ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast58h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY103755.1| Zea mays PCO153089 mRNA sequence 141 2e-30
2ref|XM_470036.1| Oryza sativa (japonica cultivar-group), mRNA 101 1e-18
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 101 1e-18
4gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genom... 101 1e-18
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 101 1e-18
6dbj|AK121037.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 1e-18
7dbj|AK059286.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 1e-18
8ref|XM_477080.1| Oryza sativa (japonica cultivar-group), mRNA 56 7e-05
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 56 7e-05
10dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic D... 56 7e-05
11dbj|AK107761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 7e-05
12gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 1.1
13gb|AE008737.2| Salmonella typhimurium LT2, section 45 of 220 of ... 42 1.1
14emb|AL627098.30| Mouse DNA sequence from clone RP23-108K17 on ch... 42 1.1
15gb|AC084768.4| Homo sapiens chromosome 8, clone RP11-281H11, com... 40 4.2
16gb|AC099024.1| Drosophila melanogaster, chromosome 2R, region 52... 40 4.2
17gb|AC099005.1| Drosophila melanogaster, chromosome 2R, region 52... 40 4.2
18gb|AC009466.17|AC009466 Homo sapiens chromosome 11, clone RP11-8... 40 4.2
19gb|AC004944.1|AC004944 Homo sapiens PAC clone RP5-991O23 from 8,... 40 4.2
20gb|AE003809.3| Drosophila melanogaster chromosome 2R, section 41... 40 4.2
21gb|AC005474.1|AC005474 Drosophila melanogaster, chromosome 2R, r... 40 4.2
22dbj|AP000880.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 4.2 
>gb|AY103755.1| Zea mays PCO153089 mRNA sequence
          Length = 916

 Score =  141 bits (71), Expect = 2e-30
 Identities = 76/78 (97%)
 Strand = Plus / Minus

                                                                       
Query: 245 cttgacctggtccagcacggggccgcagagcgatacgccgtcggtgaccttggtgtggta 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 720 cttgacctggtccagcacggggccgcagagcgagacgccgtcggtgaccttggtgtggta 661

                             
Query: 305 gtaggagctgtanaaggt 322
           |||||||||||| |||||
Sbjct: 660 gtaggagctgtagaaggt 643
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>ref|XM_470036.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1474

 Score =  101 bits (51), Expect = 1e-18
 Identities = 71/78 (91%)
 Strand = Plus / Minus

                                                                        
Query: 245  cttgacctggtccagcacggggccgcagagcgatacgccgtcggtgaccttggtgtggta 304
            ||||||||| ||||||||||||||||| ||||| ||||||||| | ||||||||||||||
Sbjct: 1246 cttgacctgatccagcacggggccgcacagcgagacgccgtcgctcaccttggtgtggta 1187

                              
Query: 305  gtaggagctgtanaaggt 322
            ||| |||||||| |||||
Sbjct: 1186 gtacgagctgtagaaggt 1169
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  101 bits (51), Expect = 1e-18
 Identities = 71/78 (91%)
 Strand = Plus / Minus

                                                                            
Query: 245      cttgacctggtccagcacggggccgcagagcgatacgccgtcggtgaccttggtgtggta 304
                ||||||||| ||||||||||||||||| ||||| ||||||||| | ||||||||||||||
Sbjct: 33463625 cttgacctgatccagcacggggccgcacagcgagacgccgtcgctcaccttggtgtggta 33463566

                                  
Query: 305      gtaggagctgtanaaggt 322
                ||| |||||||| |||||
Sbjct: 33463565 gtacgagctgtagaaggt 33463548
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>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
             sequence
          Length = 154555

 Score =  101 bits (51), Expect = 1e-18
 Identities = 71/78 (91%)
 Strand = Plus / Plus

