ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast57g12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, complete cds Length = 1282 Score = 232 bits (117), Expect = 4e-58 Identities = 185/207 (89%), Gaps = 3/207 (1%) Strand = Plus / Minus Query: 39 agtataggcgcgaacggacaccgactagccagcacgcccgtgcattggcattcaagcacg 98 |||||| | |||||||||||||||| |||||||||||||||||||| ||||||||| ||| Sbjct: 1201 agtatacgtgcgaacggacaccgaccagccagcacgcccgtgcattcgcattcaaggacg 1142 Query: 99 cacacatcaggccatggcgaccttgtcgtgcgagcccgggcggcggagcatctcgatcgc 158 || ||||||| || |||||||||| |||| |||||||| |||||||||||||||||| | Sbjct: 1141 catacatcagcccttggcgaccttatcgtcggagcccggtcggcggagcatctcgatcac 1082 Query: 159 cccagcgtaagaagcggacgaagaggaggaggacggtttgacgaggctgcagttgaggcg 218 |||||||| | ||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1081 cccagcgt---aggcggacgaagaagaggaggccgggttgacgaggctgcagttgaggcg 1025 Query: 219 gatctggccctgcgtgccggtcttggg 245 ||||| |||||||||||||||||||| Sbjct: 1024 gatctccccctgcgtgccggtcttggg 998
>ref|XM_737243.1| Plasmodium chabaudi chabaudi microfibril-associated protein (PC000485.02.0) partial mRNA Length = 960 Score = 46.1 bits (23), Expect = 0.052 Identities = 23/23 (100%) Strand = Plus / Plus Query: 169 gaagcggacgaagaggaggagga 191 ||||||||||||||||||||||| Sbjct: 112 gaagcggacgaagaggaggagga 134
>ref|XM_755010.1| Ustilago maydis 521 hypothetical protein (UM03956.1) partial mRNA Length = 492 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 168 agaagcggacgaagaggaggaggacg 193 |||||||||||| ||||||||||||| Sbjct: 462 agaagcggacgacgaggaggaggacg 487
>ref|NM_183816.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1062 Score = 42.1 bits (21), Expect = 0.81 Identities = 33/37 (89%) Strand = Plus / Minus Query: 187 gaggacggtttgacgaggctgcagttgaggcggatct 223 |||||||| |||||| |||||||||||| ||||||| Sbjct: 983 gaggacgggttgacggcgctgcagttgagccggatct 947
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 42.1 bits (21), Expect = 0.81 Identities = 24/25 (96%) Strand = Plus / Plus Query: 169 gaagcggacgaagaggaggaggacg 193 |||| |||||||||||||||||||| Sbjct: 1651277 gaagaggacgaagaggaggaggacg 1651301
>gb|AY857755.1| Triticum monococcum peroxidase 1 (POX1) mRNA, complete cds Length = 1259 Score = 42.1 bits (21), Expect = 0.81 Identities = 27/29 (93%) Strand = Plus / Minus Query: 219 gatctggccctgcgtgccggtcttgggcg 247 ||||||||||||||| || |||||||||| Sbjct: 951 gatctggccctgcgtccctgtcttgggcg 923
>ref|XM_957839.1| Neurospora crassa OR74A hypothetical protein (NCU06216.1) partial mRNA Length = 3789 Score = 42.1 bits (21), Expect = 0.81 Identities = 27/29 (93%) Strand = Plus / Plus Query: 167 aagaagcggacgaagaggaggaggacggt 195 |||||| ||| |||||||||||||||||| Sbjct: 3674 aagaagaggaagaagaggaggaggacggt 3702
>ref|XM_326070.1| Neurospora crassa OR74A hypothetical protein (NCU06216.1) partial mRNA Length = 3789 Score = 42.1 bits (21), Expect = 0.81 Identities = 27/29 (93%) Strand = Plus / Plus Query: 167 aagaagcggacgaagaggaggaggacggt 195 |||||| ||| |||||||||||||||||| Sbjct: 3674 aagaagaggaagaagaggaggaggacggt 3702
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Minus Query: 207 gcagttgaggcggatctggccctgcgtgccggt 239 ||||||||| | ||||| ||||||||||||||| Sbjct: 12591370 gcagttgagcctgatctcgccctgcgtgccggt 12591338
>ref|XM_569755.1| Cryptococcus neoformans var. neoformans JEC21 cytoplasm protein (CNC05530) partial mRNA Length = 2291 Score = 42.1 bits (21), Expect = 0.81 Identities = 24/25 (96%) Strand = Plus / Plus Query: 169 gaagcggacgaagaggaggaggacg 193 |||| |||||||||||||||||||| Sbjct: 1469 gaagaggacgaagaggaggaggacg 1493
>ref|XM_569756.1| Cryptococcus neoformans var. neoformans JEC21 cytoplasm protein (CNC05530) partial mRNA Length = 1907 Score = 42.1 bits (21), Expect = 0.81 Identities = 24/25 (96%) Strand = Plus / Plus Query: 169 gaagcggacgaagaggaggaggacg 193 |||| |||||||||||||||||||| Sbjct: 1469 gaagaggacgaagaggaggaggacg 1493
