Clone Information

BLAST Search Result

Clone Name	rbast57e07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PRP28_ASPFU (Q4WPE9) Pre-mRNA splicing ATP-dependent RNA helicas...	32	0.36
2	DYN3_RAT (Q08877) Dynamin-3 (EC 3.6.5.5) (Dynamin, testicular) (...	31	0.81
3	UBE4B_MOUSE (Q9ES00) Ubiquitin conjugation factor E4 B (Ubiquiti...	31	0.81
4	UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquiti...	31	0.81
5	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	30	1.1
6	VRP1_YEAST (P37370) Verprolin	30	1.4
7	RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology doma...	30	1.4
8	SOS2_MOUSE (Q02384) Son of sevenless homolog 2 (SOS-2) (mSOS-2) ...	30	1.8
9	AUTS2_HUMAN (Q8WXX7) Autism susceptibility gene 2 protein	30	1.8
10	VP61_NPVAC (Q03209) 61 kDa protein	30	1.8
11	RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41	30	1.8
12	UMP1_ARATH (Q9LKA5) Unknown mitochondrial protein At3g15000	29	2.3
13	STK11_HUMAN (Q15831) Serine/threonine-protein kinase 11 (EC 2.7....	29	2.3
14	LRP2_HHV1F (P17589) Latency-related protein 2	29	2.3
15	SURF6_MOUSE (P70279) Surfeit locus protein 6	29	2.3
16	CANB_DROME (Q9VT65) Calpain B (EC 3.4.22.-) (Calcium-activated n...	29	2.3
17	EXTN_DAUCA (P06599) Extensin precursor	29	2.3
18	CPXQ_SACER (P48635) Cytochrome P450 113A1 (Erythromycin B/D C-12...	29	2.3
19	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	28	4.0
20	STD1_YEAST (Q02794) Protein STD1 (Glucose repression modulator M...	28	4.0
21	NOG1_MOUSE (Q99ME9) Nucleolar GTP-binding protein 1 (Chronic ren...	28	4.0
22	HMEN_ANOGA (O02491) Segmentation polarity homeobox protein engra...	28	4.0
23	NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleopor...	28	4.0
24	AREA_PENRO (O13508) Nitrogen regulatory protein areA (Nitrogen r...	28	4.0
25	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	28	4.0
26	LRFN3_MOUSE (Q8BLY3) Leucine-rich repeat and fibronectin type-II...	28	4.0
27	UBIE_CHLCV (Q81ZV1) Menaquinone biosynthesis methyltransferase u...	28	5.2
28	TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Ta...	28	5.2
29	MEF2B_HUMAN (Q02080) Myocyte-specific enhancer factor 2B (Serum ...	28	5.2
30	AKP8L_HUMAN (Q9ULX6) A-kinase anchor protein 8-like (AKAP8-like ...	28	5.2
31	YN8N_YEAST (P53735) Hypothetical 67.5 kDa protein in DBP6-COQ2 i...	28	6.8
32	LRP1_HHV1F (P17588) Latency-related protein 1	28	6.8
33	3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)	28	6.8
34	EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)	28	6.8
35	DNAK_THET8 (Q56235) Chaperone protein dnaK (Heat shock protein 7...	28	6.8
36	DNAK_THET2 (Q72IK5) Chaperone protein dnaK (Heat shock protein 7...	28	6.8
37	TRA1_MAIZE (P08770) Putative AC transposase (ORFA)	28	6.8
38	TNFL6_MACNE (P63306) Tumor necrosis factor ligand superfamily me...	28	6.8
39	TNFL6_MACMU (P63307) Tumor necrosis factor ligand superfamily me...	28	6.8
40	TNFL6_MACFA (P63308) Tumor necrosis factor ligand superfamily me...	28	6.8
41	AREA_PENCH (Q01582) Nitrogen regulatory protein areA (Nitrogen r...	28	6.8
42	TAF4_DROME (P47825) Transcription initiation factor TFIID subuni...	28	6.8
43	PAX1_MOUSE (P09084) Paired box protein Pax-1	28	6.8
44	TRAC9_MAIZE (P03010) Putative AC9 transposase	28	6.8
45	POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)	28	6.8
46	Y598_TREPA (O83607) Hypothetical protein TP0598	27	8.9
47	TEGU_EBV (P03186) Large tegument protein	27	8.9
48	EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline...	27	8.9
49	SOS1_HUMAN (Q07889) Son of sevenless homolog 1 (SOS-1)	27	8.9
50	JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone dem...	27	8.9
51	STK11_XENLA (Q91604) Serine/threonine-protein kinase 11 (EC 2.7....	27	8.9
52	Y1023_VIBCH (Q9KT82) Hypothetical UPF0052 protein VC1023	27	8.9
53	RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote...	27	8.9
54	CJ047_HUMAN (Q86WR7) Protein C10orf47	27	8.9

