ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast58h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506462.2| PREDICTED Oryza sativa (japonica cultivar-group... 64 3e-07
2ref|XM_479148.1| Oryza sativa (japonica cultivar-group), mRNA 64 3e-07
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
4dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
5dbj|AK109489.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
6dbj|AK102448.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
7dbj|AK069163.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
8ref|XM_510195.1| PREDICTED: Pan troglodytes similar to KIAA1236 ... 42 1.00
9ref|XM_651116.1| Entamoeba histolytica HM-1:IMSS hexosaminidase ... 42 1.00
10emb|AL359399.3|CNS05TEV Human chromosome 14 DNA sequence BAC C-2... 42 1.00
11gb|AC138196.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.9
12gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosom... 40 3.9
13gb|BC074304.1| Xenopus laevis MGC84108 protein, mRNA (cDNA clone... 40 3.9
14gb|AC125254.9| Mus musculus chromosome 9, clone RP24-156I15, com... 40 3.9
15gb|BC053916.1| Mus musculus leucyl-tRNA synthetase, mitochondria... 40 3.9
16emb|BX247869.21| Zebrafish DNA sequence from clone CH211-67D2 in... 40 3.9
17ref|XM_687147.1| PREDICTED: Danio rerio similar to Protein FAM57... 40 3.9
18dbj|AK053667.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 3.9
19dbj|AK045640.1| Mus musculus adult male corpora quadrigemina cDN... 40 3.9
20dbj|AK037012.1| Mus musculus adult female vagina cDNA, RIKEN ful... 40 3.9
21dbj|AK032695.1| Mus musculus 12 days embryo male wolffian duct i... 40 3.9
22dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
23ref|XM_343511.2| PREDICTED: Rattus norvegicus leucyl-tRNA synthe... 40 3.9
24gb|BC080303.1| Mus musculus leucyl-tRNA synthetase, mitochondria... 40 3.9
25gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.9
26ref|NM_153168.1| Mus musculus leucyl-tRNA synthetase, mitochondr... 40 3.9
27emb|AL773585.7| Mouse DNA sequence from clone RP23-16D18 on chro... 40 3.9
28emb|AJ428066.1|MMU428066 Mus musculus mRNA for leucyl-tRNA synth... 40 3.9
29emb|AL669911.16| Mouse DNA sequence from clone RP23-65G8 on chro... 40 3.9 
>ref|XM_506462.2| PREDICTED Oryza sativa (japonica cultivar-group), P0616D06.113 mRNA
          Length = 1610

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                        
Query: 218  gaagttggtcgcgaggcttccgaagaagaggtctccgttgaactccgtcacggaggtgat 277
            |||||||||||| ||||| |||| |||||| |||||||||||||| ||||| || |||| 
Sbjct: 1110 gaagttggtcgcaaggctgccgaggaagagatctccgttgaactctgtcaccgaagtgac 1169

                                
Query: 278  gaagttgataaccttccctt 297
             | |||||| || |||||||
Sbjct: 1170 catgttgatcacattccctt 1189
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>ref|XM_479148.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1468

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                        
Query: 218  gaagttggtcgcgaggcttccgaagaagaggtctccgttgaactccgtcacggaggtgat 277
            |||||||||||| ||||| |||| |||||| |||||||||||||| ||||| || |||| 
Sbjct: 1094 gaagttggtcgcaaggctgccgaggaagagatctccgttgaactctgtcaccgaagtgac 1035

                                
Query: 278  gaagttgataaccttccctt 297
             | |||||| || |||||||
Sbjct: 1034 catgttgatcacattccctt 1015
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                            
Query: 218      gaagttggtcgcgaggcttccgaagaagaggtctccgttgaactccgtcacggaggtgat 277
                |||||||||||| ||||| |||| |||||| |||||||||||||| ||||| || |||| 
Sbjct: 25236177 gaagttggtcgcaaggctgccgaggaagagatctccgttgaactctgtcaccgaagtgac 25236118

                                    
Query: 278      gaagttgataaccttccctt 297
                 | |||||| || |||||||
Sbjct: 25236117 catgttgatcacattccctt 25236098
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>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0616D06
          Length = 153800

