Clone Information

BLAST Search Result

Clone Name	rbast57d11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ARNA_WIGBR (Q8D341) Bifunctional polymyxin resistance arnA prote...	44	2e-04
2	ARNA_SALCH (P0C0R6) Bifunctional polymyxin resistance arnA prote...	41	0.001
3	ARNA_SALTY (O52325) Bifunctional polymyxin resistance arnA prote...	40	0.002
4	ARNA_PSEU2 (Q4ZSZ2) Bifunctional polymyxin resistance arnA prote...	40	0.003
5	ARNA_PSEF5 (Q4KC82) Bifunctional polymyxin resistance arnA prote...	39	0.004
6	ARNA_ERWCT (Q6D2F1) Bifunctional polymyxin resistance arnA prote...	39	0.007
7	ARNA_ECOLI (P77398) Bifunctional polymyxin resistance arnA prote...	39	0.007
8	ARNA_ECOL6 (Q8FFM1) Bifunctional polymyxin resistance arnA prote...	38	0.009
9	ARNA_SALTI (Q8Z540) Bifunctional polymyxin resistance arnA prote...	38	0.012
10	ARNA_SALPA (Q5PNA6) Bifunctional polymyxin resistance arnA prote...	38	0.012
11	UXS1_XENTR (Q6DF08) UDP-glucuronic acid decarboxylase 1 (EC 4.1....	38	0.012
12	UXS1_RAT (Q5PQX0) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1....	38	0.012
13	UXS1_PONPY (Q5R885) UDP-glucuronic acid decarboxylase 1 (EC 4.1....	38	0.012
14	UXS1_MOUSE (Q91XL3) UDP-glucuronic acid decarboxylase 1 (EC 4.1....	38	0.012
15	UXS1_HUMAN (Q8NBZ7) UDP-glucuronic acid decarboxylase 1 (EC 4.1....	38	0.012
16	ARNA_PSE14 (Q48HZ1) Bifunctional polymyxin resistance arnA prote...	37	0.016
17	ARNA_PSEAE (Q9HY63) Bifunctional polymyxin resistance arnA prote...	37	0.016
18	ARNA_ECO57 (Q8XDZ3) Bifunctional polymyxin resistance arnA prote...	37	0.016
19	ARNA_SHIFL (Q83QT8) Bifunctional polymyxin resistance arnA prote...	37	0.021
20	UXS1_BRARE (Q6GMI9) UDP-glucuronic acid decarboxylase 1 (EC 4.1....	37	0.027
21	ARNA_YERPS (Q93PD8) Bifunctional polymyxin resistance arnA prote...	35	0.061
22	ARNA_YERPE (Q8ZDX8) Bifunctional polymyxin resistance arnA prote...	35	0.061
23	ARNA_PHOLL (Q7N3Q7) Bifunctional polymyxin resistance arnA prote...	35	0.079
24	GNL1_PANTR (Q7YR35) Guanine nucleotide-binding protein-like 1 (G...	31	1.1
25	GNL1_HUMAN (P36915) Guanine nucleotide-binding protein-like 1 (G...	31	1.1
26	YAGE_SCHPO (Q9UTN4) Hypothetical WD-repeat protein C12G12.14c in...	31	1.5
27	GNL1_MOUSE (P36916) Guanine nucleotide-binding protein-like 1 (G...	30	2.5
28	Y277_MYCGE (Q49409) Hypothetical protein MG277	30	3.3
29	PPME1_CRYNE (Q5KBD8) Protein phosphatase methylesterase 1 (EC 3....	29	4.3
30	SN114_YEAST (P36048) 114 kDa U5 small nuclear ribonucleoprotein ...	29	4.3
31	CLIC6_RAT (Q811Q2) Chloride intracellular channel 6	29	5.7
32	GME1_ORYSA (Q338B5) GDP-mannose 3,5-epimerase 1 (EC 5.1.3.18) (G...	29	5.7
33	SRBS1_MOUSE (Q62417) Sorbin and SH3 domain-containing protein 1 ...	28	9.7
34	ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (I...	28	9.7
35	NRDC_MOUSE (Q8BHG1) Nardilysin precursor (EC 3.4.24.61) (N-argin...	28	9.7
36	ANPRA_MOUSE (P18293) Atrial natriuretic peptide receptor A precu...	28	9.7
37	WRK44_ARATH (Q9ZUU0) WRKY transcription factor 44 (WRKY DNA-bind...	28	9.7
38	PPID_ASPOR (Q2U0E0) Peptidyl-prolyl cis-trans isomerase D (EC 5....	28	9.7
39	GME2_ORYSA (Q2R1V8) GDP-mannose 3,5-epimerase 2 (EC 5.1.3.18) (G...	28	9.7
40	FCL1_ORYSA (Q67WR2) Probable GDP-L-fucose synthase 1 (EC 1.1.1.2...	28	9.7
41	CBX8_MOUSE (Q9QXV1) Chromobox protein homolog 8 (Polycomb 3 homo...	28	9.7
42	RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subun...	28	9.7

