ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast58a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_184292.2| Oryza sativa (japonica cultivar-group), mRNA 44 0.32
2ref|NM_183819.1| Oryza sativa (japonica cultivar-group), predic... 44 0.32
3ref|XM_368940.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 44 0.32
4gb|AC108502.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.32
5gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.32
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
8dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
9dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
10dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
11dbj|AK099260.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.32
12dbj|AK099241.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.32
13dbj|AK071117.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.32
14dbj|AK068990.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.32
15dbj|AK068063.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.32
16dbj|AK058468.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.32
17tpe|BN000545.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 44 0.32
18emb|AL824712.8| Mouse DNA sequence from clone RP23-430M12 on chr... 44 0.32
19gb|AY177752.1| Lamprocystis purpurea chlorophylide reductase sub... 42 1.3
20gb|AC127594.3| Mus musculus BAC clone RP23-44G8 from chromosome ... 42 1.3
21gb|AC141323.9| Medicago truncatula clone mth2-6a23, complete seq... 42 1.3
22gb|AC149805.12| Medicago truncatula clone mth2-146o17, complete ... 42 1.3
23emb|AL359500.10| Human DNA sequence from clone RP11-394J19 on ch... 42 1.3
24emb|BX469920.6| Zebrafish DNA sequence from clone DKEY-237J21 in... 42 1.3
25gb|AC166147.8| Medicago truncatula clone mth2-145g3, complete se... 42 1.3
26emb|AJ565431.1|BBA565431 Bacteroidetes bacterium MWH-CFBk5 parti... 42 1.3
27gb|AC138718.3| Mus musculus BAC clone RP23-221F8 from 14, comple... 42 1.3
28gb|AC164981.2| Mus musculus BAC clone RP23-121F5 from chromosome... 40 5.0
29ref|XM_470205.1| Oryza sativa (japonica cultivar-group), predic... 40 5.0
30gb|AY916271.1| Uncultured bacterium clone N064 16S ribosomal RNA... 40 5.0
31gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 5.0
32gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 40 5.0
33gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.0
34gb|AC159619.2| Mus musculus BAC clone RP24-392J3 from chromosome... 40 5.0
35emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.0
36emb|AL844182.10| Mouse DNA sequence from clone RP23-399H17 on ch... 40 5.0
37emb|BX649302.22| Zebrafish DNA sequence from clone CH211-248I6 i... 40 5.0
38gb|AC023736.4| Drosophila melanogaster X BAC RP98-4P5 (Roswell P... 40 5.0
39gb|AE012334.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 5.0
40gb|AC007114.8| Homo sapiens chromosome 17, clone RP11-166P13, co... 40 5.0
41emb|AJ619704.1| Uncultured bacterium partial 16S rRNA gene, clon... 40 5.0
42gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 gen... 40 5.0
43gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 5.0
44gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 5.0
45dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
46dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
47gb|AC005041.2|AC005041 Homo sapiens BAC clone RP11-523H20 from C... 40 5.0
48gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
49dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.0
50emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in... 40 5.0
51gb|AC153884.1| Mus musculus 6 BAC RP23-476E22 (Roswell Park Can... 40 5.0
52gb|AC158677.2| Mus musculus 6 BAC RP23-175H4 (Roswell Park Cance... 40 5.0
53emb|BX284648.12| Mouse DNA sequence from clone RP23-300F1 on chr... 40 5.0
54dbj|AK110150.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
55gb|AC154475.2| Mus musculus BAC clone RP24-130B12 from 17, compl... 40 5.0
56emb|AL096869.8|CNS00YVH Human chromosome 14 DNA sequence BAC R-1... 40 5.0
57gb|AC003950.1|AC003950 Homo sapiens chromosome 17, clone hCIT.12... 40 5.0
58gb|AE003443.2| Drosophila melanogaster chromosome X, section 27 ... 40 5.0
59gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
60gb|AC140221.3| Mus musculus BAC clone RP23-281K10 from 5, comple... 40 5.0
61emb|AL139193.4|CNS01DXA Human chromosome 14 DNA sequence BAC R-6... 40 5.0
62dbj|AB025387.1| Haliotis discus discus DNA, CA repeat region 40 5.0 
>ref|NM_184292.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1833

