaccttgttgcggaggcg 405 ||||||||| ||||| ||||||| |||||||||||||||||||| Sbjct: 834 gcgcatcaggtgggtactgaagccagccaccttgttgcggaggcg 790
>ref|XM_956742.1| Neurospora crassa OR74A 40S RIBOSOMAL PROTEIN S17 (CRP3) (NCU07014.1) partial mRNA Length = 441 Score = 105 bits (53), Expect = 1e-19 Identities = 89/101 (88%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcggcgc 364 |||||||||||||||||||||| |||||| |||||||||||||| |||||||| || | Sbjct: 233 cgctcctcctcctgcagcttgaaggagataccgcggacggggccacgctggatacgcttc 174 Query: 365 atcagatgggtggtgaagccggccaccttgttgcggaggcg 405 |||| ||||||||| ||||||| | ||||||||||||||| Sbjct: 173 atcaagtgggtggtgtagccggcaatcttgttgcggaggcg 133
>ref|XM_327299.1| Neurospora crassa OR74A 40S RIBOSOMAL PROTEIN S17 (CRP3) (NCU07014.1) partial mRNA Length = 441 Score = 105 bits (53), Expect = 1e-19 Identities = 89/101 (88%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcggcgc 364 |||||||||||||||||||||| |||||| |||||||||||||| |||||||| || | Sbjct: 233 cgctcctcctcctgcagcttgaaggagataccgcggacggggccacgctggatacgcttc 174 Query: 365 atcagatgggtggtgaagccggccaccttgttgcggaggcg 405 |||| ||||||||| ||||||| | ||||||||||||||| Sbjct: 173 atcaagtgggtggtgtagccggcaatcttgttgcggaggcg 133
>ref|XM_809649.1| Trypanosoma cruzi strain CL Brener 40S ribosomal protein S17 (Tc00.1047053508827.70) partial mRNA Length = 591 Score = 95.6 bits (48), Expect = 1e-16 Identities = 60/64 (93%) Strand = Plus / Minus Query: 288 agtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggc 347 ||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||| Sbjct: 415 agtccatgcggcgctcgcgctcctcctcctgcagcttcagcgagatgccacggacggggc 356 Query: 348 cgcg 351 |||| Sbjct: 355 cgcg 352
>ref|XM_809656.1| Trypanosoma cruzi strain CL Brener 40S ribosomal protein S17 (Tc00.1047053508827.79) partial mRNA Length = 426 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Minus Query: 288 agtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggc 347 ||||||||||||| ||||||||||||||||||||||| || |||||||| ||||| |||| Sbjct: 250 agtccatgcggcgctcgcgctcctcctcctgcagcttcagcgagatgccacggacagggc 191 Query: 348 cgcg 351 |||| Sbjct: 190 cgcg 187
>gb|M63879.1|NEUCRP3 Neurospora crassa ribosomal protein gene, complete cds Length = 1714 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcggcgc 364 |||||||||||||||||||||| |||||| |||||||||||||| |||||||| || | Sbjct: 1194 cgctcctcctcctgcagcttgaaggagataccgcggacggggccacgctggatacgcttc 1135 Query: 365 atcagatgggtggtgaagccggc 387 |||| ||||||||| ||||||| Sbjct: 1134 atcaagtgggtggtgtagccggc 1112
>emb|BX930857.2| Gallus gallus finished cDNA, clone ChEST970j5 Length = 472 Score = 67.9 bits (34), Expect = 2e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||| | |||||| || ||||||||||| ||||||||||| Sbjct: 255 ctcctcctcctgcagcttaatggagataccccggacggggccccgctggatgcg 202
>ref|NM_204217.1| Gallus gallus ribosomal protein S17 (RPS17), mRNA Length = 485 Score = 67.9 bits (34), Expect = 2e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||| | |||||| || ||||||||||| ||||||||||| Sbjct: 268 ctcctcctcctgcagcttaatggagataccccggacggggccccgctggatgcg 215
>emb|BX933819.1| Gallus gallus finished cDNA, clone ChEST38m20 Length = 707 Score = 67.9 bits (34), Expect = 2e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||| | |||||| || ||||||||||| ||||||||||| Sbjct: 490 ctcctcctcctgcagcttaatggagataccccggacggggccccgctggatgcg 437
>gb|AY215074.1| Gallus gallus ribosomal protein S17 mRNA, complete cds Length = 485 Score = 67.9 bits (34), Expect = 2e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||| | |||||| || ||||||||||| ||||||||||| Sbjct: 268 ctcctcctcctgcagcttaatggagataccccggacggggccccgctggatgcg 215
>emb|X07257.1|GGRPS17 Chicken mRNA for ribosomal protein S17 Length = 430 Score = 67.9 bits (34), Expect = 2e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||| | |||||| || ||||||||||| ||||||||||| Sbjct: 213 ctcctcctcctgcagcttaatggagataccccggacggggccccgctggatgcg 160
>ref|XM_658491.1| Aspergillus nidulans FGSC A4 40S ribosomal protein S17 (AN5979.2), mRNA Length = 420 Score = 65.9 bits (33), Expect = 9e-08 Identities = 48/53 (90%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggat 357 |||||||||||||| ||||||| |||||| |||||||| ||||| |||||||| Sbjct: 233 cgctcctcctcctgtagcttgaaggagataccgcggacagggccacgctggat 181
>ref|XM_750270.1| Aspergillus fumigatus Af293 ribosomal protein S17 crp3 (Afu2g10300) partial mRNA Length = 639 Score = 65.9 bits (33), Expect = 9e-08 Identities = 48/53 (90%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggat 357 |||||||||||||||||||||| ||||| |||||||| ||||| |||||||| Sbjct: 410 cgctcctcctcctgcagcttgaaagagataccgcggacagggccacgctggat 358
>ref|NM_001036758.1| Arabidopsis thaliana structural constituent of ribosome AT5G04800 transcript variant AT5G04800.4 mRNA, complete cds Length = 822 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 287 aagtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggac 342 ||||||||||||||||| |||||||| ||||| |||||||| ||||| || ||||| Sbjct: 424 aagtccatgcggcgttcacgctcctcttcctgaagcttgagtgagattccacggac 369
>ref|NM_120562.2| Arabidopsis thaliana structural constituent of ribosome AT5G04800 transcript variant AT5G04800.1 mRNA, complete cds Length = 745 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 287 aagtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggac 342 ||||||||||||||||| |||||||| ||||| |||||||| ||||| || ||||| Sbjct: 364 aagtccatgcggcgttcacgctcctcttcctgaagcttgagtgagattccacggac 309
