ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast57g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete ... 46 0.060
2gb|AE012280.1| Xanthomonas campestris pv. campestris str. ATCC 3... 44 0.24
3gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 44 0.24
4gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 3.7
5gb|AY109276.1| Zea mays PCO138516 mRNA sequence 40 3.7

>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 259   gcgcagggcgttggggctgaagc 281
             |||||||||||||||||||||||
Sbjct: 20456 gcgcagggcgttggggctgaagc 20478



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>gb|AE012280.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 188
            of 460 of the complete genome
          Length = 10801

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 246  cggtgtcgatggcgcgcagggc 267
            ||||||||||||||||||||||
Sbjct: 9466 cggtgtcgatggcgcgcagggc 9487



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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 246     cggtgtcgatggcgcgcagggc 267
               ||||||||||||||||||||||
Sbjct: 2961888 cggtgtcgatggcgcgcagggc 2961867



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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    acacgcacacacgcgagcag 143
              ||||||||||||||||||||
Sbjct: 469966 acacgcacacacgcgagcag 469947



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>gb|AY109276.1| Zea mays PCO138516 mRNA sequence
          Length = 697

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 232 gccggcctagacgacggtgt 251
           ||||||||||||||||||||
Sbjct: 249 gccggcctagacgacggtgt 230


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,352,627
Number of Sequences: 3902068
Number of extensions: 2352627
Number of successful extensions: 43794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43717
Number of HSP's gapped (non-prelim): 77
length of query: 284
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 262
effective length of database: 17,147,199,772
effective search space: 4492566340264
effective search space used: 4492566340264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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