                                                                         
Query: 245   cttgacctggtccagcacggggccgcagagcgatacgccgtcggtgaccttggtgtggta 304
             ||||||||| ||||||||||||||||| ||||| ||||||||| | ||||||||||||||
Sbjct: 34486 cttgacctgatccagcacggggccgcacagcgagacgccgtcgctcaccttggtgtggta 34545

                               
Query: 305   gtaggagctgtanaaggt 322
             ||| |||||||| |||||
Sbjct: 34546 gtacgagctgtagaaggt 34563
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  101 bits (51), Expect = 1e-18
 Identities = 71/78 (91%)
 Strand = Plus / Minus

                                                                            
Query: 245      cttgacctggtccagcacggggccgcagagcgatacgccgtcggtgaccttggtgtggta 304
                ||||||||| ||||||||||||||||| ||||| ||||||||| | ||||||||||||||
Sbjct: 33554135 cttgacctgatccagcacggggccgcacagcgagacgccgtcgctcaccttggtgtggta 33554076

                                  
Query: 305      gtaggagctgtanaaggt 322
                ||| |||||||| |||||
Sbjct: 33554075 gtacgagctgtagaaggt 33554058
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>dbj|AK121037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050P15, full
            insert sequence
          Length = 1182

 Score =  101 bits (51), Expect = 1e-18
 Identities = 71/78 (91%)
 Strand = Plus / Minus

                                                                        
Query: 245  cttgacctggtccagcacggggccgcagagcgatacgccgtcggtgaccttggtgtggta 304
            ||||||||| ||||||||||||||||| ||||| ||||||||| | ||||||||||||||
Sbjct: 1031 cttgacctgatccagcacggggccgcacagcgagacgccgtcgctcaccttggtgtggta 972

                              
Query: 305  gtaggagctgtanaaggt 322
            ||| |||||||| |||||
Sbjct: 971  gtacgagctgtagaaggt 954
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>dbj|AK059286.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D10, full
            insert sequence
          Length = 1396

 Score =  101 bits (51), Expect = 1e-18
 Identities = 71/78 (91%)
 Strand = Plus / Minus

                                                                        
Query: 245  cttgacctggtccagcacggggccgcagagcgatacgccgtcggtgaccttggtgtggta 304
            ||||||||| ||||||||||||||||| ||||| ||||||||| | ||||||||||||||
Sbjct: 1245 cttgacctgatccagcacggggccgcacagcgagacgccgtcgctcaccttggtgtggta 1186

                              
Query: 305  gtaggagctgtanaaggt 322
            ||| |||||||| |||||
Sbjct: 1185 gtacgagctgtagaaggt 1168
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>ref|XM_477080.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 560

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 249 acctggtccagcacggggccgcagagcgatacgccgtcggtgaccttggtgtggtagtag 308
           |||||||||||||| || |||||  |||| |||||||||  | |  ||||||||||||||
Sbjct: 267 acctggtccagcaccggcccgcacggcgacacgccgtcgccggcgctggtgtggtagtag 208

                   
Query: 309 gagctgta 316
           ||||||||
Sbjct: 207 gagctgta 200
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                           
Query: 249     acctggtccagcacggggccgcagagcgatacgccgtcggtgaccttggtgtggtagtag 308
               |||||||||||||| || |||||  |||| |||||||||  | |  ||||||||||||||
Sbjct: 5803306 acctggtccagcaccggcccgcacggcgacacgccgtcgccggcgctggtgtggtagtag 5803247

                       
Query: 309     gagctgta 316
               ||||||||
Sbjct: 5803246 gagctgta 5803239
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>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1119_B04
          Length = 151721

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                          
Query: 249    acctggtccagcacggggccgcagagcgatacgccgtcggtgaccttggtgtggtagtag 308
              |||||||||||||| || |||||  |||| |||||||||  | |  ||||||||||||||
Sbjct: 110334 acctggtccagcaccggcccgcacggcgacacgccgtcgccggcgctggtgtggtagtag 110275