>ref|NM_001036757.1| Arabidopsis thaliana structural constituent of ribosome AT5G04800 transcript variant AT5G04800.3 mRNA, complete cds Length = 768 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 287 aagtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggac 342 ||||||||||||||||| |||||||| ||||| |||||||| ||||| || ||||| Sbjct: 370 aagtccatgcggcgttcacgctcctcttcctgaagcttgagtgagattccacggac 315
>ref|NM_180434.1| Arabidopsis thaliana structural constituent of ribosome AT5G04800 transcript variant AT5G04800.2 mRNA, complete cds Length = 751 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 287 aagtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggac 342 ||||||||||||||||| |||||||| ||||| |||||||| ||||| || ||||| Sbjct: 370 aagtccatgcggcgttcacgctcctcttcctgaagcttgagtgagattccacggac 315
>gb|BT000851.1| Arabidopsis thaliana At5g04800/MUK11_12 mRNA, complete cds Length = 426 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 287 aagtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggac 342 ||||||||||||||||| |||||||| ||||| |||||||| ||||| || ||||| Sbjct: 251 aagtccatgcggcgttcacgctcctcttcctgaagcttgagtgagattccacggac 196
>emb|AL162972.1|ATT1E3 Arabidopsis thaliana DNA chromosome 5, BAC clone T1E3 (ESSA project) Length = 83485 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 287 aagtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggac 342 ||||||||||||||||| |||||||| ||||| |||||||| ||||| || ||||| Sbjct: 79380 aagtccatgcggcgttcacgctcctcttcctgaagcttgagtgagattccacggac 79325
>gb|AF361843.1| Arabidopsis thaliana AT5g04800/MUK11_12 mRNA, complete cds Length = 723 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 287 aagtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggac 342 ||||||||||||||||| |||||||| ||||| |||||||| ||||| || ||||| Sbjct: 369 aagtccatgcggcgttcacgctcctcttcctgaagcttgagtgagattccacggac 314
>ref|NM_001013455.1| Danio rerio zgc:114188 (zgc:114188), mRNA Length = 490 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 302 tcgcgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggat 357 ||||||||||||||||||||||||| |||||| || | ||| || ||||||||||| Sbjct: 257 tcgcgctcctcctcctgcagcttgatggagattcctctgaccggcccgcgctggat 202
>gb|AY087862.1| Arabidopsis thaliana clone 39018 mRNA, complete sequence Length = 718 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 287 aagtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggac 342 ||||||||||||||||| |||||||| ||||| |||||||| ||||| || ||||| Sbjct: 364 aagtccatgcggcgttcacgctcctcttcctgaagcttgagtgagattccacggac 309
>gb|BC091562.1| Danio rerio zgc:114188, mRNA (cDNA clone MGC:114188 IMAGE:7431996), complete cds Length = 490 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 302 tcgcgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggat 357 ||||||||||||||||||||||||| |||||| || | ||| || ||||||||||| Sbjct: 257 tcgcgctcctcctcctgcagcttgatggagattcctctgaccggcccgcgctggat 202
>dbj|AB008271.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUK11 Length = 79073 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 287 aagtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggac 342 ||||||||||||||||| |||||||| ||||| |||||||| ||||| || ||||| Sbjct: 36993 aagtccatgcggcgttcacgctcctcttcctgaagcttgagtgagattccacggac 36938
>emb|CR734206.2|CNS0GTAL Tetraodon nigroviridis full-length cDNA Length = 463 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 252 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 199
>emb|CR733885.2|CNS0GT1O Tetraodon nigroviridis full-length cDNA Length = 468 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 252 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 199
>emb|CR721645.2|CNS0GJRN Tetraodon nigroviridis full-length cDNA Length = 461 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 255 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 202
>emb|CR716561.2|CNS0GFUI Tetraodon nigroviridis full-length cDNA Length = 440 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 229 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 176
>emb|CR715007.2|CNS0GENF Tetraodon nigroviridis full-length cDNA Length = 510 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 292 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 239
>emb|CR713801.2|CNS0GDPX Tetraodon nigroviridis full-length cDNA Length = 470 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 254 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 201
>emb|CR709441.2|CNS0GACT Tetraodon nigroviridis full-length cDNA Length = 471 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 255 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 202
>emb|CR699586.2|CNS0G2R2 Tetraodon nigroviridis full-length cDNA Length = 468 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 255 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 202
>emb|CR697355.2|CNS0G113 Tetraodon nigroviridis full-length cDNA Length = 466 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 255 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 202
>emb|CR696871.2|CNS0G0NN Tetraodon nigroviridis full-length cDNA Length = 996 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 229 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 176
>emb|CR694883.2|CNS0FZ4F Tetraodon nigroviridis full-length cDNA Length = 466 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 255 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 202
>emb|CR688673.2|CNS0FUBX Tetraodon nigroviridis full-length cDNA Length = 466 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 255 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 202