>PRP28_ASPFU (Q4WPE9) Pre-mRNA splicing ATP-dependent RNA helicase prp28 (EC|
           3.6.1.-)
          Length = 796

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 219 RAPVPFVPSPDSAA----PPNHVVALPFPSFLHTHSPPERKKKATYVHRTLPPNATTNLE 386
           R P P  P P+ +A    PP+  V  P P       PPE+KKK  +  +  P     ++E
Sbjct: 24  RPPTPPPPPPEDSAAPPPPPDTSVPPPPPEDAPPAPPPEKKKKVGWGAKR-PAATPLSVE 82

Query: 387 EFVR 398
           E VR
Sbjct: 83  ELVR 86

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>DYN3_RAT (Q08877) Dynamin-3 (EC 3.6.5.5) (Dynamin, testicular) (T-dynamin)|
          Length = 848

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
 Frame = +3

Query: 159 SPPASVVSNQNLTRR----KKRHARAPVPFVPSPD--SAAPPNHVVALPFPSFLHTH--- 311
           SPP S  + + LT      +   +R P P +PSP   S APP      P P F ++    
Sbjct: 759 SPPPSPTTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDSY 818

Query: 312 -SPPERKKKATYVHRTLP 362
            +PP+   + T    ++P
Sbjct: 819 GAPPQVPSRPTRAPPSVP 836

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>UBE4B_MOUSE (Q9ES00) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion|
           degradation protein 2) (Ufd2a)
          Length = 1173

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 220 EPRSRSSPHLTAPLHQIMSLPFPFLPSFTRTPHQKEK 330
           +PRS   P    P     +LP+ F+    RT HQ E+
Sbjct: 349 QPRSLQQPSFLVPYMLCRNLPYGFIQELVRTTHQDEE 385

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>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion|
           degradation protein 2) (Homozygously deleted in
           neuroblastoma 1)
          Length = 1302

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 220 EPRSRSSPHLTAPLHQIMSLPFPFLPSFTRTPHQKEK 330
           +PRS   P    P     +LP+ F+    RT HQ E+
Sbjct: 478 QPRSLQQPSFLVPYMLCRNLPYGFIQELVRTTHQDEE 514

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 23/74 (31%), Positives = 29/74 (39%)
 Frame = +3

Query: 144 RRRDVSPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAPPNHVVALPFPSFLHTHSPPE 323
           RRR  SPP +            R  R+P P  P P    PP    +   P    T SPP 
Sbjct: 558 RRRSPSPPPA------------RRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRTPSPPP 605

Query: 324 RKKKATYVHRTLPP 365
           R++  +   R  PP
Sbjct: 606 RRRSPS-PRRYSPP 618



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
 Frame = +3

Query: 120 PRSLPKQCRRRDVSPPASVVSNQNLTRRKKRHARAPVP-----FVPSPD----SAAPP-- 266
           P   P   RRR  +PP    +     RR+    R   P     + PSP     +A+PP  
Sbjct: 580 PPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPP 639

Query: 267 --NHVVALPFPSFLHTHSPPERKKKATYVHRTLP 362
                   P P    +HSPP +++  T   R  P
Sbjct: 640 PKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSP 673

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>VRP1_YEAST (P37370) Verprolin|
          Length = 817

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +3

Query: 144 RRRDVSPPASVVSNQNLTRRKKRHARAPVPFV--PSPDSAAPPNHVVALPFPSFLHTHSP 317
           RR +      V S +  T   K  ++ P+P    P P S APP    A P PS  +  S 
Sbjct: 282 RRSERGAVEGVSSTKIQTENHKSPSQPPLPSSAPPIPTSHAPPLPPTAPPPPSLPNVTSA 341

Query: 318 PERKKKATYVHRTLPP 365
           P   KKAT      PP
Sbjct: 342 P---KKATSAPAPPPP 354

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>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing|
            protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1
            ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral
            sclerosis 2 chromosomal region candidate 9 gene protein)
          Length = 1302

