>gb|AY106990.1| Zea mays PCO149295 mRNA sequence
          Length = 778

 Score =  115 bits (58), Expect = 9e-23
 Identities = 61/62 (98%)
 Strand = Plus / Minus

                                                                       
Query: 248 gcggtacatgggctccgggacctcgtcggcgcgcgagcagcaccggcagccgccgtagta 307
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 369 gcggtacatgggctccgggacctcgtcggcgcgcgagcagcaccggcagccgccatagta 310

             
Query: 308 cc 309
           ||
Sbjct: 309 cc 308

>emb|Z48625.1|HVGRP2 H.vulgare mRNA for glycine rich protein
          Length = 433

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 241 cctcggcgcggtacatgggctccgggacctcgtcggcgcgcgagcagcaccggcagcc 298
           |||| ||||||||||||||||| ||||||||||| |||||||  ||||| ||||||||
Sbjct: 184 cctccgcgcggtacatgggctcagggacctcgtccgcgcgcgcacagcagcggcagcc 127

>ref|XM_466439.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 775

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 248 gcggtacatgggctccgggacctcgtcggcgcgcgagcagcaccggcagccgccg 302
           |||||||||||||||||||| |||||||| || || |||||| ||||| ||||||
Sbjct: 447 gcggtacatgggctccgggatctcgtcggggctcgcgcagcagcggcatccgccg 393

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                       
Query: 248      gcggtacatgggctccgggacctcgtcggcgcgcgagcagcaccggcagccgccg 302
                |||||||||||||||||||| |||||||| || || |||||| ||||| ||||||
Sbjct: 22646245 gcggtacatgggctccgggatctcgtcggggctcgcgcagcagcggcatccgccg 22646191



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 239      cgcctcggcgcggtacatgggctccgggacctcgtcggcg 278
                |||||||| |||||||||||| |||||   ||||||||||
Sbjct: 22642267 cgcctcggggcggtacatggggtccggcttctcgtcggcg 22642228

>dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0056I22
          Length = 147728

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                    
Query: 248   gcggtacatgggctccgggacctcgtcggcgcgcgagcagcaccggcagccgccg 302
             |||||||||||||||||||| |||||||| || || |||||| ||||| ||||||
Sbjct: 94056 gcggtacatgggctccgggatctcgtcggggctcgcgcagcagcggcatccgccg 94002



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 239   cgcctcggcgcggtacatgggctccgggacctcgtcggcg 278
             |||||||| |||||||||||| |||||   ||||||||||
Sbjct: 90078 cgcctcggggcggtacatggggtccggcttctcgtcggcg 90039

>dbj|AP005643.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBb0046O12
          Length = 128223

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                   
Query: 248  gcggtacatgggctccgggacctcgtcggcgcgcgagcagcaccggcagccgccg 302
            |||||||||||||||||||| |||||||| || || |||||| ||||| ||||||
Sbjct: 5041 gcggtacatgggctccgggatctcgtcggggctcgcgcagcagcggcatccgccg 4987



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 239  cgcctcggcgcggtacatgggctccgggacctcgtcggcg 278
            |||||||| |||||||||||| |||||   ||||||||||
Sbjct: 1063 cgcctcggggcggtacatggggtccggcttctcgtcggcg 1024

>dbj|AK062460.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D05, full
           insert sequence
          Length = 775

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 248 gcggtacatgggctccgggacctcgtcggcgcgcgagcagcaccggcagccgccg 302
           |||||||||||||||||||| |||||||| || || |||||| ||||| ||||||
Sbjct: 447 gcggtacatgggctccgggatctcgtcggggctcgcgcagcagcggcatccgccg 393

>emb|X52580.1|HVGRP Barley grp gene for glycine rich protein
          Length = 1877

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 260  ctccgggacctcgtcggcgcgcgagcagcaccggcagcc 298
            |||||| ||||||||||||||||  ||||| ||||||||
Sbjct: 1544 ctccggaacctcgtcggcgcgcgcacagcagcggcagcc 1506