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 337  tagcacttgtcggcggtgaagccgacggtg 366
            |||||||||| || ||||||||||||||||
Sbjct: 1545 tagcacttgttggtggtgaagccgacggtg 1516
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>ref|NM_183819.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1056

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 71   catccatggcgacggcgagctcgagc 96
            ||||||||||| ||||||||||||||
Sbjct: 1030 catccatggcggcggcgagctcgagc 1005
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>ref|XM_368940.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00304.4) partial mRNA
          Length = 2325

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 43  agtagtagaagcagcacgcacg 64
           ||||||||||||||||||||||
Sbjct: 169 agtagtagaagcagcacgcacg 190
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>gb|AC108502.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1378_A04,
             complete sequence
          Length = 103458

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 73    tccatggcgacggcgagctcga 94
             ||||||||||||||||||||||
Sbjct: 73213 tccatggcgacggcgagctcga 73234
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>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07,
             complete sequence
          Length = 106166

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 73    tccatggcgacggcgagctcga 94
             ||||||||||||||||||||||
Sbjct: 36700 tccatggcgacggcgagctcga 36721
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 73       tccatggcgacggcgagctcga 94
                ||||||||||||||||||||||
Sbjct: 21057835 tccatggcgacggcgagctcga 21057856
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 71       catccatggcgacggcgagctcgagc 96
                ||||||||||| ||||||||||||||
Sbjct: 12564857 catccatggcggcggcgagctcgagc 12564832



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 337     tagcacttgtcggcggtgaagccgacggtg 366
               |||||||||| || ||||||||||||||||
Sbjct: 2121032 tagcacttgttggtggtgaagccgacggtg 2121003
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>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0480E02
          Length = 141862

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 337   tagcacttgtcggcggtgaagccgacggtg 366
             |||||||||| || ||||||||||||||||
Sbjct: 42144 tagcacttgttggtggtgaagccgacggtg 42115
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>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0537A05
          Length = 152396

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 71    catccatggcgacggcgagctcgagc 96
             ||||||||||| ||||||||||||||
Sbjct: 76467 catccatggcggcggcgagctcgagc 76442
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>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1135C02
          Length = 152306

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 71     catccatggcgacggcgagctcgagc 96
              ||||||||||| ||||||||||||||
Sbjct: 150472 catccatggcggcggcgagctcgagc 150447
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>dbj|AK099260.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004C23, full
           insert sequence
          Length = 1743

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 73  tccatggcgacggcgagctcga 94
           ||||||||||||||||||||||
Sbjct: 108 tccatggcgacggcgagctcga 129
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>dbj|AK099241.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O19, full
            insert sequence
          Length = 1350

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 71   catccatggcgacggcgagctcgagc 96
            ||||||||||| ||||||||||||||
Sbjct: 1072 catccatggcggcggcgagctcgagc 1047
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>dbj|AK071117.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080D08, full
           insert sequence
          Length = 1314

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 73  tccatggcgacggcgagctcga 94
           ||||||||||||||||||||||
Sbjct: 115 tccatggcgacggcgagctcga 136
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>dbj|AK068990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170M01, full
            insert sequence
          Length = 1833

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 337  tagcacttgtcggcggtgaagccgacggtg 366
            |||||||||| || ||||||||||||||||
Sbjct: 1545 tagcacttgttggtggtgaagccgacggtg 1516
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>dbj|AK068063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129I12, full
            insert sequence
          Length = 1348

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 71   catccatggcgacggcgagctcgagc 96
            ||||||||||| ||||||||||||||
Sbjct: 1070 catccatggcggcggcgagctcgagc 1045
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>dbj|AK058468.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B07,
          full insert sequence
          Length = 1763

