ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast58h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP002004.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 44 0.20
2emb|AL773547.6| Mouse DNA sequence from clone RP23-243E14 on chr... 44 0.20
3gb|AC166111.4| Mus musculus BAC clone RP23-68O7 from chromosome ... 42 0.81
4gb|AC161253.2| Mus musculus BAC clone RP24-165J6 from chromosome... 42 0.81
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.81
6gb|AC019129.8| Homo sapiens BAC clone RP11-559M23 from 2, comple... 42 0.81
7gb|AC108391.14| Mus musculus chromosome 1, clone RP23-16N14, com... 42 0.81
8emb|AL954379.17| Mouse DNA sequence from clone RP24-162K15 on ch... 42 0.81
9emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4,... 42 0.81
10emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4,... 42 0.81
11gb|AC165954.3| Mus musculus BAC clone RP23-450F5 from chromosome... 42 0.81
12gb|AC022062.10| Mus musculus chromosome 5, clone RP23-57P23, com... 40 3.2
13gb|AC118928.13| Mus musculus chromosome 16, clone RP23-416J10, c... 40 3.2
14gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosom... 40 3.2
15emb|BX324117.16| Mouse DNA sequence from clone RP23-389N3 on chr... 40 3.2
16gb|AC141209.11| Mus musculus chromosome 3, clone RP23-199M5, com... 40 3.2
17emb|CR974485.12| Mouse DNA sequence from clone RP23-112H14 on ch... 40 3.2

>dbj|AP002004.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-693N9, complete
              sequence
          Length = 172081

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 155    attacacagtgatatatgacct 176
              ||||||||||||||||||||||
Sbjct: 148689 attacacagtgatatatgacct 148710



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>emb|AL773547.6| Mouse DNA sequence from clone RP23-243E14 on chromosome X, complete
             sequence
          Length = 161816

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 18    caatataaattctgtaccaatt 39
             ||||||||||||||||||||||
Sbjct: 63636 caatataaattctgtaccaatt 63657



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>gb|AC166111.4| Mus musculus BAC clone RP23-68O7 from chromosome 1, complete sequence
          Length = 185692

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 18     caatataaattctgtaccaat 38
              |||||||||||||||||||||
Sbjct: 144975 caatataaattctgtaccaat 144995



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>gb|AC161253.2| Mus musculus BAC clone RP24-165J6 from chromosome 12, complete sequence
          Length = 156976

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 18     caatataaattctgtaccaat 38
              |||||||||||||||||||||
Sbjct: 145454 caatataaattctgtaccaat 145434



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 95       catttcttgggtaaaaaactg 115
                |||||||||||||||||||||
Sbjct: 30276636 catttcttgggtaaaaaactg 30276656



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>gb|AC019129.8| Homo sapiens BAC clone RP11-559M23 from 2, complete sequence
          Length = 172611

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 147    agcaatgaattacacagtgat 167
              |||||||||||||||||||||
Sbjct: 121429 agcaatgaattacacagtgat 121409



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>gb|AC108391.14| Mus musculus chromosome 1, clone RP23-16N14, complete sequence
          Length = 257730

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 18    caatataaattctgtaccaat 38
             |||||||||||||||||||||
Sbjct: 99028 caatataaattctgtaccaat 99048



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>emb|AL954379.17| Mouse DNA sequence from clone RP24-162K15 on chromosome 4, complete
             sequence
          Length = 72483

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 18    caatataaattctgtaccaat 38
             |||||||||||||||||||||
Sbjct: 53767 caatataaattctgtaccaat 53787



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>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12,
              complete sequence
          Length = 186142

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 95     catttcttgggtaaaaaactg 115
              |||||||||||||||||||||
Sbjct: 172949 catttcttgggtaaaaaactg 172969



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>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12,
             complete sequence
          Length = 160989

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    catttcttgggtaaaaaactg 115
             |||||||||||||||||||||
Sbjct: 26532 catttcttgggtaaaaaactg 26552



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>gb|AC165954.3| Mus musculus BAC clone RP23-450F5 from chromosome 12, complete sequence
          Length = 184826

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 18     caatataaattctgtaccaat 38
              |||||||||||||||||||||
Sbjct: 121515 caatataaattctgtaccaat 121535



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>gb|AC022062.10| Mus musculus chromosome 5, clone RP23-57P23, complete sequence
          Length = 235363

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     tgaactggagaacatttctt 102
              ||||||||||||||||||||
Sbjct: 123197 tgaactggagaacatttctt 123178



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>gb|AC118928.13| Mus musculus chromosome 16, clone RP23-416J10, complete sequence
          Length = 238516

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     aatataaattctgtaccaat 38
              ||||||||||||||||||||
Sbjct: 224216 aatataaattctgtaccaat 224197



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>gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosome 16, complete sequence
          Length = 181697

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     aatataaattctgtaccaat 38
              ||||||||||||||||||||
Sbjct: 127516 aatataaattctgtaccaat 127535



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>emb|BX324117.16| Mouse DNA sequence from clone RP23-389N3 on chromosome X, complete
             sequence
          Length = 155139

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    aatataaattctgtaccaat 38
             ||||||||||||||||||||
Sbjct: 34837 aatataaattctgtaccaat 34856



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>gb|AC141209.11| Mus musculus chromosome 3, clone RP23-199M5, complete sequence
          Length = 192274

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    atataaattctgtaccaatt 39
             ||||||||||||||||||||
Sbjct: 34631 atataaattctgtaccaatt 34612



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>emb|CR974485.12| Mouse DNA sequence from clone RP23-112H14 on chromosome 12, complete
              sequence
          Length = 219570

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     caatataaattctgtaccaa 37
              ||||||||||||||||||||
Sbjct: 184040 caatataaattctgtaccaa 184059


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,254,587
Number of Sequences: 3902068
Number of extensions: 2254587
Number of successful extensions: 39888
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39855
Number of HSP's gapped (non-prelim): 33
length of query: 248
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 226
effective length of database: 17,147,199,772
effective search space: 3875267148472
effective search space used: 3875267148472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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