>ARNA_WIGBR (Q8D341) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 654

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -2

Query: 423 VSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTY 286
           +S   +YGEGY D D+R P++ +  K L W PKT ++  L   + +
Sbjct: 602 LSGTNYYGEGYQDIDRRKPNIDIAKKLLNWTPKTKIRITLRKIINF 647

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>ARNA_SALCH (P0C0R6) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 660

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -2

Query: 423 VSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTY 286
           V+++ +YG+GY D   R P +    + LGW P   ++D +E TL +
Sbjct: 603 VASRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648

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>ARNA_SALTY (O52325) Bifunctional polymyxin resistance arnA protein (Polymyxin|
           resistance protein pmrI) [Includes: UDP-glucuronic acid
           decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase)
           (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose
           formyltransferase (EC 2.1
          Length = 660

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 423 VSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTY 286
           V ++ +YG+GY D   R P +    + LGW P   ++D +E TL +
Sbjct: 603 VESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648

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>ARNA_PSEU2 (Q4ZSZ2) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 664

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 426 DVSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTY 286
           +V ++ FYG+GY D   R P +    K +GW P   L + +  TL +
Sbjct: 605 EVESQSFYGKGYQDVSHRTPSIDNAKKLIGWTPGIELSETIGKTLDF 651

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>ARNA_PSEF5 (Q4KC82) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 668

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 426 DVSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTY 286
           DV +K FYG GY D + R P +    + L W P   + + +  TL +
Sbjct: 604 DVESKAFYGAGYQDVEHRKPSIDNAKRLLNWEPTVEMSETIGNTLDF 650

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>ARNA_ERWCT (Q6D2F1) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 673

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 429 IDVSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKT 274
           IDV +  +YG+GY D   R P +    + L W P   ++  +  TL Y  +T
Sbjct: 608 IDVESSSYYGKGYQDVAHRTPSIRNAKRLLEWEPTVKMEQTVAETLDYFLRT 659

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>ARNA_ECOLI (P77398) Bifunctional polymyxin resistance arnA protein (Polymyxin|
           resistance protein pmrI) [Includes: UDP-glucuronic acid
           decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase)
           (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose
           formyltransferase (EC 2.1
          Length = 660

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -2

Query: 423 VSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKT 274
           V +  +YG+GY D + R P +   ++ L W PK  +++ ++ TL +  +T
Sbjct: 603 VESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652

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>ARNA_ECOL6 (Q8FFM1) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 660

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -2

Query: 423 VSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKT 274
           V +  +YG+GY D + R P +    + L W PK  +++ ++ TL +  +T
Sbjct: 603 VESSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQETIDETLDFFLRT 652

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>ARNA_SALTI (Q8Z540) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 660

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 423 VSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTY 286
           V ++ +YG+GY D   R P +    + L W P   ++D +E TL +
Sbjct: 603 VESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRDTVEETLDF 648

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>ARNA_SALPA (Q5PNA6) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 660

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 423 VSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTY 286
           V ++ +YG+GY D   R P +    + L W P   ++D +E TL +
Sbjct: 603 VESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRDTVEETLDF 648

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>UXS1_XENTR (Q6DF08) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)|
           (UDP-glucuronate decarboxylase 1) (UXS-1)
          Length = 421

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -2

Query: 408 FYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKTYKEAVKTQ 250
           F  E  DD  +R PD+      LGW P  PL++ L  T+ Y  K  +     Q
Sbjct: 351 FLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKELEHQANNQ 403

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>UXS1_RAT (Q5PQX0) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)|
           (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1)
          Length = 420

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -2

Query: 411 EFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKTYKEAVKTQ 250
           +F  E  DD  KR PD+      LGW P  PL++ L   + Y  K  +     Q
Sbjct: 349 QFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQ 402

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>UXS1_PONPY (Q5R885) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)|
           (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1)
          Length = 420

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -2

Query: 411 EFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKTYKEAVKTQ 250
           +F  E  DD  KR PD+      LGW P  PL++ L   + Y  K  +     Q
Sbjct: 349 QFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQ 402