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 15/107 (14%)
 Frame = +3

Query: 102  MVQIKNPRSLPKQCRRRDVSPPASVVSNQNLTRRKKRHARAPVPFVPSP-DSAAPPNHVV 278
            M Q+K     P   +     PP  +   Q++T+        P P +P+P    APP  +V
Sbjct: 777  MAQLKPAPCAPSLPQFSAPPPPLKIHQVQHITQVAPPTPPPPPP-IPAPLPPQAPPKPLV 835

Query: 279  ALPFPSFLHTHSP--------------PERKKKATYVHRTLPPNATT 377
             +P P+   T +P              P  KK+  +    +PP+  T
Sbjct: 836  TIPAPTSTKTVAPVVTQAAPPTPTPPVPPAKKQPAFPASYIPPSPPT 882

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>SOS2_MOUSE (Q02384) Son of sevenless homolog 2 (SOS-2) (mSOS-2) (Fragment)|
          Length = 1297

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
 Frame = +3

Query: 219  RAPVPFVPSPDSAAPPNHVVALPF----PSFLHTHSPPE 323
            R P+P  P P    PP H +  PF    P   H H  P+
Sbjct: 1174 RDPLPDTPPPVPLRPPEHFINCPFNLQPPPLGHPHRDPD 1212

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>AUTS2_HUMAN (Q8WXX7) Autism susceptibility gene 2 protein|
          Length = 1259

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 150 RDVSPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAPPNHVVALPFPSFLHTHSP 317
           + +S P S  ++ +L+      +R+  P    P      +H  A PFP  L  HSP
Sbjct: 385 QSLSQPLSAYNSSSLSLNSLSSSRSSTPAKTQPAPPHISHHPSASPFPLSLPNHSP 440

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>VP61_NPVAC (Q03209) 61 kDa protein|
          Length = 543

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
 Frame = +3

Query: 84  NYNHHHMVQIKNPRSLPKQCRRRDVSPPASVVSNQNLTRRKKRHAR----------APVP 233
           NYN    +++  P++LP+  RR  V  PA+      + R + +  +          +PVP
Sbjct: 138 NYN----IELPPPQALPRS-RRPSVVQPAAPAPVPTIVREQTKPEQIIPAAPPPPPSPVP 192

Query: 234 FVPSPDSAAPPNHVVALPFP 293
            +P+P    PP+     P P
Sbjct: 193 NIPAPPPPPPPSMSELPPAP 212

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>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41|
          Length = 356

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +3

Query: 144 RRRDVSPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAPPNHVVALPFPSFLHTHSPPE 323
           R R  SP    V N++  R+ +  +R+P P+    +S +PP      P+     + SPP 
Sbjct: 249 RERVASPENGAVRNRS-PRKGRGESRSPPPYEKRRESRSPP------PYEKRRESRSPPP 301

Query: 324 RKKK 335
            +K+
Sbjct: 302 YEKR 305

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>UMP1_ARATH (Q9LKA5) Unknown mitochondrial protein At3g15000|
          Length = 395

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +3

Query: 96  HHMVQIKNPRSLPKQCRRRDVSPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAPPNHV 275
           +H   I+N     ++ RR D   P +   ++N  RR++  A  P P  P      PP H+
Sbjct: 200 YHEEWIRNNARANERNRRND--RPRNNDRSRNFERRRENMAGGPPPQRPPMGGPPPPPHI 257

Query: 276 -VALPFPSFLHTHSPP 320
             + P P  +   +PP
Sbjct: 258 GGSAPPPPHMGGSAPP 273

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>STK11_HUMAN (Q15831) Serine/threonine-protein kinase 11 (EC 2.7.11.1)|
           (Serine/threonine-protein kinase LKB1) (NY-REN-19
           antigen)
          Length = 433

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 198 RRKKRHARAPVPFVPSPDSAAPPNHVVALPFPSFLH 305
           R+K   A APVP  PSPD+      +  +P+   LH
Sbjct: 310 RKKHPPAEAPVPIPPSPDTKDRWRSMTVVPYLEDLH 345

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>LRP2_HHV1F (P17589) Latency-related protein 2|
          Length = 107

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
 Frame = +3

Query: 213 HARAPVPFVPSPDSAAPPNHVVALP---FPSFLHTHSPP----ERKKKATYVHRTLP 362
           H+ AP P   +P  A P +H   LP    P+  H+H+PP     R+ K T V+   P
Sbjct: 15  HSHAP-PLPRTPTPAHPHSHAPPLPRTPTPTHPHSHAPPRSIQHRQGKDTKVNLYFP 70

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>SURF6_MOUSE (P70279) Surfeit locus protein 6|
          Length = 355