>ref|XM_569757.1| Cryptococcus neoformans var. neoformans JEC21 cytoplasm protein (CNC05530) partial mRNA Length = 1843 Score = 42.1 bits (21), Expect = 0.81 Identities = 24/25 (96%) Strand = Plus / Plus Query: 169 gaagcggacgaagaggaggaggacg 193 |||| |||||||||||||||||||| Sbjct: 1405 gaagaggacgaagaggaggaggacg 1429
>emb|AJ276227.1|HVU276227 Hordeum vulgare partial mRNA for peroxidase (prx8 gene) Length = 930 Score = 42.1 bits (21), Expect = 0.81 Identities = 27/29 (93%) Strand = Plus / Minus Query: 219 gatctggccctgcgtgccggtcttgggcg 247 ||||||||||||||| || |||||||||| Sbjct: 884 gatctggccctgcgtccccgtcttgggcg 856
>emb|AL731867.27| Mouse DNA sequence from clone RP23-73A4 on chromosome 11 Contains the 5' end of the Kcnip1 gene for Kv channel-interacting protein 1, the Kcnmb1 gene for potassium large conductance calcium-activated channel, subfamily M, beta member 1 and the 3' end of a novel gene, complete sequence Length = 173783 Score = 42.1 bits (21), Expect = 0.81 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 aagaagcggacgaagaggaggagga 191 |||||| |||||||||||||||||| Sbjct: 24787 aagaaggggacgaagaggaggagga 24811
>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0030D15, from chromosome 3, complete sequence Length = 151972 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Plus Query: 207 gcagttgaggcggatctggccctgcgtgccggt 239 ||||||||| | ||||| ||||||||||||||| Sbjct: 85619 gcagttgagcctgatctcgccctgcgtgccggt 85651
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 agcggacgaagaggaggagga 191 ||||||||||||||||||||| Sbjct: 20349420 agcggacgaagaggaggagga 20349440
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Minus Query: 207 gcagttgaggcggatctggccctgcgtgccggt 239 ||||||||| | ||||| ||||||||||||||| Sbjct: 12588133 gcagttgagcctgatctcgccctgcgtgccggt 12588101
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.81 Identities = 33/37 (89%) Strand = Plus / Minus Query: 187 gaggacggtttgacgaggctgcagttgaggcggatct 223 |||||||| |||||| |||||||||||| ||||||| Sbjct: 12552477 gaggacgggttgacggcgctgcagttgagccggatct 12552441
>gb|AC133184.3| Mus musculus BAC clone RP24-186A17 from chromosome 5, complete sequence Length = 169357 Score = 42.1 bits (21), Expect = 0.81 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 aagaagcggacgaagaggaggagga 191 |||||||||| |||||||||||||| Sbjct: 59751 aagaagcggaggaagaggaggagga 59775
>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016D02 Length = 157822 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 agcggacgaagaggaggagga 191 ||||||||||||||||||||| Sbjct: 72815 agcggacgaagaggaggagga 72835
>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0537A05 Length = 152396 Score = 42.1 bits (21), Expect = 0.81 Identities = 33/37 (89%) Strand = Plus / Minus Query: 187 gaggacggtttgacgaggctgcagttgaggcggatct 223 |||||||| |||||| |||||||||||| ||||||| Sbjct: 64087 gaggacgggttgacggcgctgcagttgagccggatct 64051
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1135C02 Length = 152306 Score = 42.1 bits (21), Expect = 0.81 Identities = 33/37 (89%) Strand = Plus / Minus Query: 187 gaggacggtttgacgaggctgcagttgaggcggatct 223 |||||||| |||||| |||||||||||| ||||||| Sbjct: 138092 gaggacgggttgacggcgctgcagttgagccggatct 138056
>dbj|AK106109.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-D07, full insert sequence Length = 1270 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Minus Query: 207 gcagttgaggcggatctggccctgcgtgccggt 239 ||||||||| | ||||| ||||||||||||||| Sbjct: 1039 gcagttgagcctgatctcgccctgcgtgccggt 1007
>dbj|AK104573.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-H05, full insert sequence Length = 1265 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Minus Query: 207 gcagttgaggcggatctggccctgcgtgccggt 239 ||||||||| | ||||| ||||||||||||||| Sbjct: 1039 gcagttgagcctgatctcgccctgcgtgccggt 1007