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>UXS1_MOUSE (Q91XL3) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)|
           (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1)
          Length = 420

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -2

Query: 411 EFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKTYKEAVKTQ 250
           +F  E  DD  KR PD+      LGW P  PL++ L   + Y  K  +     Q
Sbjct: 349 QFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQ 402

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>UXS1_HUMAN (Q8NBZ7) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)|
           (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1)
          Length = 420

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -2

Query: 411 EFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKTYKEAVKTQ 250
           +F  E  DD  KR PD+      LGW P  PL++ L   + Y  K  +     Q
Sbjct: 349 QFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQ 402

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>ARNA_PSE14 (Q48HZ1) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 663

 Score = 37.4 bits (85), Expect = 0.016
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 426 DVSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTY 286
           +V ++ FYG+GY D   R P +    + +GW P   L + +  TL +
Sbjct: 604 EVESQSFYGKGYQDVSHRKPSIDNARQLIGWTPGIELSETIGKTLDF 650

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>ARNA_PSEAE (Q9HY63) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 662

 Score = 37.4 bits (85), Expect = 0.016
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 426 DVSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLT-YQHKTYKE 265
           +V ++ FYG+GY D   R P +    + L W P   L++ +  TL  + H+  +E
Sbjct: 603 EVESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDFFLHEALRE 657

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>ARNA_ECO57 (Q8XDZ3) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 660

 Score = 37.4 bits (85), Expect = 0.016
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -2

Query: 423 VSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKT 274
           V +  +YG+GY D + R P +   +  L W PK  +++ ++ TL +  +T
Sbjct: 603 VESSSYYGKGYQDVEHRKPSIRNAHHCLDWEPKIDMQETIDETLDFFLRT 652

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>ARNA_SHIFL (Q83QT8) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 660

 Score = 37.0 bits (84), Expect = 0.021
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -2

Query: 423 VSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKT 274
           V +  +YG+GY D + R P +   ++ L W PK  +++ ++ TL +  +T
Sbjct: 603 VESSCYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652

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>UXS1_BRARE (Q6GMI9) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)|
           (UDP-glucuronate decarboxylase 1) (UXS-1)
          Length = 418

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 411 EFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKTYKEAVKTQ 250
           +F  E  DD  +R PD+      LGW P  PL++ L  T+ Y  +  +     Q
Sbjct: 347 QFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGLNKTIQYFSRELEHQANNQ 400

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>ARNA_YERPS (Q93PD8) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 667

 Score = 35.4 bits (80), Expect = 0.061
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 426 DVSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTY 286
           D+ +  +YG+GY D + R P +    + L W P+  ++  +  TL +
Sbjct: 602 DIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648

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>ARNA_YERPE (Q8ZDX8) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 667

 Score = 35.4 bits (80), Expect = 0.061
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 426 DVSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTY 286
           D+ +  +YG+GY D + R P +    + L W P+  ++  +  TL +
Sbjct: 602 DIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648

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>ARNA_PHOLL (Q7N3Q7) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 660

 Score = 35.0 bits (79), Expect = 0.079
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 423 VSAKEFYGEGYDDSDKRIPDMTLINKQLGWNPKTPLKDLLETTLTY 286
           V +  +YG+GY D + R P +    + L W P   +K  +  TL +
Sbjct: 603 VESGSYYGKGYQDVEHRKPSIKNAERLLDWKPTIDMKQTINETLDF 648

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>GNL1_PANTR (Q7YR35) Guanine nucleotide-binding protein-like 1 (GTP-binding|
           protein HSR1)
          Length = 430

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
 Frame = -1

Query: 313 GPAGDDSDLPAQDLQGSCQ-------DADVSGHGDAVKLDDDGTSASATAL 182
           GPAGD+ +   ++L  SC+       DAD  G GD    ++  TSA  ++L
Sbjct: 370 GPAGDEEEEEEEELSSSCEEEGEEDRDADEEGEGD----EETPTSAPGSSL 416

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>GNL1_HUMAN (P36915) Guanine nucleotide-binding protein-like 1 (GTP-binding|
           protein HSR1)
          Length = 430

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
 Frame = -1

Query: 313 GPAGDDSDLPAQDLQGSCQ-------DADVSGHGDAVKLDDDGTSASATAL 182
           GPAGD+ +   ++L  SC+       DAD  G GD    ++  TSA  ++L
Sbjct: 370 GPAGDEEEEEEEELSSSCEEEGEEDRDADEEGEGD----EETPTSAPGSSL 416

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>YAGE_SCHPO (Q9UTN4) Hypothetical WD-repeat protein C12G12.14c in chromosome I|
          Length = 509