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                         
Query: 218   gaagttggtcgcgaggcttccgaagaagaggtctccgttgaactccgtcacggaggtgat 277
             |||||||||||| ||||| |||| |||||| |||||||||||||| ||||| || |||| 
Sbjct: 52848 gaagttggtcgcaaggctgccgaggaagagatctccgttgaactctgtcaccgaagtgac 52789

                                 
Query: 278   gaagttgataaccttccctt 297
              | |||||| || |||||||
Sbjct: 52788 catgttgatcacattccctt 52769
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>dbj|AK109489.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-A10, full
            insert sequence
          Length = 1468

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                        
Query: 218  gaagttggtcgcgaggcttccgaagaagaggtctccgttgaactccgtcacggaggtgat 277
            |||||||||||| ||||| |||| |||||| |||||||||||||| ||||| || |||| 
Sbjct: 1094 gaagttggtcgcaaggctgccgaggaagagatctccgttgaactctgtcaccgaagtgac 1035

                                
Query: 278  gaagttgataaccttccctt 297
             | |||||| || |||||||
Sbjct: 1034 catgttgatcacattccctt 1015
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>dbj|AK102448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093O06, full
            insert sequence
          Length = 1609

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                         
Query: 218  gaagttggtcgcgaggcttccgaagaagaggtctccgttgaactc 262
            |||||||||||| ||||| |||| |||||| ||||||||||||||
Sbjct: 1110 gaagttggtcgcaaggctgccgaggaagagatctccgttgaactc 1154
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>dbj|AK069163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006C12, full
            insert sequence
          Length = 1431

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 218  gaagttggtcgcgaggcttccgaagaagaggtctccgttgaactccgtcac 268
            |||||||||||| ||| | |||| |||||| |||||||||||||| |||||
Sbjct: 1156 gaagttggtcgcaaggttgccgatgaagagatctccgttgaactctgtcac 1106
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>ref|XM_510195.1| PREDICTED: Pan troglodytes similar to KIAA1236 protein (LOC453197),
            mRNA
          Length = 9369

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 171  gcctggccctgtgcctgtgcc 191
            |||||||||||||||||||||
Sbjct: 2447 gcctggccctgtgcctgtgcc 2467
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>ref|XM_651116.1| Entamoeba histolytica HM-1:IMSS hexosaminidase alpha chain, putative
            (16.t00041) partial mRNA
          Length = 1692

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 269  ggaggtgatgaagttgataac 289
            |||||||||||||||||||||
Sbjct: 1033 ggaggtgatgaagttgataac 1053
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>emb|AL359399.3|CNS05TEV Human chromosome 14 DNA sequence BAC C-2223O18 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 134213

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 171   gcctggccctgtgcctgtgcc 191
             |||||||||||||||||||||
Sbjct: 44490 gcctggccctgtgcctgtgcc 44470
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>gb|AC138196.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0032M21 map C83B, complete sequence
          Length = 48636

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  ctaggaagtaggaactagga 160
            ||||||||||||||||||||
Sbjct: 2963 ctaggaagtaggaactagga 2982
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>gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0040B10
              map R2918, complete sequence
          Length = 149132

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    ctaggaagtaggaactagga 160
              ||||||||||||||||||||
Sbjct: 121958 ctaggaagtaggaactagga 121977
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>gb|BC074304.1| Xenopus laevis MGC84108 protein, mRNA (cDNA clone MGC:84108
            IMAGE:6950072), complete cds
          Length = 2891

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  taggaagtaggaactaggaa 161
            ||||||||||||||||||||
Sbjct: 2538 taggaagtaggaactaggaa 2557
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>gb|AC125254.9| Mus musculus chromosome 9, clone RP24-156I15, complete sequence
          Length = 161503

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   tggccctgtgcctgtgccac 193
             ||||||||||||||||||||
Sbjct: 81891 tggccctgtgcctgtgccac 81910
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>gb|BC053916.1| Mus musculus leucyl-tRNA synthetase, mitochondrial, mRNA (cDNA clone
            IMAGE:6311796), containing frame-shift errors
          Length = 3798

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  tggccctgtgcctgtgccac 193
            ||||||||||||||||||||
Sbjct: 1460 tggccctgtgcctgtgccac 1479
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>emb|BX247869.21| Zebrafish DNA sequence from clone CH211-67D2 in linkage group 21,
             complete sequence
          Length = 181119