>emb|CR687232.2|CNS0FT7W Tetraodon nigroviridis full-length cDNA Length = 468 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 255 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 202
>emb|CR684996.2|CNS0FRHS Tetraodon nigroviridis full-length cDNA Length = 993 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 229 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 176
>emb|CR678165.2|CNS0FM89 Tetraodon nigroviridis full-length cDNA Length = 466 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 255 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 202
>emb|CR674580.1|CNS0FJH6 Tetraodon nigroviridis full-length cDNA Length = 1404 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 970 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 917
>emb|CR663962.2|CNS0FBA8 Tetraodon nigroviridis full-length cDNA Length = 466 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 255 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 202
>emb|CR655202.2|CNS0F4IW Tetraodon nigroviridis full-length cDNA Length = 445 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 229 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 176
>emb|CR656244.2|CNS0F5BU Tetraodon nigroviridis full-length cDNA Length = 468 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 255 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 202
>emb|CR651538.2|CNS0F1P4 Tetraodon nigroviridis full-length cDNA Length = 466 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 255 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 202
>emb|CR632947.2|CNS0ENCP Tetraodon nigroviridis full-length cDNA Length = 445 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| ||||||||| | ||| || || ||||||||||| Sbjct: 229 ctcctcctcctgcagcttgatggagatgcccctgactggaccacgctggatgcg 176
>ref|XM_361640.1| Magnaporthe grisea 70-15 hypothetical protein (MG04114.4) partial mRNA Length = 447 Score = 58.0 bits (29), Expect = 2e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcggcgc 364 |||||||||||||| ||||||| |||||| || |||||||| || ||||| || || | Sbjct: 233 cgctcctcctcctgaagcttgaaggagataccacggacgggaccacgctgaatacgcttc 174 Query: 365 atcagatgggtggtgaagccggccaccttgttgcggaggcg 405 |||| ||||||||| | ||||| | ||||||||| ||||| Sbjct: 173 atcaagtgggtggtgtaaccggcaatcttgttgcgcaggcg 133
>ref|XM_751922.1| Ustilago maydis 521 hypothetical protein (UM00868.1) partial mRNA Length = 1200 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcggcgc 364 |||||||||||||| ||||||| ||||| ||||||||||| || |||||||| || | Sbjct: 998 cgctcctcctcctgaagcttgaacgagataccgcggacgggaccacgctggatacgcttc 939 Query: 365 atcagatgggtggtgaa 381 || || ||||||||||| Sbjct: 938 ataaggtgggtggtgaa 922
>gb|AF548334.1| Branchiostoma belcheri ribosomal protein S17 mRNA, complete cds Length = 614 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcggcgcat 366 |||||||||||||||||||| |||||| || ||||| || || |||||||| || ||| Sbjct: 239 ctcctcctcctgcagcttgatggagataccacggactggtcctcgctggatacgcttcat 180 Query: 367 cagatgggt 375 ||||||||| Sbjct: 179 cagatgggt 171
>dbj|AB226307.1| Aspergillus oryzae cDNA, contig sequence: AoEST3169 Length = 860 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggat 357 |||||||||||||| ||||||| |||||| || || || |||||||||||||| Sbjct: 285 cgctcctcctcctggagcttgaaggagataccacgaacagggccgcgctggat 233
>dbj|AB224095.1| Aspergillus oryzae cDNA, contig sequence: AoEST0937 Length = 823 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggat 357 |||||||||||||| ||||||| |||||| || || || |||||||||||||| Sbjct: 345 cgctcctcctcctggagcttgaaggagataccacgaacagggccgcgctggat 293
>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 Length = 1725576 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 305 cgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggat 357 |||||||||||||| ||||||| |||||| || || || |||||||||||||| Sbjct: 272183 cgctcctcctcctggagcttgaaggagataccacgaacagggccgcgctggat 272235
>emb|BX829605.1|CNS0A03W Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB24ZC11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1247 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 287 aagtccatgcggcgttcgcgctcctcctcctgcagcttgag 327 ||||||||||||||||| |||||||| ||||| |||||||| Sbjct: 944 aagtccatgcggcgttcacgctcctcttcctgaagcttgag 904
>gb|DQ213966.1| Taeniopygia guttata clone 0064P0014G08 ribosomal protein S17 variant 1-like mRNA, complete sequence Length = 489 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggat 357 |||||||||||| || |||| ||||||||||||||| ||||| | |||||| Sbjct: 253 ctcctcctcctgtagtttgatggagatgccgcggacagggcccctctggat 203
>gb|DQ213965.1| Taeniopygia guttata clone 0061P0023H07 ribosomal protein S17 variant 1-like mRNA, complete sequence Length = 504 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggat 357 |||||||||||| || |||| ||||||||||||||| ||||| | |||||| Sbjct: 268 ctcctcctcctgtagtttgatggagatgccgcggacagggcccctctggat 218
>gb|DQ213964.1| Taeniopygia guttata clone 0058P0046B02 ribosomal protein S17 variant 1-like mRNA, complete sequence Length = 503 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggat 357 |||||||||||| || |||| ||||||||||||||| ||||| | |||||| Sbjct: 268 ctcctcctcctgtagtttgatggagatgccgcggacagggcccctctggat 218
>gb|DQ213963.1| Taeniopygia guttata clone 0058P0023E05 ribosomal protein S17 variant 1-like mRNA, complete sequence Length = 503 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggat 357 |||||||||||| || |||| ||||||||||||||| ||||| | |||||| Sbjct: 268 ctcctcctcctgtagtttgatggagatgccgcggacagggcccctctggat 218
