>gb|BT018854.1| Zea mays clone EL01N0556B07.d mRNA sequence
          Length = 1562

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                        
Query: 270  agtcggagcgccgggccggggtccagtgcggcagggcggggctgaagtggctggacacca 329
            ||||||||||| || | ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 1268 agtcggagcgctggccgggggtccagtgcggcagcgcggggctgaagtggctggacacga 1209

                      
Query: 330  cgcgcgagtc 339
            |||| |||||
Sbjct: 1208 cgcgggagtc 1199

>gb|AY103757.1| Zea mays PCO122927 mRNA sequence
          Length = 1603

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                        
Query: 270  agtcggagcgccgggccggggtccagtgcggcagggcggggctgaagtggctggacacca 329
            ||||||||||| || | ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 1332 agtcggagcgctggccgggggtccagtgcggcagcgcggggctgaagtggctggacacga 1273

                      
Query: 330  cgcgcgagtc 339
            |||| |||||
Sbjct: 1272 cgcgggagtc 1263

>ref|XM_478978.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2264

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 284  gccggggtccagtgcggcagggcggggctgaagtggctggacaccacgcgcgagtc 339
            ||||| |||||||| || || || |||||||||||||||||||| |||||||||||
Sbjct: 1961 gccggagtccagtgtgggagcgccgggctgaagtggctggacacgacgcgcgagtc 1906

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                        
Query: 284      gccggggtccagtgcggcagggcggggctgaagtggctggacaccacgcgcgagtc 339
                ||||| |||||||| || || || |||||||||||||||||||| |||||||||||
Sbjct: 24096441 gccggagtccagtgtgggagcgccgggctgaagtggctggacacgacgcgcgagtc 24096496



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                      
Query: 286      cggggtccagtgcggcagggcggggctgaagtggctggacaccacgcgcgagtc 339
                |||| |||| ||||||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 23271698 cgggatccaatgcggcagggcagggctgaattggctagacacgacgcgcgagtc 23271751



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                               
Query: 288      gggtccagtgcggcagggcggggctgaagtg 318
                |||||||||| ||||||||||||||||||||
Sbjct: 23265564 gggtccagtgtggcagggcggggctgaagtg 23265534

>dbj|AP003846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1710_H11
          Length = 136107

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                     
Query: 284   gccggggtccagtgcggcagggcggggctgaagtggctggacaccacgcgcgagtc 339
             ||||| |||||||| || || || |||||||||||||||||||| |||||||||||
Sbjct: 29856 gccggagtccagtgtgggagcgccgggctgaagtggctggacacgacgcgcgagtc 29911

>dbj|AK101193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030I03, full
            insert sequence
          Length = 2264

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 284  gccggggtccagtgcggcagggcggggctgaagtggctggacaccacgcgcgagtc 339
            ||||| |||||||| || || || |||||||||||||||||||| |||||||||||
Sbjct: 1961 gccggagtccagtgtgggagcgccgggctgaagtggctggacacgacgcgcgagtc 1906

>ref|XM_478833.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2030

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 286  cggggtccagtgcggcagggcggggctgaagtggctggacaccacgcgcgagtc 339
            |||| |||| ||||||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 1952 cgggatccaatgcggcagggcagggctgaattggctagacacgacgcgcgagtc 1899

>dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1065_B06
          Length = 113170

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                   
Query: 286   cggggtccagtgcggcagggcggggctgaagtggctggacaccacgcgcgagtc 339
             |||| |||| ||||||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 26956 cgggatccaatgcggcagggcagggctgaattggctagacacgacgcgcgagtc 27009



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                            
Query: 288   gggtccagtgcggcagggcggggctgaagtg 318
             |||||||||| ||||||||||||||||||||
Sbjct: 20822 gggtccagtgtggcagggcggggctgaagtg 20792

>dbj|AK106839.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-H03, full
            insert sequence
          Length = 2031

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 286  cggggtccagtgcggcagggcggggctgaagtggctggacaccacgcgcgagtc 339
            |||| |||| ||||||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 1953 cgggatccaatgcggcagggcagggctgaattggctagacacgacgcgcgagtc 1900

>ref|XM_478829.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1437

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 288  gggtccagtgcggcagggcggggctgaagtg 318
            |||||||||| ||||||||||||||||||||
Sbjct: 1426 gggtccagtgtggcagggcggggctgaagtg 1396