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 73 tccatggcgacggcgagctcga 94
          ||||||||||||||||||||||
Sbjct: 47 tccatggcgacggcgagctcga 68
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>tpe|BN000545.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx16 gene for
            class III peroxidase 16 precursor, exons 1-2
          Length = 3775

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 71   catccatggcgacggcgagctcgagc 96
            ||||||||||| ||||||||||||||
Sbjct: 3749 catccatggcggcggcgagctcgagc 3724
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>emb|AL824712.8| Mouse DNA sequence from clone RP23-430M12 on chromosome 4, complete
            sequence
          Length = 33400

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 57   cacgcacgcacacacatccatg 78
            ||||||||||||||||||||||
Sbjct: 3529 cacgcacgcacacacatccatg 3550
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>gb|AY177752.1| Lamprocystis purpurea chlorophylide reductase subunit (bchZ) gene,
            partial cds; and puf operon, complete sequence
          Length = 7444

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 30   tcgttcacgtggcagtagtag 50
            |||||||||||||||||||||
Sbjct: 3735 tcgttcacgtggcagtagtag 3715
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>gb|AC127594.3| Mus musculus BAC clone RP23-44G8 from chromosome 7, complete sequence
          Length = 209828

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 56    gcacgcacgcacacacatcca 76
             |||||||||||||||||||||
Sbjct: 71138 gcacgcacgcacacacatcca 71118
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>gb|AC141323.9| Medicago truncatula clone mth2-6a23, complete sequence
          Length = 132894

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    gcacgcacgcacacacatcca 76
             |||||||||||||||||||||
Sbjct: 57057 gcacgcacgcacacacatcca 57077
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>gb|AC149805.12| Medicago truncatula clone mth2-146o17, complete sequence
          Length = 89758

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    gcacgcacgcacacacatcca 76
             |||||||||||||||||||||
Sbjct: 89205 gcacgcacgcacacacatcca 89225
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>emb|AL359500.10| Human DNA sequence from clone RP11-394J19 on chromosome 13, complete
             sequence
          Length = 60712

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 210   ccaaagcaagcacaggctggcatta 234
             |||||||||||||||||||| ||||
Sbjct: 13814 ccaaagcaagcacaggctgggatta 13790
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>emb|BX469920.6| Zebrafish DNA sequence from clone DKEY-237J21 in linkage group 24,
             complete sequence
          Length = 123617

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    gcacgcacgcacacacatcca 76
             |||||||||||||||||||||
Sbjct: 11428 gcacgcacgcacacacatcca 11448
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>gb|AC166147.8| Medicago truncatula clone mth2-145g3, complete sequence
          Length = 126336

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    gcacgcacgcacacacatcca 76
             |||||||||||||||||||||
Sbjct: 22968 gcacgcacgcacacacatcca 22988
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>emb|AJ565431.1|BBA565431 Bacteroidetes bacterium MWH-CFBk5 partial 16S rRNA gene, isolate
           MWH-CFBk5
          Length = 1427

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 196 cccatccatcaccgccaaagc 216
           |||||||||||||||||||||
Sbjct: 199 cccatccatcaccgccaaagc 179
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>gb|AC138718.3| Mus musculus BAC clone RP23-221F8 from 14, complete sequence
          Length = 238536

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 52     agcagcacgcacgcacacaca 72
              |||||||||||||||||||||
Sbjct: 183095 agcagcacgcacgcacacaca 183115
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>gb|AC164981.2| Mus musculus BAC clone RP23-121F5 from chromosome 17, complete sequence
          Length = 243701

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    cacgcacgcacacacatcca 76
             ||||||||||||||||||||
Sbjct: 14348 cacgcacgcacacacatcca 14329
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>ref|XM_470205.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2172

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 75   catggcgacggcgagctcga 94
            ||||||||||||||||||||
Sbjct: 1980 catggcgacggcgagctcga 1961
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>gb|AY916271.1| Uncultured bacterium clone N064 16S ribosomal RNA gene, partial
           sequence
          Length = 1361