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +2

Query: 164 AGLRGEQSKLDEKEKKTCTSPGPVRPLT*QRRSTKSCRCPSLSFLPSHALPTRKKKKSNV 343
           A L  + + L +  KK C  PGP R     +RST   R        +   P +K+KK+  
Sbjct: 2   ASLLAKDTYLQDLAKKICAQPGPER-----QRSTWGVRTKGSE---AAGAPKKKRKKTQK 53

Query: 344 RTP 352
           ++P
Sbjct: 54  KSP 56

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>CANB_DROME (Q9VT65) Calpain B (EC 3.4.22.-) (Calcium-activated neutral|
           proteinase B) (CANP B) [Contains: Calpain B catalytic
           subunit 1; Calpain B catalytic subunit 2]
          Length = 925

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 225 PVPFVPSPDSAAPPNHV--VALPFPSFLHTHSPPE 323
           P+P+ P P S AP +++   ALP+P    T  PPE
Sbjct: 167 PMPYAPMPTSPAPQHNIGFPALPYP----TAPPPE 197

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>EXTN_DAUCA (P06599) Extensin precursor|
          Length = 306

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 13/104 (12%)
 Frame = +3

Query: 93  HHHMVQIKNPRSLPKQCRRRDVSPPASVVSNQNLTRRKKRHA-------RAPVPFVPSPD 251
           HH+  + K+P       + +   PP  V   ++    K   A       ++P P  P   
Sbjct: 175 HHYKYKYKSPPPPTPVYKYKSPPPPTPVYKYKSPPPPKHSPAPVHHYKYKSPPPPTPVYK 234

Query: 252 SAAPPNHVVALPFPSFLH------THSPPERKKKATYVHRTLPP 365
           S  PP H    P P + +       HSPP       Y +++ PP
Sbjct: 235 SPPPPEHSPPPPTPVYKYKSPPPPMHSPP--PPTPVYKYKSPPP 276

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>CPXQ_SACER (P48635) Cytochrome P450 113A1 (Erythromycin B/D C-12 hydroxylase)|
          Length = 397

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = +3

Query: 210 RHARAPVPFVPSPDSAAPPNHVV--ALPFPSFLHTHSPPERKKKATYVHRTLPPNATTNL 383
           RHA        +   ++ P  V+  A P P  +H   PPE +     V     P   ++L
Sbjct: 41  RHADVQTVLRDTATFSSDPTRVIEGASPTPGMIHEIDPPEHRALRKVVSSAFTPRTISDL 100

Query: 384 EEFVR 398
           E  +R
Sbjct: 101 EPRIR 105

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
 Frame = +3

Query: 114 KNPRSLPKQCRRRDVSPPASVVSNQNLTRRKKRHARAPVP-----FVPSPD----SAAPP 266
           ++P   P   RRR  +PP    +     RR+    R   P     + PSP     +A+PP
Sbjct: 573 RSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPP 632

Query: 267 ----NHVVALPFPSFLHTHSPPERKKKATYVHRTLP 362
                     P P    +HSPP +++ +    R  P
Sbjct: 633 PPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSP 668

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>STD1_YEAST (Q02794) Protein STD1 (Glucose repression modulator MSN3)|
           (Suppressor of fluoride sensitivity 3)
          Length = 444

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 156 VSPPASVVSNQNLTRRK-KRHARAPVPFVPSPDSAAPPNHVVALPFPSFLHTHSPPERKK 332
           VSPP +   NQ L +RK KRH   P    P+ D+    N V ++ F S L    P   ++
Sbjct: 3   VSPPPATARNQVLGKRKSKRHDENPKNVQPNADTEM-TNSVPSIGFNSNL----PHNNQE 57

Query: 333 KATYVHRTLPPNA 371
             T  H  L  N+
Sbjct: 58  INTPNHYNLSSNS 70

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>NOG1_MOUSE (Q99ME9) Nucleolar GTP-binding protein 1 (Chronic renal failure|
           gene protein) (GTP-binding protein NGB)
          Length = 633

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 90  NHHHMVQIKNPRSLPKQCRRRDVSPPASVVSNQNLTR 200
           N H+ VQ +  RS+ ++ +R +  PP+S   +++ +R
Sbjct: 535 NAHYAVQARRSRSVTRKRKREESVPPSSTARSRSCSR 571

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>HMEN_ANOGA (O02491) Segmentation polarity homeobox protein engrailed|
          Length = 596

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
 Frame = +3

Query: 90  NHHHMVQIKNPRSLPKQCRRRDVSPPASV---VSN------QNLTRRKKRHARAPVPFVP 242
           +HH +    + +  P+Q      SPPAS+   ++N         T  +++      P + 
Sbjct: 99  HHHQLPHHPHHQHHPQQQPSPQTSPPASISFSITNILSDRFGKATAEQQQQPHPQPPAIR 158

