ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast59a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RVVX_DABRU (Q7LZ61) Coagulation factor X-activating enzyme heavy... 28 4.4
2HR38_DROME (P49869) Probable nuclear hormone receptor HR38 (dHR38) 28 5.8
3ALR1_VIBCH (Q9KUY6) Alanine racemase 1 (EC 5.1.1.1) 27 9.9
4DXS_LISIN (Q92BZ0) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2... 27 9.9

>RVVX_DABRU (Q7LZ61) Coagulation factor X-activating enzyme heavy chain (EC|
           3.4.24.58) (RVV-X heavy chain) (Coagulation factor
           X-activating enzyme alpha-chain) (Russellysin)
          Length = 429

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 245 QIKPGAMCGNGVCVCCLAIESA 180
           ++KPGA CGNG+C     I++A
Sbjct: 246 KLKPGAECGNGLCCYQCKIKTA 267



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>HR38_DROME (P49869) Probable nuclear hormone receptor HR38 (dHR38)|
          Length = 1073

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 86  TKKTQSSYIKVQTLKSWS-LPIFSNTLFFLAATPTQSQGNTRKHHCHTSHPVLFGHSNII 262
           T +  +S + +Q   S+S L  F N     A+T T +  +   HH H +H +   H N  
Sbjct: 236 TNQATTSMLLLQPNSSFSSLSPFDNFSTQTASTTTTTSASAAGHHQHHNHLLHQQHHNQQ 295

Query: 263 R*QQQE 280
           + QQQ+
Sbjct: 296 QQQQQQ 301



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>ALR1_VIBCH (Q9KUY6) Alanine racemase 1 (EC 5.1.1.1)|
          Length = 361

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 40  KIDNAGHRVAQYRSQYQENTVELHQSSNL 126
           K+D+  HR+     QYQ+    LHQ  N+
Sbjct: 122 KVDSGMHRLGVRPEQYQDFVARLHQCENV 150



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>DXS_LISIN (Q92BZ0) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)|
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS)
          Length = 632

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 68  HSTGPSTKKTQSSYIKVQTLKSWSLPIFSNTLFFLAA 178
           H TGP   +T S     +T+ SWS  + SN L  LAA
Sbjct: 301 HGTGPYKVETGSFIKPAKTVASWS-SVISNELMRLAA 336


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,059,256
Number of Sequences: 219361
Number of extensions: 582447
Number of successful extensions: 1713
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1713
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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