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 195 ccccatccatcaccgccaaa 214
           ||||||||||||||||||||
Sbjct: 211 ccccatccatcaccgccaaa 192
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    accccatccatcaccgccaa 213
              ||||||||||||||||||||
Sbjct: 866782 accccatccatcaccgccaa 866801
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 55    agcacgcacgcacacacatccatg 78
             ||||||||||||||||| ||||||
Sbjct: 79707 agcacgcacgcacacacttccatg 79730
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 75      catggcgacggcgagctcga 94
               ||||||||||||||||||||
Sbjct: 2495699 catggcgacggcgagctcga 2495718
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>gb|AC159619.2| Mus musculus BAC clone RP24-392J3 from chromosome 12, complete sequence
          Length = 171965

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   ggcctttgcctttcccaaag 266
             ||||||||||||||||||||
Sbjct: 93013 ggcctttgcctttcccaaag 92994
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 194     accccatccatcaccgccaa 213
               ||||||||||||||||||||
Sbjct: 2185403 accccatccatcaccgccaa 2185422
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>emb|AL844182.10| Mouse DNA sequence from clone RP23-399H17 on chromosome 4, complete
             sequence
          Length = 201590

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    agcacgcacgcacacacatc 74
             ||||||||||||||||||||
Sbjct: 96434 agcacgcacgcacacacatc 96453
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>emb|BX649302.22| Zebrafish DNA sequence from clone CH211-248I6 in linkage group 12,
             complete sequence
          Length = 154089

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    gcacgcacacacatccatgg 79
             ||||||||||||||||||||
Sbjct: 24042 gcacgcacacacatccatgg 24023
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>gb|AC023736.4| Drosophila melanogaster X BAC RP98-4P5 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 165052

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    gcagcacgcacgcacacaca 72
             ||||||||||||||||||||
Sbjct: 70693 gcagcacgcacgcacacaca 70674
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>gb|AE012334.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 242
            of 460 of the complete genome
          Length = 11004

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 354  gaagccgacggtgttcttggcggt 377
            ||||||| ||||||||||||||||
Sbjct: 3861 gaagccgtcggtgttcttggcggt 3838
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>gb|AC007114.8| Homo sapiens chromosome 17, clone RP11-166P13, complete sequence
          Length = 148781

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 49    agaagcagcacgcacgcacacaca 72
             |||||||||| |||||||||||||
Sbjct: 16858 agaagcagcaggcacgcacacaca 16881
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>emb|AJ619704.1| Uncultured bacterium partial 16S rRNA gene, clone BVS034c43
          Length = 410

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 195 ccccatccatcaccgccaaa 214
           ||||||||||||||||||||
Sbjct: 138 ccccatccatcaccgccaaa 119
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>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete
             sequence
          Length = 139999

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    gcaaccatgaacaaattcgttcac 37
             ||||||||| ||||||||||||||
Sbjct: 77201 gcaaccatggacaaattcgttcac 77224
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 354     gaagccgacggtgttcttggcggt 377
               ||||||| ||||||||||||||||
Sbjct: 2243926 gaagccgtcggtgttcttggcggt 2243949
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 194     accccatccatcaccgccaa 213
               ||||||||||||||||||||
Sbjct: 1758872 accccatccatcaccgccaa 1758891
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 14       gcaaccatgaacaaattcgttcac 37
                ||||||||| ||||||||||||||
Sbjct: 22622532 gcaaccatggacaaattcgttcac 22622555
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 75      catggcgacggcgagctcga 94
               ||||||||||||||||||||
Sbjct: 2495809 catggcgacggcgagctcga 2495828
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>gb|AC005041.2|AC005041 Homo sapiens BAC clone RP11-523H20 from Ch2, complete sequence
          Length = 191356

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   cctttcccaaagcccctcac 274
             ||||||||||||||||||||
Sbjct: 99330 cctttcccaaagcccctcac 99311
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>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09,
             complete sequence
          Length = 106057