>gb|AY104712.1| Zea mays PCO072958 mRNA sequence
          Length = 772

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 280 gcgagcagcaccggcagccgcc 301
           ||||||||||||||||||||||
Sbjct: 408 gcgagcagcaccggcagccgcc 387

>emb|AJ011500.1|SVI011500 Streptomyces violaceoruber Tu22 granaticin biosynthetic gene cluster
          Length = 39250

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 279   cgcgagcagcaccggcagccg 299
             |||||||||||||||||||||
Sbjct: 26654 cgcgagcagcaccggcagccg 26674

>gb|AY643793.1| Danio rerio Pitx3 gene, complete cds
          Length = 17400

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 101   cataaacacacatcaacacat 121
             |||||||||||||||||||||
Sbjct: 11086 cataaacacacatcaacacat 11106

>gb|AY107750.1| Zea mays PCO107612 mRNA sequence
          Length = 1158

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 219 tcggctcaggggtgcacctccgcct 243
           ||||| |||||||||||||||||||
Sbjct: 742 tcggcccaggggtgcacctccgcct 718

>gb|AY921640.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR3) mRNA, complete
           cds
          Length = 1431

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 262 ccgggacctcgtcggcgcgc 281
           ||||||||||||||||||||
Sbjct: 533 ccgggacctcgtcggcgcgc 514

>ref|XM_466437.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 696

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 239 cgcctcggcgcggtacatgggctccgggacctcgtcggcg 278
           |||||||| |||||||||||| |||||   ||||||||||
Sbjct: 409 cgcctcggggcggtacatggggtccggcttctcgtcggcg 370

>ref|XM_466438.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 655

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 239 cgcctcggcgcggtacatgggctccgggacctcgtcggcg 278
           |||||||| |||||||||||| |||||   ||||||||||
Sbjct: 371 cgcctcggggcggtacatggggtccggcttctcgtcggcg 332

>gb|AY043299.1| Aeromonas salmonicida plasmid pRAS3.2, complete sequence
          Length = 11823

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   gcgcgagcagcaccggcagc 297
             ||||||||||||||||||||
Sbjct: 10240 gcgcgagcagcaccggcagc 10221

>gb|AY043298.1| Aeromonas salmonicida subsp. salmonicida plasmid pRAS3.1, complete
             sequence
          Length = 11851

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   gcgcgagcagcaccggcagc 297
             ||||||||||||||||||||
Sbjct: 10262 gcgcgagcagcaccggcagc 10243

>gb|AY428550.1| Chlamydia suis strain R19 invasin-like protein gene, partial cds;
             insertion sequence IScs605, complete sequence; TetR(C)
             (tetR(C)), Tet(C) (tet(C)), MobE (mobE), MobD (mobD), MobC
             (mobC), MobB (mobB), MobA (mobA), RepA (repA), and RepC
             (repC) genes, complete cds; and invasin-like protein gene,
             partial cds
          Length = 13245

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   gcgcgagcagcaccggcagc 297
             ||||||||||||||||||||
Sbjct: 10260 gcgcgagcagcaccggcagc 10279

>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 278     gcgcgagcagcaccggcagc 297
               ||||||||||||||||||||
Sbjct: 3339077 gcgcgagcagcaccggcagc 3339096

>gb|AC121290.6| Mus musculus chromosome 16, clone RP23-84N4, complete sequence
          Length = 241184

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     ctttttattccataaacaca 40
              ||||||||||||||||||||
Sbjct: 113073 ctttttattccataaacaca 113092



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    ctttttattccataaacaca 40
             ||||||||||||||||||||
Sbjct: 89055 ctttttattccataaacaca 89074

>emb|AL450324.10| Human DNA sequence from clone RP11-307F22 on chromosome 6, complete
             sequence
          Length = 101846