                      
Query: 309    gagctgta 316
              ||||||||
Sbjct: 110274 gagctgta 110267
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>dbj|AK107761.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-A09, full
           insert sequence
          Length = 560

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 249 acctggtccagcacggggccgcagagcgatacgccgtcggtgaccttggtgtggtagtag 308
           |||||||||||||| || |||||  |||| |||||||||  | |  ||||||||||||||
Sbjct: 267 acctggtccagcaccggcccgcacggcgacacgccgtcgccggcgctggtgtggtagtag 208

                   
Query: 309 gagctgta 316
           ||||||||
Sbjct: 207 gagctgta 200
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 275     cgatacgccgtcggtgaccttggtg 299
               |||| ||||||||||||||||||||
Sbjct: 3494547 cgatgcgccgtcggtgaccttggtg 3494571
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>gb|AE008737.2| Salmonella typhimurium LT2, section 45 of 220 of the complete genome
          Length = 65219

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 234   agcggcacgatcttgacctgg 254
             |||||||||||||||||||||
Sbjct: 41418 agcggcacgatcttgacctgg 41438
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>emb|AL627098.30| Mouse DNA sequence from clone RP23-108K17 on chromosome 4, complete
              sequence
          Length = 208131

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     ttgactaaggtgactaaggtg 39
              |||||||||||||||||||||
Sbjct: 150895 ttgactaaggtgactaaggtg 150915
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>gb|AC084768.4| Homo sapiens chromosome 8, clone RP11-281H11, complete sequence
          Length = 173677

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    atcgattaggagtccatcaa 109
             ||||||||||||||||||||
Sbjct: 25137 atcgattaggagtccatcaa 25156
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>gb|AC099024.1| Drosophila melanogaster, chromosome 2R, region 52X-53A, BAC clone
             BACR04J01, complete sequence
          Length = 182560

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     gcaaatcccacacaaattga 22
             ||||||||||||||||||||
Sbjct: 38309 gcaaatcccacacaaattga 38328
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>gb|AC099005.1| Drosophila melanogaster, chromosome 2R, region 52B-52C, BAC clone
              BACR11I22, complete sequence
          Length = 173165

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      gcaaatcccacacaaattga 22
              ||||||||||||||||||||
Sbjct: 111985 gcaaatcccacacaaattga 112004
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>gb|AC009466.17|AC009466 Homo sapiens chromosome 11, clone RP11-87N22, complete sequence
          Length = 193279

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aaatcccacacaaattgact 24
             ||||||||||||||||||||
Sbjct: 95515 aaatcccacacaaattgact 95496
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>gb|AC004944.1|AC004944 Homo sapiens PAC clone RP5-991O23 from 8, complete sequence
          Length = 133258

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     atcgattaggagtccatcaa 109
              ||||||||||||||||||||
Sbjct: 113989 atcgattaggagtccatcaa 114008
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>gb|AE003809.3| Drosophila melanogaster chromosome 2R, section 41 of 73 of the complete
             sequence
          Length = 262533

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     gcaaatcccacacaaattga 22
             ||||||||||||||||||||
Sbjct: 49877 gcaaatcccacacaaattga 49896
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>gb|AC005474.1|AC005474 Drosophila melanogaster, chromosome 2R, region 52C1-52C2, P1 clone
             DS08438, complete sequence
          Length = 74901

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     gcaaatcccacacaaattga 22
             ||||||||||||||||||||
Sbjct: 52241 gcaaatcccacacaaattga 52260
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>dbj|AP000880.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-839D17, complete
             sequence
          Length = 171853

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aaatcccacacaaattgact 24
             ||||||||||||||||||||
Sbjct: 78912 aaatcccacacaaattgact 78893


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,759,566
Number of Sequences: 3902068
Number of extensions: 1759566
Number of successful extensions: 29149
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29070
Number of HSP's gapped (non-prelim): 75
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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