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    catggcgacggcgagctcga 94
             ||||||||||||||||||||
Sbjct: 68195 catggcgacggcgagctcga 68214
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 347     cggcggtgaagccgacggtg 366
               ||||||||||||||||||||
Sbjct: 3635198 cggcggtgaagccgacggtg 3635179
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>emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in linkage group 19,
             complete sequence
          Length = 180994

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    gcacgcacacacatccatgg 79
             ||||||||||||||||||||
Sbjct: 12373 gcacgcacacacatccatgg 12392
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>gb|AC153884.1| Mus musculus  6 BAC RP23-476E22 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 195597

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    atggctaccccatccatcac 207
              ||||||||||||||||||||
Sbjct: 100542 atggctaccccatccatcac 100561
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>gb|AC158677.2| Mus musculus 6 BAC RP23-175H4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 224075

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    atggctaccccatccatcac 207
              ||||||||||||||||||||
Sbjct: 211817 atggctaccccatccatcac 211836
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>emb|BX284648.12| Mouse DNA sequence from clone RP23-300F1 on chromosome 2, complete
              sequence
          Length = 128632

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     gcagcacgcacgcacacaca 72
              ||||||||||||||||||||
Sbjct: 109555 gcagcacgcacgcacacaca 109574
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>dbj|AK110150.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-161-E04, full
           insert sequence
          Length = 2826

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  catggcgacggcgagctcga 94
           ||||||||||||||||||||
Sbjct: 610 catggcgacggcgagctcga 629
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>gb|AC154475.2| Mus musculus BAC clone RP24-130B12 from 17, complete sequence
          Length = 117680

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    cacgcacgcacacacatcca 76
             ||||||||||||||||||||
Sbjct: 67120 cacgcacgcacacacatcca 67101
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>emb|AL096869.8|CNS00YVH Human chromosome 14 DNA sequence BAC R-1078H9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 228097

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   ctttcccaaagcccctcaca 275
             ||||||||||||||||||||
Sbjct: 66077 ctttcccaaagcccctcaca 66058
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>gb|AC003950.1|AC003950 Homo sapiens chromosome 17, clone hCIT.123_J_14, complete sequence
          Length = 117621

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 49  agaagcagcacgcacgcacacaca 72
           |||||||||| |||||||||||||
Sbjct: 111 agaagcagcaggcacgcacacaca 88
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>gb|AE003443.2| Drosophila melanogaster chromosome X, section 27 of 74 of the complete
              sequence
          Length = 299153

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     gcagcacgcacgcacacaca 72
              ||||||||||||||||||||
Sbjct: 227575 gcagcacgcacgcacacaca 227556
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 14       gcaaccatgaacaaattcgttcac 37
                ||||||||| ||||||||||||||
Sbjct: 22635000 gcaaccatggacaaattcgttcac 22635023
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>gb|AC140221.3| Mus musculus BAC clone RP23-281K10 from 5, complete sequence
          Length = 184203

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   ggcctttgcctttcccaaag 266
             ||||||||||||||||||||
Sbjct: 57565 ggcctttgcctttcccaaag 57546
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>emb|AL139193.4|CNS01DXA Human chromosome 14 DNA sequence BAC R-661G16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162691

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   ctttcccaaagcccctcaca 275
             ||||||||||||||||||||
Sbjct: 24515 ctttcccaaagcccctcaca 24534
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>dbj|AB025387.1| Haliotis discus discus DNA, CA repeat region
          Length = 170

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  gcagcacgcacgcacacaca 72
           ||||||||||||||||||||
Sbjct: 104 gcagcacgcacgcacacaca 123


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,482,586
Number of Sequences: 3902068
Number of extensions: 2482586
Number of successful extensions: 68857
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68412
Number of HSP's gapped (non-prelim): 445
length of query: 377
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 355
effective length of database: 17,147,199,772
effective search space: 6087255919060
effective search space used: 6087255919060
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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