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   ataaacacacatcaacacat 121
             ||||||||||||||||||||
Sbjct: 15767 ataaacacacatcaacacat 15786

>emb|AL109615.42|HS1120P11 Human DNA sequence from clone RP5-1120P11 on chromosome 6p12.3-21.2,
             complete sequence
          Length = 146655

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    cacaccataaacacacatca 115
             ||||||||||||||||||||
Sbjct: 85897 cacaccataaacacacatca 85916

>gb|AC108451.9| Homo sapiens chromosome 15, clone RP11-379K22, complete sequence
          Length = 198707

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    cacaccataaacacacatca 115
             ||||||||||||||||||||
Sbjct: 36397 cacaccataaacacacatca 36378

>dbj|AK097452.1| Homo sapiens cDNA FLJ40133 fis, clone TESTI2012231
          Length = 1777

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  cacaccataaacacacatca 115
           ||||||||||||||||||||
Sbjct: 603 cacaccataaacacacatca 622

>gb|AC182636.3| Pan troglodytes BAC clone CH251-519F5 from chromosome 6, complete
             sequence
          Length = 197430

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   ataaacacacatcaacacat 121
             ||||||||||||||||||||
Sbjct: 30041 ataaacacacatcaacacat 30060

>gb|AC182427.3| Pan troglodytes BAC clone CH251-692F19 from chromosome 6, complete
              sequence
          Length = 168190

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    ataaacacacatcaacacat 121
              ||||||||||||||||||||
Sbjct: 102265 ataaacacacatcaacacat 102284

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 281     cgagcagcaccggcagccgc 300
               ||||||||||||||||||||
Sbjct: 3300309 cgagcagcaccggcagccgc 3300328

>gb|AC016705.4|AC016705 Homo sapiens BAC clone RP11-210M15 from 15, complete sequence
          Length = 177964

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     cacaccataaacacacatca 115
              ||||||||||||||||||||
Sbjct: 160521 cacaccataaacacacatca 160502

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 233     cacctccgcctcggcgcggt 252
               ||||||||||||||||||||
Sbjct: 1727421 cacctccgcctcggcgcggt 1727402

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 232     gcacctccgcctcggcgcgg 251
               ||||||||||||||||||||
Sbjct: 6005508 gcacctccgcctcggcgcgg 6005489

>dbj|AK105378.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-F02, full
           insert sequence
          Length = 655

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 239 cgcctcggcgcggtacatgggctccgggacctcgtcggcg 278
           |||||||| |||||||||||| |||||   ||||||||||
Sbjct: 371 cgcctcggggcggtacatggggtccggcttctcgtcggcg 332

>dbj|AK063583.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-H12, full
           insert sequence
          Length = 696

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 239 cgcctcggcgcggtacatgggctccgggacctcgtcggcg 278
           |||||||| |||||||||||| |||||   ||||||||||
Sbjct: 409 cgcctcggggcggtacatggggtccggcttctcgtcggcg 370

>emb|BX324161.3| Mouse DNA sequence from clone RP23-385D8 on chromosome 4, complete
             sequence
          Length = 45041

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 100   ccataaacacacatcaacacatac 123
             |||||||||||||| |||||||||
Sbjct: 31416 ccataaacacacatgaacacatac 31393

>gb|M57717.1|TFETFFC2 Plasmid pTF-FC2 from Thiobacillus ferrooxidans mobA, mobB, mobC,
           mobD, mobE genes, complete cds, ORF's 3, 5 and 8,
           complete cds, and merR gene, 3' end
          Length = 5317

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 gcgcgagcagcaccggcagc 297
           ||||||||||||||||||||
Sbjct: 268 gcgcgagcagcaccggcagc 249


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,376,479
Number of Sequences: 3902068
Number of extensions: 2376479
Number of successful extensions: 44221
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43827
Number of HSP's gapped (non-prelim): 394
length of query: 309
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 287
effective length of database: 17,147,199,772
effective search space: 4921246334564
effective search space used: 4921246334564
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)