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   tctccgttgaactccgtcac 268
             ||||||||||||||||||||
Sbjct: 42688 tctccgttgaactccgtcac 42669
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>ref|XM_687147.1| PREDICTED: Danio rerio similar to Protein FAM57B (LOC563785), mRNA
          Length = 4248

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 249  tctccgttgaactccgtcac 268
            ||||||||||||||||||||
Sbjct: 2915 tctccgttgaactccgtcac 2934
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>dbj|AK053667.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130119L14 product:leucyl-tRNA synthetase,
            mitochondrial, full insert sequence
          Length = 3876

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  tggccctgtgcctgtgccac 193
            ||||||||||||||||||||
Sbjct: 1579 tggccctgtgcctgtgccac 1598
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>dbj|AK045640.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230217F11 product:leucyl-tRNA
            synthetase, mitochondrial, full insert sequence
          Length = 2022

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  tggccctgtgcctgtgccac 193
            ||||||||||||||||||||
Sbjct: 1543 tggccctgtgcctgtgccac 1562
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>dbj|AK037012.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930037O15 product:leucyl-tRNA synthetase,
            mitochondrial, full insert sequence
          Length = 3415

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  tggccctgtgcctgtgccac 193
            ||||||||||||||||||||
Sbjct: 1591 tggccctgtgcctgtgccac 1610
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>dbj|AK032695.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
            region cDNA, RIKEN full-length enriched library,
            clone:6720401G19 product:leucyl-tRNA synthetase,
            mitochondrial, full insert sequence
          Length = 3884

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  tggccctgtgcctgtgccac 193
            ||||||||||||||||||||
Sbjct: 1589 tggccctgtgcctgtgccac 1608
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 141     ctaggaagtaggaactagga 160
               ||||||||||||||||||||
Sbjct: 2469861 ctaggaagtaggaactagga 2469880
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>ref|XM_343511.2| PREDICTED: Rattus norvegicus leucyl-tRNA synthetase, mitochondrial
            (predicted) (Lars2_predicted), mRNA
          Length = 2900

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  tggccctgtgcctgtgccac 193
            ||||||||||||||||||||
Sbjct: 1468 tggccctgtgcctgtgccac 1487
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>gb|BC080303.1| Mus musculus leucyl-tRNA synthetase, mitochondrial, mRNA (cDNA clone
            MGC:90750 IMAGE:5695617), complete cds
          Length = 3788

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  tggccctgtgcctgtgccac 193
            ||||||||||||||||||||
Sbjct: 1471 tggccctgtgcctgtgccac 1490
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 141     ctaggaagtaggaactagga 160
               ||||||||||||||||||||
Sbjct: 2477597 ctaggaagtaggaactagga 2477616
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>ref|NM_153168.1| Mus musculus leucyl-tRNA synthetase, mitochondrial (Lars2), nuclear
            gene encoding mitochondrial protein, mRNA
          Length = 3882

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  tggccctgtgcctgtgccac 193
            ||||||||||||||||||||
Sbjct: 1584 tggccctgtgcctgtgccac 1603
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>emb|AL773585.7| Mouse DNA sequence from clone RP23-16D18 on chromosome 2, complete
            sequence
          Length = 207100

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 178  cctgtgcctgtgccaccttg 197
            ||||||||||||||||||||
Sbjct: 5704 cctgtgcctgtgccaccttg 5685
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>emb|AJ428066.1|MMU428066 Mus musculus mRNA for leucyl-tRNA synthetase (Kiaa0028 gene)
          Length = 3882

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  tggccctgtgcctgtgccac 193
            ||||||||||||||||||||
Sbjct: 1584 tggccctgtgcctgtgccac 1603
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>emb|AL669911.16| Mouse DNA sequence from clone RP23-65G8 on chromosome 11, complete
             sequence
          Length = 205030

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   aagaggtctccgttgaactc 262
             ||||||||||||||||||||
Sbjct: 93062 aagaggtctccgttgaactc 93043


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,401,433
Number of Sequences: 3902068
Number of extensions: 2401433
Number of successful extensions: 57381
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57295
Number of HSP's gapped (non-prelim): 86
length of query: 300
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 278
effective length of database: 17,147,199,772
effective search space: 4766921536616
effective search space used: 4766921536616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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