Query: 243 SPDSAAPPNHVVALPFPS-FLH-THSP 317
            P S  P +  V LP+P   LH  H P
Sbjct: 159 EPISPGPIHPAVLLPYPQHVLHPAHHP 185

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>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein) (Nucleoporin Nup84)
          Length = 742

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +3

Query: 264 PNHVVALPFPSFLHTHSPPERKKKATYVHRTLPP 365
           PNHVV L     L   SP E  K AT    + PP
Sbjct: 19  PNHVVFLRLREGLKNQSPAEADKPATSTSPSCPP 52

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>AREA_PENRO (O13508) Nitrogen regulatory protein areA (Nitrogen regulator nmc)|
          Length = 860

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
 Frame = +3

Query: 162 PPASVVSN----QNLTRRKKRHARAPVPFVP----SPDSAAPPNHVVALPFPSFLHTHSP 317
           PPA V       Q   RR++R  +AP    P    SP SAAPP+    LP    +   +P
Sbjct: 776 PPAGVAQARAGVQVAPRRQRRLEKAPTGSDPDAKDSPKSAAPPSRSKVLPLAPAM---AP 832

Query: 318 PERKKKATY 344
           P     A +
Sbjct: 833 PAAANPANH 841

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/68 (27%), Positives = 26/68 (38%)
 Frame = +3

Query: 123 RSLPKQCRRRDVSPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAPPNHVVALPFPSFL 302
           RS     + R  S P+         +  KRH+ +P P  P   S+ PP    A   P   
Sbjct: 652 RSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRR 711

Query: 303 HTHSPPER 326
            + SP  R
Sbjct: 712 QSPSPSTR 719



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
 Frame = +3

Query: 114 KNPRSLPKQCRRRDVSPPASVVSNQNLTRRKKRHARAPVP-----FVPSPD----SAAPP 266
           ++P   P   RRR  +PP    +     RR+    R   P     + PSP     +A+PP
Sbjct: 559 RSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPP 618

Query: 267 ----NHVVALPFPSFLHTHSPPERKKKATYVHRTLP 362
                     P P    +HSPP +++ +    R  P
Sbjct: 619 PPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSP 654

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>LRFN3_MOUSE (Q8BLY3) Leucine-rich repeat and fibronectin type-III|
           domain-containing protein 3 precursor
          Length = 626

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 144 RRRDVSPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAPPNH-VVALPFPSFLHTHSP 317
           + +  +P +SV S  N        A  PVP  P+P+ AAP  H VV L    +  +H P
Sbjct: 572 KAKATAPVSSVCSQTN-------GALGPVPSAPAPEPAAPRAHTVVQLDCEPWGPSHEP 623

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>UBIE_CHLCV (Q81ZV1) Menaquinone biosynthesis methyltransferase ubiE (EC|
           2.1.1.-)
          Length = 230

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
 Frame = +3

Query: 180 SNQNLTRRKKRHARAPVPFVPSPDSAAPPNHVVALPFPSFLHT--------HSPPERKKK 335
           S+  L   K+R+ +AP  F+           +  LP     HT         + P+RK  
Sbjct: 79  SSNMLAIAKQRYPKAPFTFIEGD--------IAQLPIDQESHTLAAISYGLRNLPDRKNA 130

Query: 336 ATYVHRTLPPNATTNLEE 389
              +HR L PN    + E
Sbjct: 131 LNEIHRILKPNGCLGILE 148

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>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2365

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +1

Query: 232  RSSPHLTAPLHQIMSLPFPFLPSFTRTPHQKEKKKQRTYTVP 357
            R +P  ++P       PFPFLP  +   HQ +  +     +P
Sbjct: 1068 RDAPRASSPPRHTQFDPFPFLPDTSDAEHQCQSPQHEPLQLP 1109

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>MEF2B_HUMAN (Q02080) Myocyte-specific enhancer factor 2B (Serum response|
           factor-like protein 2) (XMEF2) (RSRFR2)
          Length = 365

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 225 PVPFVPSPDSAAPPNHVVALPFPSFLHTHSPP 320
           P PF P+   A PP  V  L  PS L + +PP
Sbjct: 167 PSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPP 198

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>AKP8L_HUMAN (Q9ULX6) A-kinase anchor protein 8-like (AKAP8-like protein)|
           (Neighbor of A-kinase anchoring protein 95) (Neighbor of
           AKAP95) (Homologous to AKAP95 protein) (HA95) (Helicase
           A-binding protein 95) (HAP95)
          Length = 646

