>EFTS_DESVH (Q72DQ6) Elongation factor Ts (EF-Ts)|
          Length = 287

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -1

Query: 417 EKAEAGKLMSKIKALENCNGKMDSEIGELRMALKEKNGK 301
           EK  AG +  K KALE C G+MD  +  LR     K  K
Sbjct: 13  EKTSAGMMDCK-KALEECGGEMDKAVDWLRQKGLSKAAK 50

>RAD50_ARCFU (O29230) DNA double-strand break repair rad50 ATPase|
          Length = 886

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -1

Query: 423 DAEKAEAGKLMSKIKALENCNGKMDSEIGELRMALK---EKNGKIEDLTK 283
           + +KAE  ++  +IK++E+   K+  E+  L   LK   E   ++E L K
Sbjct: 190 EEKKAEIERISEEIKSIESLREKLSEEVRNLESRLKELEEHKSRLESLRK 239

>OPTN_PONPY (Q5R923) Optineurin|
          Length = 527

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -1

Query: 420 AEKAEAGKLMSKIKALENCNGKMDSEIGELRMALKEKNGKIEDL 289
           AEKA+   ++S+++   N +G  +    E+RMA  E  G ++++
Sbjct: 152 AEKADLLGIVSELQLKLNSSGSSEDSFVEIRMAEGEAEGSVKEI 195

>HEMA_IAHUR (P17002) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain; Hemagglutinin HA2 chain]
          Length = 565

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
 Frame = -1

Query: 408 EAGKLMSKIKALENCNGKMDSEIG-------ELRMALKEKNGKIEDLTK 283
           +AG L S   A++  NGK++  IG       ++     E  G+I+DL K
Sbjct: 378 QAGDLKSTQAAIDQINGKLNRVIGKTNEKFHQIEKEFSEVEGRIQDLEK 426

>OPTN_HUMAN (Q96CV9) Optineurin (Optic neuropathy-inducing protein)|
           (E3-14.7K-interacting protein) (FIP-2)
           (Huntingtin-interacting protein HYPL) (NEMO-related
           protein) (Transcription factor IIIA-interacting protein)
           (TFIIIA-IntP)
          Length = 577

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -1

Query: 420 AEKAEAGKLMSKIKALENCNGKMDSEIGELRMALKEKNGKIEDL 289
           AEKA+   ++S+++   N +G  +    E+RMA  E  G ++++
Sbjct: 152 AEKADLLGIVSELQLKLNSSGSSEDSFVEIRMAEGEAEGSVKEI 195

>OPTN_MACMU (Q861Q8) Optineurin|
          Length = 571

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -1

Query: 420 AEKAEAGKLMSKIKALENCNGKMDSEIGELRMALKEKNGKIEDL 289
           AEKA+   ++S+++   N +G  +    E+RMA  E  G ++++
Sbjct: 152 AEKADLLGIVSELQLKLNSSGSSEDSFVEIRMAEGEAEGSVKEI 195

>OPTN_MACFA (Q95KA2) Optineurin|
          Length = 571

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -1

Query: 420 AEKAEAGKLMSKIKALENCNGKMDSEIGELRMALKEKNGKIEDL 289
           AEKA+   ++S+++   N +G  +    E+RMA  E  G ++++
Sbjct: 152 AEKADLLGIVSELQLKLNSSGSSEDSFVEIRMAEGEAEGSVKEI 195

>YN51_YEAST (P42843) Hypothetical 88.9 kDa protein in RFA2-STB1 intergenic|
           region
          Length = 763

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 265 LQHLSLLGKVFNLSILFLQCHPQLSNLTV 351
           ++HLSLL       +L   C P LSNLT+
Sbjct: 407 VKHLSLLKINSKFDLLLCSCFPSLSNLTI 435

>RRBP1_HUMAN (Q9P2E9) Ribosome-binding protein 1 (Ribosome receptor protein) (180|
            kDa ribosome receptor homolog) (ES/130-related protein)
          Length = 1410

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = -1

Query: 420  AEKAEAGKLMSKIKALENCNGKMDSEIGELRMALKEKNGKIEDL 289
            A +AEA +  +++K LE+    ++ E  ELR A++++  K  DL
Sbjct: 977  ASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDL 1020

>ALM1_SCHPO (Q9UTK5) Abnormal long morphology protein 1 (Sp8)|
          Length = 1727

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -1

Query: 411  AEAGKLMSKIKALENCNGKMDSEIGELRMALKEKNGKIEDL 289
            ++A +L +++ + EN   +++ EIG L+  L+    K EDL
Sbjct: 1317 SDASRLKNELVSKENLIEELNQEIGHLKSELETVKSKSEDL 1357


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,754,288
Number of Sequences: 219361
Number of extensions: 766060
Number of successful extensions: 2175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2174
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)