>dbj|AK104508.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G09, full insert sequence Length = 1270 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Minus Query: 207 gcagttgaggcggatctggccctgcgtgccggt 239 ||||||||| | ||||| ||||||||||||||| Sbjct: 1039 gcagttgagcctgatctcgccctgcgtgccggt 1007
>dbj|AK104644.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-G05, full insert sequence Length = 1270 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Minus Query: 207 gcagttgaggcggatctggccctgcgtgccggt 239 ||||||||| | ||||| ||||||||||||||| Sbjct: 1039 gcagttgagcctgatctcgccctgcgtgccggt 1007
>dbj|AK104494.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C02, full insert sequence Length = 1252 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Minus Query: 207 gcagttgaggcggatctggccctgcgtgccggt 239 ||||||||| | ||||| ||||||||||||||| Sbjct: 1039 gcagttgagcctgatctcgccctgcgtgccggt 1007
>dbj|AK104487.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B03, full insert sequence Length = 1215 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Minus Query: 207 gcagttgaggcggatctggccctgcgtgccggt 239 ||||||||| | ||||| ||||||||||||||| Sbjct: 1039 gcagttgagcctgatctcgccctgcgtgccggt 1007
>dbj|AK104470.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D07, full insert sequence Length = 1270 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Minus Query: 207 gcagttgaggcggatctggccctgcgtgccggt 239 ||||||||| | ||||| ||||||||||||||| Sbjct: 1039 gcagttgagcctgatctcgccctgcgtgccggt 1007
>dbj|AK104395.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C06, full insert sequence Length = 1270 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Minus Query: 207 gcagttgaggcggatctggccctgcgtgccggt 239 ||||||||| | ||||| ||||||||||||||| Sbjct: 1039 gcagttgagcctgatctcgccctgcgtgccggt 1007
>dbj|AK104156.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-C01, full insert sequence Length = 1264 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Minus Query: 207 gcagttgaggcggatctggccctgcgtgccggt 239 ||||||||| | ||||| ||||||||||||||| Sbjct: 1036 gcagttgagcctgatctcgccctgcgtgccggt 1004
>dbj|AK099187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107P11, full insert sequence Length = 1271 Score = 42.1 bits (21), Expect = 0.81 Identities = 33/37 (89%) Strand = Plus / Minus Query: 187 gaggacggtttgacgaggctgcagttgaggcggatct 223 |||||||| |||||| |||||||||||| ||||||| Sbjct: 1053 gaggacgggttgacggcgctgcagttgagccggatct 1017
>dbj|AK070715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058L02, full insert sequence Length = 1492 Score = 42.1 bits (21), Expect = 0.81 Identities = 33/37 (89%) Strand = Plus / Minus Query: 187 gaggacggtttgacgaggctgcagttgaggcggatct 223 |||||||| |||||| |||||||||||| ||||||| Sbjct: 1058 gaggacgggttgacggcgctgcagttgagccggatct 1022
>dbj|AK067107.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094O18, full insert sequence Length = 1263 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Minus Query: 207 gcagttgaggcggatctggccctgcgtgccggt 239 ||||||||| | ||||| ||||||||||||||| Sbjct: 1035 gcagttgagcctgatctcgccctgcgtgccggt 1003
>dbj|AK061545.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A04, full insert sequence Length = 1031 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Minus Query: 207 gcagttgaggcggatctggccctgcgtgccggt 239 ||||||||| | ||||| ||||||||||||||| Sbjct: 803 gcagttgagcctgatctcgccctgcgtgccggt 771
>dbj|AK059977.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-B01, full insert sequence Length = 1015 Score = 42.1 bits (21), Expect = 0.81 Identities = 33/37 (89%) Strand = Plus / Minus Query: 187 gaggacggtttgacgaggctgcagttgaggcggatct 223 |||||||| |||||| |||||||||||| ||||||| Sbjct: 747 gaggacgggttgacggcgctgcagttgagccggatct 711
>tpe|BN000570.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx41 gene for class III peroxidase 41 precursor, exons 1-4 Length = 5018 Score = 42.1 bits (21), Expect = 0.81 Identities = 30/33 (90%) Strand = Plus / Minus Query: 207 gcagttgaggcggatctggccctgcgtgccggt 239 ||||||||| | ||||| ||||||||||||||| Sbjct: 5003 gcagttgagcctgatctcgccctgcgtgccggt 4971