>gb|DQ213962.1| Taeniopygia guttata clone 0063P0001H04 ribosomal protein S17 variant 2-like mRNA, complete sequence Length = 551 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggat 357 |||||||||||| || |||| ||||||||||||||| ||||| | |||||| Sbjct: 315 ctcctcctcctgtagtttgatggagatgccgcggacagggcccctctggat 265
>gb|AF402826.1| Ictalurus punctatus 40S ribosomal protein S17 mRNA, complete cds Length = 459 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcggcgc 364 ||||||||||||||||| |||| ||||||||| | ||| || || | ||||||||| | Sbjct: 245 cgctcctcctcctgcagtttgatggagatgcctctgactggccctctctggatgcgcttc 186 Query: 365 atcagatgggt 375 ||||||||||| Sbjct: 185 atcagatgggt 175
>ref|XM_385816.1| Gibberella zeae PH-1 chromosome 3 RS17_NEUCR 40S ribosomal protein S17 (CRP3) (FG05640.1) partial mRNA Length = 468 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctg 354 |||||||||||||| ||||||| |||||| || ||||| ||||| ||||| Sbjct: 233 cgctcctcctcctgaagcttgaaggagataccacggacagggccacgctg 184
>emb|CR681446.2|CNS0FOR6 Tetraodon nigroviridis full-length cDNA Length = 472 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||||||||||||||| || |||||| | ||| || || ||||||||||| Sbjct: 261 ctcctcctcctgcagcttgatggggatgcccctgactggaccacgctggatgcg 208
>gb|DQ066305.1| Ixodes scapularis isolate IS-6-12L-68 ribosomal protein S17 mRNA, partial cds Length = 393 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||| ||||| ||||||| ||||||||| || ||||| || ||||||||||| Sbjct: 231 ctcctcttcctggagcttgatggagatgccacgcacgggaccacgctggatgcg 178
>gb|AY232491.1| Coturnix coturnix ribosomal protein S17 mRNA, complete cds Length = 484 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 311 tcctcctgcagcttgagggagatgccgcggacggggccgcgctggatgcg 360 |||||||| || || | |||||| |||||||| ||||||||||||||||| Sbjct: 261 tcctcctgtagtttaatggagataccgcggactgggccgcgctggatgcg 212
>gb|AY826141.1| Aedes albopictus clone AL_160 ribosomal protein S17 mRNA, complete cds Length = 318 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 302 tcgcgctcctcctcctgcagcttgagggagatgccgcggac 342 ||||| ||||||||||||||||||| |||||| || ||||| Sbjct: 161 tcgcgttcctcctcctgcagcttgatggagataccacggac 121
>ref|XM_505414.1| Yarrowia lipolytica CLIB122, YALI0F14465g predicted mRNA Length = 417 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagatgccgcggacggg 345 |||||||||||||| ||||||| |||||| || |||||||| Sbjct: 233 cgctcctcctcctgaagcttgaaggagatacctcggacggg 193
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagatgccgcggacggg 345 |||||||||||||| ||||||| |||||| || |||||||| Sbjct: 1930671 cgctcctcctcctgaagcttgaaggagatacctcggacggg 1930631
>ref|XM_824152.1| Trypanosoma brucei TREU927 40S ribosomal protein S17 (Tb11.01.3676) partial mRNA Length = 429 Score = 48.1 bits (24), Expect = 0.022 Identities = 54/64 (84%) Strand = Plus / Minus Query: 288 agtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggc 347 ||||||||||||| || |||||||| || ||||| || || ||||| || ||||| |||| Sbjct: 250 agtccatgcggcgctcacgctcctcttcttgcagtttcagcgagataccacggacagggc 191 Query: 348 cgcg 351 |||| Sbjct: 190 cgcg 187
>ref|XM_824151.1| Trypanosoma brucei TREU927 40S ribosomal protein S17 (Tb11.01.3675) partial mRNA Length = 429 Score = 48.1 bits (24), Expect = 0.022 Identities = 54/64 (84%) Strand = Plus / Minus Query: 288 agtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggc 347 ||||||||||||| || |||||||| || ||||| || || ||||| || ||||| |||| Sbjct: 250 agtccatgcggcgctcacgctcctcttcttgcagtttcagcgagataccacggacagggc 191 Query: 348 cgcg 351 |||| Sbjct: 190 cgcg 187
>ref|XM_762597.1| Giardia lamblia ATCC 50803 ribosomal protein S17 (GLP_2_8281_8694) partial mRNA Length = 414 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Minus Query: 302 tcgcgctcctcctcctgcagcttgagggagatgccgcggacggg 345 ||||||||||||||||| ||| | || ||||||||| ||||||| Sbjct: 245 tcgcgctcctcctcctggagcctcagagagatgccgtggacggg 202
>gb|AY909424.1| Siniperca chuatsi clone C133 40S ribosomal protein S17 mRNA, complete cds Length = 498 Score = 48.1 bits (24), Expect = 0.022 Identities = 30/32 (93%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagatgcc 336 ||||||||||||||||| |||| ||||||||| Sbjct: 264 cgctcctcctcctgcagtttgatggagatgcc 233
>gb|AY927787.2| Aedes aegypti 40S ribosomal protein S17 mRNA, complete cds Length = 600 Score = 46.1 bits (23), Expect = 0.088 Identities = 32/35 (91%) Strand = Plus / Minus Query: 308 tcctcctcctgcagcttgagggagatgccgcggac 342 ||||||||||||||||||| |||||| || ||||| Sbjct: 261 tcctcctcctgcagcttgatggagataccacggac 227
>ref|XM_525570.1| PREDICTED: Pan troglodytes similar to 40S ribosomal protein S17 (LOC470186), mRNA Length = 432 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 255 ctcctcctcctgcagcttgatggagat 229
>ref|XM_510548.1| PREDICTED: Pan troglodytes similar to 40S ribosomal protein S17 (LOC453592), mRNA Length = 520 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 309 ctcctcctcctgcagcttgatggagat 283
>gb|AY431522.1| Aedes aegypti ASAP ID: 34649 cytosolic small ribosomal subunit S17 mRNA sequence Length = 634 Score = 46.1 bits (23), Expect = 0.088 Identities = 32/35 (91%) Strand = Plus / Minus Query: 308 tcctcctcctgcagcttgagggagatgccgcggac 342 ||||||||||||||||||| |||||| || ||||| Sbjct: 281 tcctcctcctgcagcttgatggagataccacggac 247
>ref|XM_874149.1| PREDICTED: Bos taurus similar to 40S ribosomal protein S17, transcript variant 4 (LOC514174), mRNA Length = 951 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 734 ctcctcctcctgcagcttgatggagat 708