>gb|AC104872.8| Mus musculus chromosome 12, clone RP23-360C2, complete sequence
          Length = 196850

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 4     tcatcaaccattaatcatcata 25
             ||||||||||||||||||||||
Sbjct: 84669 tcatcaaccattaatcatcata 84690

>gb|AC179924.2| Mus musculus BAC clone RP23-270O20 from chromosome 12, complete
             sequence
          Length = 217229

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 4     tcatcaaccattaatcatcata 25
             ||||||||||||||||||||||
Sbjct: 73155 tcatcaaccattaatcatcata 73134

>emb|CT030697.6| Mouse DNA sequence from clone RP23-274A4 on chromosome 12, complete
              sequence
          Length = 198527

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 4      tcatcaaccattaatcatcata 25
              ||||||||||||||||||||||
Sbjct: 164537 tcatcaaccattaatcatcata 164516

>gb|AC113067.8| Mus musculus chromosome 16, clone RP23-264I14, complete sequence
          Length = 246802

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 99     tcaaaggtggtactggcactcactc 123
              |||||||||||||||||||| ||||
Sbjct: 142616 tcaaaggtggtactggcacttactc 142640

>gb|AC119971.8| Mus musculus chromosome 16, clone RP24-480D8, complete sequence
          Length = 166093

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    attcctagcatcagatcaaa 103
             ||||||||||||||||||||
Sbjct: 25764 attcctagcatcagatcaaa 25783

>gb|AE008979.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 5 of
            256 of the complete sequence
          Length = 13091

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 245  ggcgatcgccgtcgagcaga 264
            ||||||||||||||||||||
Sbjct: 9787 ggcgatcgccgtcgagcaga 9806

>gb|AC108948.3| Mus musculus BAC clone RP23-183P12 from 15, complete sequence
          Length = 196923

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    acatcaagcattaatcattaacca 71
             |||||||||||| |||||||||||
Sbjct: 95495 acatcaagcatttatcattaacca 95518

>gb|U41992.1| Caenorhabditis elegans cosmid F32E10, complete sequence
          Length = 33318

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   tctcgttctactactactag 141
             ||||||||||||||||||||
Sbjct: 27071 tctcgttctactactactag 27090

>emb|AL034429.1|HS894K16 Human DNA sequence from clone RP5-894K16 on chromosome 20q113.11-13.13
              Contains the COX6CP2 gene for cytochrome c oxidase subunit
              VIc pseudogene 2, the 5' end of the PTPN1 gene for protein
              tyrosine phosphatase, non-receptor type 1 (EC 3.1.3.48) and
              a CpG island, complete sequence
          Length = 131607

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     attccagcctcattcctagc 92
              ||||||||||||||||||||
Sbjct: 128460 attccagcctcattcctagc 128479

>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence
          Length = 167258

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     taatcattaaccatattcca 78
              ||||||||||||||||||||
Sbjct: 138155 taatcattaaccatattcca 138174

>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   ggcgatcgccgtcgagcaga 264
             ||||||||||||||||||||
Sbjct: 52932 ggcgatcgccgtcgagcaga 52951

>gb|AC091643.6| Homo sapiens chromosome 18, clone RP11-727B4, complete sequence
          Length = 169944

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    taatcattaaccatattcca 78
             ||||||||||||||||||||
Sbjct: 40030 taatcattaaccatattcca 40049

>gb|AC125455.3| Mus musculus BAC clone RP24-170L2 from chromosome 15, complete sequence
          Length = 145059

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 48     acatcaagcattaatcattaacca 71
              |||||||||||| |||||||||||
Sbjct: 122477 acatcaagcatttatcattaacca 122454

>gb|AC154344.1| Mus musculus BAC clone RP23-226G16 from 16, complete sequence
          Length = 171340

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     attcctagcatcagatcaaa 103
              ||||||||||||||||||||
Sbjct: 151409 attcctagcatcagatcaaa 151428


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,060,410
Number of Sequences: 3902068
Number of extensions: 2060410
Number of successful extensions: 38436
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38380
Number of HSP's gapped (non-prelim): 56
length of query: 339
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 317
effective length of database: 17,147,199,772
effective search space: 5435662327724
effective search space used: 5435662327724
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)