>tpe|BN000544.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx15 gene for class III peroxidase 15 precursor, exons 1-3 Length = 5322 Score = 42.1 bits (21), Expect = 0.81 Identities = 33/37 (89%) Strand = Plus / Minus Query: 187 gaggacggtttgacgaggctgcagttgaggcggatct 223 |||||||| |||||| |||||||||||| ||||||| Sbjct: 5243 gaggacgggttgacggcgctgcagttgagccggatct 5207
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 aagcacgcacacatcaggcca 112 ||||||||||||||||||||| Sbjct: 3726479 aagcacgcacacatcaggcca 3726459
>gb|AC154880.17| Mus musculus chromosome 15, clone RP24-191N3, complete sequence Length = 184220 Score = 42.1 bits (21), Expect = 0.81 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 aagaagcggacgaagaggaggagga 191 |||||| |||||||||||||||||| Sbjct: 153236 aagaagaggacgaagaggaggagga 153260
>gb|BC043352.2| Homo sapiens zinc finger and BTB domain containing 4, mRNA (cDNA clone MGC:49935 IMAGE:6175382), complete cds Length = 5888 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 2189 ggacgaagaggaggaggacg 2208
>ref|XM_464808.1| Oryza sativa (japonica cultivar-group), mRNA Length = 411 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 gcggacgaagaggaggagga 191 |||||||||||||||||||| Sbjct: 357 gcggacgaagaggaggagga 376
>gb|AY432607.1| Aedes aegypti ASAP ID: 35787 transcription factor mRNA sequence Length = 348 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 150 ggacgaagaggaggaggacg 169
>ref|XM_871492.1| PREDICTED: Bos taurus similar to adenylate cyclase 4 (LOC619170), partial mRNA Length = 690 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 agaagcggacgaagaggaggagga 191 |||||| ||||||||||||||||| Sbjct: 71 agaagcagacgaagaggaggagga 48
>gb|DQ481665.1| Takifugu rubripes HoxBa gene cluster, complete sequence Length = 294716 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 188763 ggacgaagaggaggaggacg 188744
>gb|BC015902.1| Homo sapiens zinc finger and BTB domain containing 4, mRNA (cDNA clone IMAGE:3915660), partial cds Length = 3226 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 164 ggacgaagaggaggaggacg 183
>ref|XM_805852.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510823.60) partial mRNA Length = 2049 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 1839 ggacgaagaggaggaggacg 1858
>ref|XM_537394.2| PREDICTED: Canis familiaris similar to adenylate cyclase 4 (LOC480271), mRNA Length = 3299 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 agaagcggacgaagaggaggagga 191 |||||| ||||||||||||||||| Sbjct: 1894 agaagcagacgaagaggaggagga 1871
>gb|AC113189.11| Homo sapiens chromosome 17, clone RP11-104H15, complete sequence Length = 184349 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 113151 ggacgaagaggaggaggacg 113132
>gb|AY302699.1| Homo sapiens KAISO-like zinc finger protein 1 mRNA, complete cds Length = 5801 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 2080 ggacgaagaggaggaggacg 2099
>ref|NM_020899.2| Homo sapiens zinc finger and BTB domain containing 4 (ZBTB4), mRNA Length = 5888 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 2189 ggacgaagaggaggaggacg 2208
>dbj|AK122971.1| Homo sapiens cDNA FLJ16715 fis, clone UTERU3000298, weakly similar to ZINC FINGER PROTEIN 151 Length = 5009 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 2064 ggacgaagaggaggaggacg 2083
>dbj|AK122826.1| Homo sapiens cDNA FLJ16429 fis, clone BRACE3008238 Length = 4437 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 1492 ggacgaagaggaggaggacg 1511
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 29304 ggacgaagaggaggaggacg 29323
>ref|XM_683538.1| PREDICTED: Danio rerio similar to zinc finger protein 567 (LOC560148), mRNA Length = 1697 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 168 agaagcggacgaagaggaggagga 191 ||||||||| |||||||||||||| Sbjct: 542 agaagcggatgaagaggaggagga 565