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/46 (21%), Positives = 28/46 (60%)
 Frame = +3

Query: 114 KNPRSLPKQCRRRDVSPPASVVSNQNLTRRKKRHARAPVPFVPSPD 251
           +N R + +Q ++  +    S+++N+ ++++ +R+ +   PF  SP+
Sbjct: 509 RNRRLMMEQSKKSSLMVARSILNNKLISKKLERYLKGENPFTDSPE 554

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>YN8N_YEAST (P53735) Hypothetical 67.5 kDa protein in DBP6-COQ2 intergenic|
           region
          Length = 605

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 159 SPPASVVSNQNLTR-RKKRHARAPVPFVPSPDSAAPPNHVVALPFPSF 299
           +PP+S  S  +  +  + +H+   + F   P+   P N   +LP P F
Sbjct: 167 TPPSSAASRTSFRKGHRYKHSSVSMNFFQEPEVKIPLNIAKSLPIPDF 214

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>LRP1_HHV1F (P17588) Latency-related protein 1|
          Length = 340

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +3

Query: 213 HARAP-VPFVPSPD---SAAPPNHVVALPFPSFLHTHSPP 320
           H+ AP +P  P+P    S APP  +   P P+  H+H+PP
Sbjct: 33  HSHAPPLPRTPTPSHPHSRAPP--LPRAPTPTHPHSHAPP 70

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>3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)|
          Length = 701

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = +3

Query: 120 PRSLPKQC-----RRRDVSPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAP 263
           P++LP++      R   V PP      Q   R+ +R   +P P  P P S +P
Sbjct: 602 PQALPRRLVGSSLRAPTVPPPLPPTPPQPARRQSRRSPASPSPASPGPASPSP 654

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>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)|
          Length = 283

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +3

Query: 207 KRHARAPVPFVPSPDSAAPPNHVVALPFPSFLHTHSPPERKKKATYVHRTLPPNATT 377
           K H   P  + PSP    PP    A P P+   T++P  + K   Y     PP A+T
Sbjct: 65  KEHKPTPPTYTPSPKPTPPP----ATPKPT-PPTYTPSPKPKSPVY---PPPPKAST 113

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>DNAK_THET8 (Q56235) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 615

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 184 IKT*REGKKDMHEPRSRSSPHLTAPLHQIMSLPFPFLPSFTRTPHQKEKKKQR 342
           +K  R+  + + E   ++   L++ L   +SLPF  L   ++TP   EKK  R
Sbjct: 244 LKADRQALQRLIEAAEKAKIELSSTLETTISLPFIALDPASKTPLHLEKKLTR 296

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>DNAK_THET2 (Q72IK5) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 615

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 184 IKT*REGKKDMHEPRSRSSPHLTAPLHQIMSLPFPFLPSFTRTPHQKEKKKQR 342
           +K  R+  + + E   ++   L++ L   +SLPF  L   ++TP   EKK  R
Sbjct: 244 LKADRQALQRLIEAAEKAKIELSSTLETTISLPFIALDPASKTPLHLEKKLTR 296

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>TRA1_MAIZE (P08770) Putative AC transposase (ORFA)|
          Length = 806

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 8   VSSLIHFFPCKTIIVGATYLQDLYLKL*SSSYGTDKE-SAQFTKAM 142
           V SL   FP K+ +    Y+ DLYL+     YG  K+  ++F+  M
Sbjct: 254 VKSLRPHFPIKSRVTARKYIMDLYLEEKEKLYGKLKDVQSRFSTTM 299

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>TNFL6_MACNE (P63306) Tumor necrosis factor ligand superfamily member 6 (Fas|
           antigen ligand) (Fas ligand) (CD178 antigen) (CD95L
           protein) [Contains: Tumor necrosis factor ligand
           superfamily member 6, membrane form; Tumor necrosis
           factor ligand superfamily
          Length = 280

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 159 SPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAPPNHVVALPFP 293
           +PP +V+       R+    R P P  P P    PP+ +  LP P
Sbjct: 24  APPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPSPLPPLPLP 68

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>TNFL6_MACMU (P63307) Tumor necrosis factor ligand superfamily member 6 (Fas|
           antigen ligand) (Fas ligand) (CD178 antigen) (CD95L
           protein) [Contains: Tumor necrosis factor ligand
           superfamily member 6, membrane form; Tumor necrosis
           factor ligand superfamily
          Length = 280