>ref|XM_874055.1| PREDICTED: Bos taurus similar to 40S ribosomal protein S17, transcript variant 3 (LOC514174), mRNA Length = 2032 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 1812 ctcctcctcctgcagcttgatggagat 1786
>gb|BC070222.1| Homo sapiens ribosomal protein S17, mRNA (cDNA clone MGC:88203 IMAGE:6738383), complete cds Length = 512 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 256 ctcctcctcctgcagcttgatggagat 230
>gb|BC049824.1| Homo sapiens ribosomal protein S17, mRNA (cDNA clone MGC:59704 IMAGE:6212543), complete cds Length = 475 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 235 ctcctcctcctgcagcttgatggagat 209
>ref|NM_001021.3| Homo sapiens ribosomal protein S17 (RPS17), mRNA Length = 511 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 260 ctcctcctcctgcagcttgatggagat 234
>gb|BC019899.1| Homo sapiens ribosomal protein S17, mRNA (cDNA clone MGC:29933 IMAGE:3882924), complete cds Length = 480 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 243 ctcctcctcctgcagcttgatggagat 217
>gb|BC000118.1| Homo sapiens cDNA clone IMAGE:3352435, **** WARNING: chimeric clone **** Length = 2838 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 2596 ctcctcctcctgcagcttgatggagat 2570
>gb|BC021027.1| Homo sapiens cDNA clone IMAGE:3621797, **** WARNING: chimeric clone **** Length = 1468 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 1221 ctcctcctcctgcagcttgatggagat 1195
>emb|Z74021.1|HSB1E7 Human DNA sequence from clone SC22CB-1E7 on chromosome 22 Contains a ribosomal protein S17 (RPS17) pseudogene and the 5' end of the SLC5A1 gene for solute carrier family 5 (sodiumglucose transporter) member 1, complete sequence Length = 42493 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 22487 ctcctcctcctgcagcttgatggagat 22461
>gb|AC135995.7| Homo sapiens chromosome 15, clone RP13-608F4, complete sequence Length = 157246 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 6328 ctcctcctcctgcagcttgatggagat 6302
>gb|AC126605.4| Homo sapiens chromosome 15, clone RP11-606M5, complete sequence Length = 169125 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 77898 ctcctcctcctgcagcttgatggagat 77872
>emb|CR620738.1| full-length cDNA clone CS0DK004YH09 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 452 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 229 ctcctcctcctgcagcttgatggagat 203
>emb|CR618357.1| full-length cDNA clone CS0DB001YL21 of Neuroblastoma Cot 10-normalized of Homo sapiens (human) Length = 759 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 536 ctcctcctcctgcagcttgatggagat 510
>emb|CR618328.1| full-length cDNA clone CS0DD004YF16 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 464 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 238 ctcctcctcctgcagcttgatggagat 212
>emb|CR615408.1| full-length cDNA clone CS0DD004YL21 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 460 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 235 ctcctcctcctgcagcttgatggagat 209
>emb|CR616208.1| full-length cDNA clone CS0DI079YE09 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1922 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 1224 ctcctcctcctgcagcttgatggagat 1198
>gb|AC145334.12| Pan troglodytes clone rp43-24d7, complete sequence Length = 139632 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Plus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 37108 ctcctcctcctgcagcttgatggagat 37134
>emb|CR612555.1| full-length cDNA clone CS0DA002YJ22 of Neuroblastoma of Homo sapiens (human) Length = 1877 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 238 ctcctcctcctgcagcttgatggagat 212
>emb|CR609691.1| full-length cDNA clone CS0DC001YD01 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 461 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 238 ctcctcctcctgcagcttgatggagat 212
>gb|AC110291.6| Homo sapiens chromosome 15, clone RP11-379H8, complete sequence Length = 186812 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Plus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 83947 ctcctcctcctgcagcttgatggagat 83973
>emb|CR602312.1| full-length cDNA clone CS0DL008YM17 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 460 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 235 ctcctcctcctgcagcttgatggagat 209
>emb|CR595559.1| full-length cDNA clone CS0DB009YI01 of Neuroblastoma Cot 10-normalized of Homo sapiens (human) Length = 463 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 238 ctcctcctcctgcagcttgatggagat 212
>gb|AC107421.6| Homo sapiens 3 BAC RP11-8J23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160396 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Plus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 146331 ctcctcctcctgcagcttgatggagat 146357
>gb|AC117379.3| Homo sapiens 3 BAC RP11-392C7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181191 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 167994 ctcctcctcctgcagcttgatggagat 167968
>ref|XM_939482.1| PREDICTED: Homo sapiens similar to 40S ribosomal protein S17 (LOC650398), mRNA Length = 529 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 266 ctcctcctcctgcagcttgatggagat 240
>ref|XM_377716.3| PREDICTED: Homo sapiens similar to 40S ribosomal protein S17 (LOC402057), mRNA Length = 528 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 266 ctcctcctcctgcagcttgatggagat 240
>ref|XM_940826.1| PREDICTED: Homo sapiens similar to 40S ribosomal protein S17 (LOC257039), mRNA Length = 624 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 447 ctcctcctcctgcagcttgatggagat 421