>gb|AY757327.1| Oreochromis niloticus isolate B6a Hox protein gene, partial cds Length = 225 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 183 ggacgaagaggaggaggacg 164
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 16906152 ggacgaagaggaggaggacg 16906171
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 aagcggacgaagaggaggag 189 |||||||||||||||||||| Sbjct: 694905 aagcggacgaagaggaggag 694924
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gcggacgaagaggaggagga 191 |||||||||||||||||||| Sbjct: 8320038 gcggacgaagaggaggagga 8320019
>gb|AC026815.8|AC026815 Oryza sativa chromosome 10 BAC OSJNBa0079L16 genomic sequence, complete sequence Length = 147452 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 90604 ggacgaagaggaggaggacg 90623
>gb|AF256078.1|AF256078 Drosophila simulans strain sim8 cut protein (ct) gene, partial cds Length = 1090 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 599 ggacgaagaggaggaggacg 618
>gb|AF256077.1|AF256077 Drosophila simulans strain sim7 cut protein (ct) gene, partial cds Length = 1090 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 599 ggacgaagaggaggaggacg 618
>gb|AF256076.1|AF256076 Drosophila simulans strain sim5 cut protein (ct) gene, partial cds Length = 1090 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 599 ggacgaagaggaggaggacg 618
>gb|AF256075.1|AF256075 Drosophila simulans strain sim4 cut protein (ct) gene, partial cds Length = 1090 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 599 ggacgaagaggaggaggacg 618
>gb|AF256074.1|AF256074 Drosophila simulans strain sim3 cut protein (ct) gene, partial cds Length = 1090 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 599 ggacgaagaggaggaggacg 618
>gb|AF256073.1|AF256073 Drosophila simulans strain sim2 cut protein (ct) gene, partial cds Length = 1090 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 599 ggacgaagaggaggaggacg 618
>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0090H18 Length = 174842 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gcggacgaagaggaggagga 191 |||||||||||||||||||| Sbjct: 96709 gcggacgaagaggaggagga 96690
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 gaagcggacgaagaggagga 188 |||||||||||||||||||| Sbjct: 742535 gaagcggacgaagaggagga 742516
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 16915192 ggacgaagaggaggaggacg 16915211
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gacgaagaggaggaggacgg 194 |||||||||||||||||||| Sbjct: 1752633 gacgaagaggaggaggacgg 1752614
>emb|AL663081.10| Mouse DNA sequence from clone RP23-138F13 on chromosome X, complete sequence Length = 206915 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 aagaagcggacgaagaggaggagg 190 |||||| ||||||||||||||||| Sbjct: 120935 aagaagaggacgaagaggaggagg 120912
>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0041A22, complete sequence Length = 117919 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 aagcggacgaagaggaggag 189 |||||||||||||||||||| Sbjct: 40104 aagcggacgaagaggaggag 40123
>dbj|AB040971.2| Homo sapiens mRNA for KIAA1538 protein, partial cds Length = 5851 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggacgaagaggaggaggacg 193 |||||||||||||||||||| Sbjct: 2164 ggacgaagaggaggaggacg 2183 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,187,748 Number of Sequences: 3902068 Number of extensions: 2187748 Number of successful extensions: 86838 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86345 Number of HSP's gapped (non-prelim): 492 length of query: 247 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 225 effective length of database: 17,147,199,772 effective search space: 3858119948700 effective search space used: 3858119948700 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