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
 Frame = -1

Query: 364 HDPDQQAARVEPQDPSQGPAGDDSDLPAQDLQGSCQDADVSGHGDAVKLDD----DGTSA 197
           H+ + +     P D     A DD  L   +   S ++  ++GHG  VK  D     G  A
Sbjct: 163 HEMEVRDVAFSPNDSKFVTASDDGSLKVWNFHMSTEELKLTGHGWDVKTVDWHPSKGLLA 222

Query: 196 SATA--LLIFWKPDTDVIV 146
           S +   L+ FW P T   +
Sbjct: 223 SGSKDNLVKFWDPRTGTCI 241

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>GNL1_MOUSE (P36916) Guanine nucleotide-binding protein-like 1 (GTP-binding|
           protein MMR1)
          Length = 430

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
 Frame = -1

Query: 313 GPAGDDSDLPAQDLQGSCQ-------DADVSGHGDAVKLDDDGTSASATAL 182
           GPAGD+ +   ++L  SC+       DAD  G GD    +D  TS   + L
Sbjct: 370 GPAGDEEEEEEEELSSSCEEEGEEDRDADEEGEGD----EDTPTSDPGSCL 416

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>Y277_MYCGE (Q49409) Hypothetical protein MG277|
          Length = 970

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 301 DDSDLPAQDLQGSCQDADVSGHGDAVKLDDDGTSASATALLIFWK 167
           +  +L + D       A V G+G   K + +GTS+S    L+ WK
Sbjct: 237 NSKNLSSSDYNTGNGQASVEGNGKFFKQNANGTSSSGNKTLVLWK 281

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>PPME1_CRYNE (Q5KBD8) Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1)|
          Length = 422

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 298 DSDLPAQDLQGSCQDADVSGHGDAVKLDDDGTSASATALLIFWKPDTDVIVKPP 137
           D +L    +QG  Q   +S  G    L +D  +  A  L+ FW  +T V+V PP
Sbjct: 349 DRELMVGQMQGKFQLEVMSDVGHY--LHEDNPAGLAATLITFWHRNTRVLVLPP 400

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>SN114_YEAST (P36048) 114 kDa U5 small nuclear ribonucleoprotein component|
           (GIN10 protein)
          Length = 1008

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -2

Query: 387 DSDKRIPDMTLINKQLGWNPKTPLKDL 307
           DS KRIPDM+  N +LGW P   L +L
Sbjct: 156 DSHKRIPDMSK-NVELGWKPLRYLDNL 181

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>CLIC6_RAT (Q811Q2) Chloride intracellular channel 6|
          Length = 612

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 343 ARVEPQDPSQGPAGDDSDLPAQDLQGSCQDADVSGHGDAVKLDDDGTSASA 191
           AR EP+DP    AG++++   + L GS  ++ ++        D+  T A A
Sbjct: 142 ARREPEDPKASEAGEEAESGQEALGGSAPESQINPEVQGPVGDNMDTEAPA 192

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>GME1_ORYSA (Q338B5) GDP-mannose 3,5-epimerase 1 (EC 5.1.3.18) (GDP-Man|
           3,5-epimerase 1) (OsGME-1)
          Length = 378

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 19/42 (45%), Positives = 22/42 (52%)
 Frame = -2

Query: 375 RIPDMTLINKQLGWNPKTPLKDLLETTLTYQHKTYKEAVKTQ 250
           R  D TLI ++LGW P   LKD L  T  +  K   E  KTQ
Sbjct: 307 RNSDNTLIKEKLGWAPTMKLKDGLRFTY-FWIKEQIEKEKTQ 347

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>SRBS1_MOUSE (Q62417) Sorbin and SH3 domain-containing protein 1 (Ponsin)|
           (c-Cbl-associated protein) (CAP) (SH3 domain protein 5)
           (SH3P12)
          Length = 1290

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 352 QQAARVEPQDPSQGPAGDDSDLPAQDLQ 269
           Q   +  P D S+ PAG  +DLP  D Q
Sbjct: 865 QHPRQPPPSDSSESPAGQKADLPCHDPQ 892

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>ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (Immediate-early|
           protein IE110) (VMW110) (Alpha-0 protein)
          Length = 775

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
 Frame = -1

Query: 361 DPDQQAARVEPQD-PSQGPAGD------DSDLPAQDLQGSCQDADVSGHGDAVKLDDDGT 203
           +P   A+   P+  P + PA D      D DLP  D   S  + +V G GDA   DDD  
Sbjct: 2   EPRPGASTRRPEGRPQREPAPDVWVFPCDRDLP--DSSDSEAETEVGGRGDADHHDDDSA 59