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 159 SPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAPPNHVVALPFP 293
           +PP +V+       R+    R P P  P P    PP+ +  LP P
Sbjct: 24  APPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPSPLPPLPLP 68

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>TNFL6_MACFA (P63308) Tumor necrosis factor ligand superfamily member 6 (Fas|
           antigen ligand) (Fas ligand) (CD178 antigen) (CD95L
           protein) [Contains: Tumor necrosis factor ligand
           superfamily member 6, membrane form; Tumor necrosis
           factor ligand superfamily
          Length = 280

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 159 SPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAPPNHVVALPFP 293
           +PP +V+       R+    R P P  P P    PP+ +  LP P
Sbjct: 24  APPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPSPLPPLPLP 68

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>AREA_PENCH (Q01582) Nitrogen regulatory protein areA (Nitrogen regulator nre)|
          Length = 725

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
 Frame = +3

Query: 162 PPASVVSN----QNLTRRKKRHARAPVPFVP----SPDSAAPPNHVVALPFPSFLHTHSP 317
           PPA V       Q   RR++R  +AP    P    SP SAAPP+    +P    +   +P
Sbjct: 641 PPAGVAQARAGVQVAPRRQRRLEKAPAGSEPDADDSPKSAAPPSRSKVVPLAPAM---AP 697

Query: 318 PERKKKATY 344
           P     A +
Sbjct: 698 PAAANPANH 706

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>TAF4_DROME (P47825) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 110 kDa subunit)
           (p110) (TAFII-110) (110 kDa TBP-associated factor)
          Length = 921

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 24/115 (20%)
 Frame = +3

Query: 99  HMVQIKNPRSLPKQCR-----RRDVSPPASVVSNQNLTRRK--KRHARAPVPFVPSPDSA 257
           ++VQI+ P+    Q       R    PP SV +   LT  K  +   +A  P +  P  A
Sbjct: 472 NIVQIRGPQHAQLQRTGSVQIRATTRPPNSVPTANKLTAVKVGQTQIKAITPSLHPPSLA 531

Query: 258 A-----PPNHVVA------------LPFPSFLHTHSPPERKKKATYVHRTLPPNA 371
           A     PP   ++            LP PS    H PPE  +    +  +L  N+
Sbjct: 532 AISGGPPPTPTLSVLSTLNSASTTTLPIPSLPTVHLPPEALRAREQMQNSLNHNS 586

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>PAX1_MOUSE (P09084) Paired box protein Pax-1|
          Length = 361

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +3

Query: 171 SVVSNQNLTRRKKRHARAPVPFV----PSPDSAAPPNHVVALPFPS 296
           SV S   + R K      P P+     P P  A P NH+   P+PS
Sbjct: 119 SVSSISRILRNKIGSLAQPGPYEASKQPPPQPALPYNHIYQYPYPS 164

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>TRAC9_MAIZE (P03010) Putative AC9 transposase|
          Length = 839

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 8   VSSLIHFFPCKTIIVGATYLQDLYLKL*SSSYGTDKE-SAQFTKAM 142
           V SL   FP K+ +    Y+ DLYL+     YG  K+  ++F+  M
Sbjct: 200 VKSLRPHFPIKSRVTARKYIMDLYLEEKEKLYGKLKDVQSRFSTTM 245

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>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1776

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 213 HARAPVPFVPSPDSAAPPNHVVALPFPSFLHTHSPPERKKKATYVHRTLPP 365
           H ++P PF+P   +   P+  +ALP P F      P ++  +      +PP
Sbjct: 525 HVQSPSPFLPLSLTPPSPSEEIALPPPIFRVPPPLPAQETPSPPAPALVPP 575

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>Y598_TREPA (O83607) Hypothetical protein TP0598|
          Length = 605

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 243 SPDSAAPPNHVVALPFPSFLHTHSPPERKKKATYVH 350
           +PDSAAP  + V  P P       P  R+K+ T VH
Sbjct: 62  APDSAAPARNSVLSPAP-------PERREKQGTAVH 90

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>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 23/85 (27%), Positives = 32/85 (37%)
 Frame = +2

Query: 107  TDKESAQFTKAMPTP*CVAAGLRGEQSKLDEKEKKTCTSPGPVRPLT*QRRSTKSCRCPS 286
            T  +  Q   A+PTP   A G R          K T       RP     R   +   PS
Sbjct: 2899 TQAQRPQDAAALPTPTIKAVGAR-------PVPKATGALAAGARP-----RGQPTAAPPS 2946