>ref|XM_172230.2| PREDICTED: Homo sapiens similar to 40S ribosomal protein S17 (LOC257039), mRNA Length = 624 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 447 ctcctcctcctgcagcttgatggagat 421
>gb|BC022370.1| Homo sapiens ribosomal protein S17, mRNA (cDNA clone MGC:23905 IMAGE:4738331), complete cds Length = 504 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 260 ctcctcctcctgcagcttgatggagat 234
>gb|AC010724.6|AC010724 Homo sapiens BAC clone RP11-152F13 from 15, complete sequence Length = 157200 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 19491 ctcctcctcctgcagcttgatggagat 19465
>gb|AY892179.1| Synthetic construct Homo sapiens clone FLH029468.01L ribosomal protein S17 (RPS17) mRNA, partial cds Length = 408 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 231 ctcctcctcctgcagcttgatggagat 205
>gb|AY889719.1| Synthetic construct Homo sapiens clone FLH029472.01X ribosomal protein S17 (RPS17) mRNA, complete cds Length = 408 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 231 ctcctcctcctgcagcttgatggagat 205
>dbj|AK026570.1| Homo sapiens cDNA: FLJ22917 fis, clone KAT06430 Length = 647 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 406 ctcctcctcctgcagcttgatggagat 380
>gb|BC071928.1| Homo sapiens ribosomal protein S17, mRNA (cDNA clone MGC:88613 IMAGE:5090053), complete cds Length = 488 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 246 ctcctcctcctgcagcttgatggagat 220
>gb|BC062715.1| Homo sapiens ribosomal protein S17, mRNA (cDNA clone MGC:72007 IMAGE:4068842), complete cds Length = 596 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 345 ctcctcctcctgcagcttgatggagat 319
>gb|BC009407.2| Homo sapiens ribosomal protein S17, mRNA (cDNA clone MGC:19553 IMAGE:4334552), complete cds Length = 489 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 238 ctcctcctcctgcagcttgatggagat 212
>gb|BC020453.1| Homo sapiens ribosomal protein S17, mRNA (cDNA clone IMAGE:3450232) Length = 479 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 242 ctcctcctcctgcagcttgatggagat 216
>gb|M18000.1|HUMRPS17A Human ribosomal protein S17 gene, complete cds Length = 4029 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 1716 ctcctcctcctgcagcttgatggagat 1690
>gb|M13932.1|HUMRPS17 Human ribosomal protein S17 mRNA, complete cds Length = 477 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagat 333 |||||||||||||||||||| |||||| Sbjct: 256 ctcctcctcctgcagcttgatggagat 230
>ref|XM_527902.1| PREDICTED: Pan troglodytes similar to 40S ribosomal protein S17 (LOC472527), mRNA Length = 366 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggaga 332 |||||||||||||||||||| ||||| Sbjct: 230 ctcctcctcctgcagcttgatggaga 205
>gb|AF539801.1| Plasmodiophora brassicae S17 ribosomal protein mRNA, partial cds Length = 298 Score = 44.1 bits (22), Expect = 0.35 Identities = 46/54 (85%) Strand = Plus / Minus Query: 298 gcgttcgcgctcctcctcctgcagcttgagggagatgccgcggacggggccgcg 351 |||||||||||| |||||||| ||||| || || ||||| ||||| || ||||| Sbjct: 156 gcgttcgcgctcttcctcctgaagcttcagcgaaatgccacggaccggcccgcg 103
>gb|AC121814.3| Mus musculus BAC clone RP23-457H19 from chromosome 15, complete sequence Length = 188928 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 55 taataaaaacttataaagcatgatag 80 ||||||||||||| |||||||||||| Sbjct: 89485 taataaaaacttaaaaagcatgatag 89460
>ref|XM_533364.2| PREDICTED: Canis familiaris similar to PQ loop repeat containing 1 (predicted) (LOC476157), mRNA Length = 1077 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgcc 336 |||||||||||||| ||||| ||||||||| Sbjct: 865 ctcctcctcctgcaacttgatggagatgcc 836
>gb|AC008155.10| Homo sapiens chromosome 7 clone RP11-289F17, complete sequence Length = 176181 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggaga 332 |||||||||||||||||||| ||||| Sbjct: 106452 ctcctcctcctgcagcttgatggaga 106427
>ref|NM_200845.1| Danio rerio zgc:77702 (zgc:77702), mRNA Length = 491 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgcc 336 ||||||||||||||| |||| ||||||||| Sbjct: 237 ctcctcctcctgcagtttgatggagatgcc 208
>ref|XM_695547.1| PREDICTED: Danio rerio similar to casein kinase 1, gamma 1 (LOC573918), mRNA Length = 1278 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgcc 336 ||||||||||||||| |||| ||||||||| Sbjct: 838 ctcctcctcctgcagtttgatggagatgcc 809
>ref|XM_499473.1| PREDICTED: Homo sapiens similar to ribosomal protein S17 (LOC442726), mRNA Length = 366 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggaga 332 |||||||||||||||||||| ||||| Sbjct: 230 ctcctcctcctgcagcttgatggaga 205
>ref|XM_939008.1| PREDICTED: Homo sapiens similar to ribosomal protein S17 (LOC442726), mRNA Length = 366 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggaga 332 |||||||||||||||||||| ||||| Sbjct: 230 ctcctcctcctgcagcttgatggaga 205
>ref|XM_374655.1| PREDICTED: Homo sapiens similar to ribosomal protein S17 (LOC442726), mRNA Length = 366 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggaga 332 |||||||||||||||||||| ||||| Sbjct: 230 ctcctcctcctgcagcttgatggaga 205
>emb|AL935050.11| Zebrafish DNA sequence from clone CH211-59B1, complete sequence Length = 177773 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgcc 336 ||||||||||||||| |||| ||||||||| Sbjct: 172075 ctcctcctcctgcagtttgatggagatgcc 172046
>gb|BC062279.1| Danio rerio zgc:77702, mRNA (cDNA clone MGC:77702 IMAGE:6997693), complete cds Length = 491 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgcc 336 ||||||||||||||| |||| ||||||||| Sbjct: 237 ctcctcctcctgcagtttgatggagatgcc 208