Query: 202 S 200
           S
Sbjct: 60  S 60

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>NRDC_MOUSE (Q8BHG1) Nardilysin precursor (EC 3.4.24.61) (N-arginine dibasic|
           convertase) (NRD convertase) (NRD-C)
          Length = 1161

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -1

Query: 355 DQQAARVEPQDPSQGPAGDDSDLPAQDLQGSCQDADVSGHGDAVKLDDD 209
           D++    E ++       DD D   +D     QD D  G  D  + DDD
Sbjct: 139 DEEEEEEEEEEEEDDDDDDDDDDDDEDSGAEIQDDDEEGFDDEEEFDDD 187

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>ANPRA_MOUSE (P18293) Atrial natriuretic peptide receptor A precursor (ANP-A)|
           (ANPRA) (GC-A) (Guanylate cyclase) (EC 4.6.1.2) (NPR-A)
           (Atrial natriuretic peptide A-type receptor)
          Length = 1057

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 289 GQSRLQQVLERGLGVPP*LLVDQGHVGDPLVTVVVP 396
           G  R++  L   L +PP LL+  GH  D  V VV+P
Sbjct: 3   GSRRVRPRLRALLLLPPLLLLRSGHASDLTVAVVLP 38

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>WRK44_ARATH (Q9ZUU0) WRKY transcription factor 44 (WRKY DNA-binding protein 44)|
           (TRANSPARENT TESTA GLABRA 2)
          Length = 429

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 265 SCQDADVSGHGDAVKLDDDGTSASATALLIFWKPDTDVIVKPPSSFLSRL 116
           SC  A+V G G+ +  DDD  S +     + +KP   ++ K   S L+ +
Sbjct: 68  SCPRAEVKGIGNGMSCDDDSDSRN----YVVYKPKAKLVSKATVSALANM 113

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>PPID_ASPOR (Q2U0E0) Peptidyl-prolyl cis-trans isomerase D (EC 5.2.1.8) (PPIase|
           D) (Rotamase D)
          Length = 371

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -2

Query: 435 PVIDVS---AKEFYGEGYDDSDKRIPDMT 358
           PV DV+     E  G+ YDD+DK+ PD T
Sbjct: 161 PVKDVTIVECGELTGQDYDDADKQTPDAT 189

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>GME2_ORYSA (Q2R1V8) GDP-mannose 3,5-epimerase 2 (EC 5.1.3.18) (GDP-Man|
           3,5-epimerase 2)
          Length = 371

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 375 RIPDMTLINKQLGWNPKTPLKDLLETT 295
           R  D TLI ++LGW P   LKD L  T
Sbjct: 300 RNSDNTLIKEKLGWAPTMRLKDGLRIT 326

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>FCL1_ORYSA (Q67WR2) Probable GDP-L-fucose synthase 1 (EC 1.1.1.271)|
           (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           1)
          Length = 328

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -2

Query: 390 DDSDKRIPDMTLINKQLGWNPKTPLKD-LLETTLTY 286
           D + +++ D + I +++GW PK PLK+ L+ET   Y
Sbjct: 285 DGTPRKLMDSSKI-QEMGWKPKVPLKEGLVETYKWY 319

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>CBX8_MOUSE (Q9QXV1) Chromobox protein homolog 8 (Polycomb 3 homolog) (Pc3)|
           (MPc3)
          Length = 362

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 340 RVEPQDPSQGPAGDDSDLPAQDLQGSCQDADVSGHG 233
           R EP DPSQ P G+ S    + L+G   D   SG G
Sbjct: 177 RKEPLDPSQRPLGEPSAGLGEYLKGRKLDETSSGTG 212

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>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RNA polymerase II subunit 1)
          Length = 1752

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 20/76 (26%), Positives = 31/76 (40%)
 Frame = -1

Query: 364 HDPDQQAARVEPQDPSQGPAGDDSDLPAQDLQGSCQDADVSGHGDAVKLDDDGTSASATA 185
           H P  +  R E Q+ +  P    S    + + G  QD           L D+  + +A  
Sbjct: 496 HVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVR--KFSLRDNFLTRNAVM 553

Query: 184 LLIFWKPDTDVIVKPP 137
            ++ W PD D I+ PP
Sbjct: 554 NIMLWVPDWDGILPPP 569


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,513,079
Number of Sequences: 219361
Number of extensions: 1055624
Number of successful extensions: 3609
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 3479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3609
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result