Query: 287  LSFLPSHALPTRKKKKSNVRTPYPP 361
             +  P  +LP R +++ +   P PP
Sbjct: 2947 AASPPRVSLPVRSRQQQSPAIPLPP 2971

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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
 Frame = +3

Query: 222 APVPFVPSPD--SAAPPNHVVALPFPSFLHTHSPPERKKKATYVHRTLPP 365
           +P P V  P   S  PP HV   P P        P   + A   HR  PP
Sbjct: 193 SPSPQVQPPPTYSPPPPTHVQPTPSPPSRGHQPQPPTHRHAPPTHRHAPP 242

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>SOS1_HUMAN (Q07889) Son of sevenless homolog 1 (SOS-1)|
          Length = 1333

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 31/120 (25%), Positives = 43/120 (35%), Gaps = 19/120 (15%)
 Frame = +3

Query: 63   TYKTYI*NYNHHHMVQIKNPRSLPKQCRRRDVSPPASVVSNQNL------TRRKKRHARA 224
            T K Y   Y+      I +P   P     R+      V S+  L        +K  H  A
Sbjct: 1188 TSKAYSPRYSISDRTSISDPPESPPLLPPREPVRTPDVFSSSPLHLQPPPLGKKSDHGNA 1247

Query: 225  PVPFVPSPDSAAPP---------NHVVALPFPSFLHTHS---PPERKKKATYVH-RTLPP 365
              P  PSP +  PP          H+ + P    +  HS   PP   +++T  H   LPP
Sbjct: 1248 FFPNSPSPFTPPPPQTPSPHGTRRHLPSPPLTQEVDLHSIAGPPVPPRQSTSQHIPKLPP 1307

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>JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone demethylation|
           protein 2C (EC 1.14.11.-) (Jumonji domain-containing
           protein 1C) (Thyroid receptor-interacting protein 8)
           (TRIP-8)
          Length = 2540

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = +3

Query: 165 PASVVSNQNLTRRKKRHARAPVP--FVPSPDSAAPPNHVVALPFPSFLH---THSPPERK 329
           P S VS        K H R+P P       +++   + + + P P  +    THSP   K
Sbjct: 602 PLSAVS----VMEDKLHKRSPPPETIKSKLNTSVDTHKIKSSPSPEVVKPKITHSPDSVK 657

Query: 330 KKATYVH 350
            KATYV+
Sbjct: 658 SKATYVN 664

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>STK11_XENLA (Q91604) Serine/threonine-protein kinase 11 (EC 2.7.11.1)|
           (Serine/threonine-protein kinase XEEK1) (Egg and embryo
           kinase 1)
          Length = 432

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 177 VSNQNLTRRKKRHARAPVPFVPSPDSAAPPNHVVALPFPSFLHTHSPPE 323
           +   N  R+K  H    VP  PSP++      +  +P+   LH +S  E
Sbjct: 306 IRQHNWFRKKHPHMDPIVPIPPSPETKDRWRSLTVVPYLEDLHGYSEEE 354

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>Y1023_VIBCH (Q9KT82) Hypothetical UPF0052 protein VC1023|
          Length = 296

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = -3

Query: 259 AALSGEGTNGTGARACXXXXXXXXXXLTTEAGGDTSRRRHCFG 131
           AAL   G+N TG               TT+ GG T R RHC G
Sbjct: 23  AALKVFGSNATGI------------VTTTDNGGSTGRIRHCQG 53

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>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-related protein)
          Length = 1559

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
 Frame = +3

Query: 126 SLPKQCRRRDVSPPASVVSNQNLTRRKKRHARAPVPFVPSPDSAAPPNHVVALPFPS-FL 302
           S P    +  V+P A  +  Q  T    R    P P  P     APP+   A P P   L
Sbjct: 781 SQPPNQTQSTVAPAAHTLIQQTPTLHPPR---LPSPHPPLQPMTAPPSQNSAQPHPQPSL 837

Query: 303 HTHSPP 320
           H   PP
Sbjct: 838 HGQGPP 843

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>CJ047_HUMAN (Q86WR7) Protein C10orf47|
          Length = 435

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 207 KRHARAPVPFVPSPDSAAPPNHVVALPFPSFLHTHSPPERKKKA 338
           K H +      P PD  AP   +   P PS   T  PP R+ +A
Sbjct: 137 KEHRKQDAETPPPPDPPAPETLLAPPPLPS---TPDPPRRELRA 177


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,515,659
Number of Sequences: 219361
Number of extensions: 1291286
Number of successful extensions: 4316
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 3888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4252
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result