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 44.1 bits (22), Expect = 0.35 Identities = 52/62 (83%) Strand = Plus / Plus Query: 281 gggacgaagtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcgg 340 |||||||| ||||||||||| || ||||| || ||||||| ||||| || ||||| ||| Sbjct: 366739 gggacgaaatccatgcggcgctcacgctcttcttcctgcaatttgagagaaatgcctcgg 366798 Query: 341 ac 342 || Sbjct: 366799 ac 366800
>gb|U22230.1|FCU22230 Felis domesticus ribosomal protein S17 mRNA, partial cds Length = 447 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgcc 336 |||||| ||||||||||||| ||||||||| Sbjct: 228 ctcctcttcctgcagcttgatggagatgcc 199
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 201 cggccatgccgaggaacgccagcat 225 ||||||||||||||| ||||||||| Sbjct: 920327 cggccatgccgaggaccgccagcat 920351
>ref|XM_812742.1| Trypanosoma cruzi strain CL Brener ribosomal protein S25 (Tc00.1047053509233.190) partial mRNA Length = 333 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 tgtccatcgtctccttgtcga 245 ||||||||||||||||||||| Sbjct: 163 tgtccatcgtctccttgtcga 143
>ref|XM_814621.1| Trypanosoma cruzi strain CL Brener ribosomal protein S25 (Tc00.1047053504105.94) partial mRNA Length = 333 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 tgtccatcgtctccttgtcga 245 ||||||||||||||||||||| Sbjct: 163 tgtccatcgtctccttgtcga 143
>gb|AY231772.1| Drosophila yakuba clone yak-em_RpS17 mRNA sequence Length = 393 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagat 333 |||||||||||||||| ||||| |||||| Sbjct: 233 cgctcctcctcctgcaacttgatggagat 205
>emb|AL049693.16|HSDJ753D5 Human DNA sequence from clone RP4-753D5 on chromosome 6p12.1-12.3 Contains the 3' end of the TFAP2B gene for transcription factor AP-2 beta (activating enhancer-binding protein 2 beta), the gene for a novel protein similar to RPS17 (40S ribosomal protein S17), a pseudogene similar to part of nuclear transport receptor MTR10A, an FTH1 (ferritin heavy polypeptide 1) (FTHL6) pseudogene, complete sequence Length = 118280 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 309 cctcctcctgcagcttgagggagat 333 |||||||||||||||||| |||||| Sbjct: 25834 cctcctcctgcagcttgatggagat 25858
>emb|AJ271817.1|DME271817 Drosophila melanogaster aay gene (partial), Shc gene, RPS17 gene and MTF-1 gene Length = 17111 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 305 cgctcctcctcctgcagcttgagggagat 333 |||||||||||||||| ||||| |||||| Sbjct: 4853 cgctcctcctcctgcaacttgatggagat 4881
>gb|AC010028.8| Drosophila melanogaster 3L BAC RP98-1E20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187489 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 305 cgctcctcctcctgcagcttgagggagat 333 |||||||||||||||| ||||| |||||| Sbjct: 128161 cgctcctcctcctgcaacttgatggagat 128189
>ref|NM_079278.2| Drosophila melanogaster Ribosomal protein S17 CG3922-RB (RpS17), mRNA Length = 637 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagat 333 |||||||||||||||| ||||| |||||| Sbjct: 289 cgctcctcctcctgcaacttgatggagat 261
>ref|NG_005089.1| Homo sapiens ribosomal protein S17 pseudogene (LOC442216) on chromosome 6 Length = 702 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 309 cctcctcctgcagcttgagggagat 333 |||||||||||||||||| |||||| Sbjct: 349 cctcctcctgcagcttgatggagat 373
>gb|AE005112.1| Halobacterium sp. NRC-1 section 143 of 170 of the complete genome Length = 12204 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 gtcgacgcggatctcgtcgac 261 ||||||||||||||||||||| Sbjct: 10965 gtcgacgcggatctcgtcgac 10985
>gb|AE003552.4| Drosophila melanogaster chromosome 3L, section 33 of 83 of the complete sequence Length = 286770 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 305 cgctcctcctcctgcagcttgagggagat 333 |||||||||||||||| ||||| |||||| Sbjct: 238758 cgctcctcctcctgcaacttgatggagat 238786
>gb|BT001651.1| Drosophila melanogaster RE44119 full insert cDNA Length = 543 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagat 333 |||||||||||||||| ||||| |||||| Sbjct: 286 cgctcctcctcctgcaacttgatggagat 258
>gb|M22142.1|DRORPS17 D.melanogaster ribosomal protein S17 gene, complete cds Length = 1700 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 305 cgctcctcctcctgcagcttgagggagat 333 |||||||||||||||| ||||| |||||| Sbjct: 1295 cgctcctcctcctgcaacttgatggagat 1267
>gb|AY850937.1| Pectinaria gouldii ribosomal protein S17 mRNA, complete cds Length = 578 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttga 326 |||||||||||||||||||| Sbjct: 258 ctcctcctcctgcagcttga 239
>ref|NM_111897.2| Arabidopsis thaliana structural constituent of ribosome AT3G10610 mRNA, complete cds Length = 771 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 287 aagtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggac 342 |||||||| || | ||| ||||| ||||| || |||||||||||||| || ||||| Sbjct: 331 aagtccattcgcctttcacgctcttcctcttgtagcttgagggagattccacggac 276
>ref|XM_526885.1| PREDICTED: Pan troglodytes similar to zinc finger, BED domain containing 3; hypothetical protein MGC15435; 2610005H11Rik (LOC471507), mRNA Length = 474 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 cgcgctcctcctcctgcagc 322 |||||||||||||||||||| Sbjct: 298 cgcgctcctcctcctgcagc 279
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 211 gaggaacgccagcatgtccatcgtctcc 238 |||||| |||||| |||||||||||||| Sbjct: 743103 gaggaaggccagcgtgtccatcgtctcc 743076 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 gggccgcgctggatgcggcg 363 |||||||||||||||||||| Sbjct: 665602 gggccgcgctggatgcggcg 665583
