ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast58b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VGL2_EBV (P03218) Probable membrane glycoprotein 28 5.3
2TPSD3_ABIGR (O24475) Pinene synthase, chloroplast precursor (EC ... 28 9.0

>VGL2_EBV (P03218) Probable membrane glycoprotein|
          Length = 248

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 137 WRRGFTWFYLPQRWVTCAFVLPVVSLYVVS 48
           WR   TW +     +TCA V PV+ + ++S
Sbjct: 201 WRPKTTWVHWALLLITCAVVAPVLLIIIIS 230



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>TPSD3_ABIGR (O24475) Pinene synthase, chloroplast precursor (EC 4.2.3.14)|
           (Beta-geraniolene synthase) ((-)-(1S,5S)-pinene
           synthase) (Agg-pin1)
          Length = 628

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +3

Query: 6   KKTVHSSVISKALITYNIQGDYGKDESTSDPSLGQVKPGKSTTPTLNTSGT 158
           K  +H S+IS    T+ +     K  S + P+LG  + GKS TP+++ S T
Sbjct: 12  KSCLHKSLISS---THEL-----KALSRTIPALGMSRRGKSITPSISMSST 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,765,671
Number of Sequences: 219361
Number of extensions: 250708
Number of successful extensions: 1144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 80,573,946
effective HSP length: 28
effective length of database: 74,431,838
effective search space used: 1786364112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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