>YSI1_CAEEL (Q10033) Hypothetical protein F15G9.1|
          Length = 279

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 239 PEALPEKQAHGLPSPTKSSDLFKSGQT*MGLPKE 138
           P  L  K+  G+P P KSSD+ K G     LPK+
Sbjct: 203 PTVLNAKKLGGIPWPPKSSDVKKEGGDAEALPKK 236

>TRUC_PECCC (Q47417) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 376

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 277 GGEERPRRWSCASQKPFLRNKPMVSLAQQKALTCLSRARHKWAFPK 140
           G ++RPRR+ C S      + PM  +AQ   L  + +  H  A  K
Sbjct: 85  GRQKRPRRFCCVSSSSMSYSPPMYRMAQCTMLEIIYQDEHLVAVNK 130

>MG42_TARMA (P40651) SRY-related protein MG42 (Fragment)|
          Length = 72

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 163 WPDLNKSELFVGLGRPW 213
           WPD++ +E+   LGRPW
Sbjct: 23  WPDMHNAEISKRLGRPW 39

>KIF1A_HUMAN (Q12756) Kinesin-like protein KIF1A (Axonal transporter of synaptic|
            vesicles)
          Length = 1690

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 242  EPEALPEKQAHGLPSPTKSSDLFKSGQ 162
            EPE LPE  +  LPSP ++++  K  Q
Sbjct: 1534 EPELLPEADSKKLPSPARATETDKEPQ 1560

>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA
           protein kinase)
          Length = 1007

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 108 RFLTLRSFRYFFGKAHLCL 164
           +F  LR FR+F+ K HLCL
Sbjct: 747 KFHCLRLFRHFYHKQHLCL 765

>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4
           kinase)
          Length = 1007

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 108 RFLTLRSFRYFFGKAHLCL 164
           +F  LR FR+F+ K HLCL
Sbjct: 747 KFHCLRLFRHFYHKQHLCL 765


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,517,587
Number of Sequences: 219361
Number of extensions: 808341
Number of successful extensions: 2046
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2044
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)