>gb|AF159690.1| Myxococcus xanthus serine/threonine kinase PKN7 (pkn7) and serine/threonine kinase PKN11 (pkn11) genes, complete cds; and unknown gene Length = 6145 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 ggccgcgctggatgcggcgc 364 |||||||||||||||||||| Sbjct: 4324 ggccgcgctggatgcggcgc 4343
>ref|XM_867513.1| PREDICTED: Bos taurus similar to zinc finger, BED domain containing 3 (LOC615651), mRNA Length = 645 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 cgcgctcctcctcctgcagc 322 |||||||||||||||||||| Sbjct: 460 cgcgctcctcctcctgcagc 441
>gb|AY395570.1| Chlamys farreri ribosomal protein S17 mRNA, partial cds Length = 474 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 307 ctcctcctcctgcagcttgagggagatgccgcggac 342 |||||||||||| || |||| ||||||||| ||||| Sbjct: 204 ctcctcctcctggagtttgatggagatgcctcggac 169
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 gccgcgctggatgcggcgca 365 |||||||||||||||||||| Sbjct: 4999722 gccgcgctggatgcggcgca 4999703
>gb|AC013428.6|ATAC013428 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence Length = 93985 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 287 aagtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggac 342 |||||||| || | ||| ||||| ||||| || |||||||||||||| || ||||| Sbjct: 76869 aagtccattcgcctttcacgctcttcctcttgtagcttgagggagattccacggac 76814
>gb|DQ352890.1| Aenictus sp. 2 CSM-2006 abdominal-A (AbdA) gene, partial cds Length = 642 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 gggccgcgctggatgcggcg 363 |||||||||||||||||||| Sbjct: 382 gggccgcgctggatgcggcg 363
>gb|AY091313.1| Arabidopsis thaliana putative 40S ribosomal protein S17 (At3g10610) mRNA, complete cds Length = 454 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 287 aagtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggac 342 |||||||| || | ||| ||||| ||||| || |||||||||||||| || ||||| Sbjct: 251 aagtccattcgcctttcacgctcttcctcttgtagcttgagggagattccacggac 196
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 gcggacgcggtgacctcgggagcg 181 |||||||||||||||| ||||||| Sbjct: 2766580 gcggacgcggtgacctggggagcg 2766603
>gb|AY063881.1| Arabidopsis thaliana putative 40S ribosomal protein S17 (At3g10610) mRNA, complete cds Length = 655 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 287 aagtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggac 342 |||||||| || | ||| ||||| ||||| || |||||||||||||| || ||||| Sbjct: 331 aagtccattcgcctttcacgctcttcctcttgtagcttgagggagattccacggac 276
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 gccgcgctggatgcggcgca 365 |||||||||||||||||||| Sbjct: 1090591 gccgcgctggatgcggcgca 1090610
>emb|AL731621.3|OSJN00268 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013O03, complete sequence Length = 118791 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 cgctcctcctcctgcagctt 324 |||||||||||||||||||| Sbjct: 88382 cgctcctcctcctgcagctt 88401
>gb|AC016924.19| Homo sapiens 3 BAC RP11-205A6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 51001 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ggctggcggaagggggcggc 159 |||||||||||||||||||| Sbjct: 16547 ggctggcggaagggggcggc 16528
>gb|AY072718.1| Oryctolagus cuniculus phospholipid transfer protein (PLTP) mRNA, complete cds Length = 1782 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gcgctcctcctcctgcagct 323 |||||||||||||||||||| Sbjct: 830 gcgctcctcctcctgcagct 811
>gb|AF382033.1|AF382033 Oryctolagus cuniculus phospholipid transfer protein (PLTP) mRNA, complete cds Length = 1743 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gcgctcctcctcctgcagct 323 |||||||||||||||||||| Sbjct: 786 gcgctcctcctcctgcagct 767
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 cgctcctcctcctgcagctt 324 |||||||||||||||||||| Sbjct: 13452026 cgctcctcctcctgcagctt 13452045
>gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence Length = 118107 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 287 aagtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggac 342 |||||||| || | ||| ||||| ||||| || |||||||||||||| || ||||| Sbjct: 27648 aagtccattcgcctttcacgctcttcctcttgtagcttgagggagattccacggac 27703
>gb|AY088250.1| Arabidopsis thaliana clone 4775 mRNA, complete sequence Length = 740 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 287 aagtccatgcggcgttcgcgctcctcctcctgcagcttgagggagatgccgcggac 342 |||||||| || | ||| ||||| ||||| || |||||||||||||| || ||||| Sbjct: 345 aagtccattcgcctttcacgctcttcctcttgtagcttgagggagattccacggac 290
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 cggggccgcgctggatgcgg 361 |||||||||||||||||||| Sbjct: 5664080 cggggccgcgctggatgcgg 5664099
>dbj|AK110039.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-160-B07, full insert sequence Length = 3388 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gcgttcgcgctcctcctcct 317 |||||||||||||||||||| Sbjct: 1835 gcgttcgcgctcctcctcct 1816 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,164,709 Number of Sequences: 3902068 Number of extensions: 3164709 Number of successful extensions: 75980 Number of sequences better than 10.0: 173 Number of HSP's better than 10.0 without gapping: 173 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75288 Number of HSP's gapped (non-prelim): 686 length of query: 405 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 383 effective length of database: 17,147,199,772 effective search space: 6567377512676 effective search space used: 6567377512676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
