ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast57c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_195345.1| Oryza sativa (japonica cultivar-group) putative... 52 0.001
2gb|AC093612.18| Oryza sativa (japonica cultivar-group) chromosom... 52 0.001
3gb|AC105377.12| Oryza sativa chromosome 10 BAC OSJNBa0034E15 gen... 52 0.001
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
5dbj|AK100207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
7gb|AY487780.1| Natrix natrix isolate N040 NADH dehydrogenase sub... 44 0.27
8gb|AY870640.1| Natrix natrix NADH dehydrogenase subunit 2 (ND2) ... 44 0.27
9gb|AY870622.1| Natrix natrix NADH dehydrogenase subunit 2 (ND2) ... 44 0.27
10gb|AY870618.1| Natrix natrix NADH dehydrogenase subunit 2 (ND2) ... 44 0.27
11gb|AY870617.1| Natrix natrix voucher LSUMZ 41506 NADH dehydrogen... 44 0.27
12gb|AC084384.1| Mus musculus BAC clone RP23-24F24 from 15, comple... 42 1.1
13gb|AC108727.6| Homo sapiens 3 BAC RP11-231L11 (Roswell Park Canc... 42 1.1
14gb|AC025750.10| Homo sapiens BAC clone RP11-804P20 from 2, compl... 42 1.1
15gb|AC010203.14| Homo sapiens 12 BAC RP11-175P13 (Roswell Park Ca... 42 1.1
16gb|AC107045.9| Mus musculus chromosome 1, clone RP23-334J7, comp... 42 1.1
17gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.2
18gb|AY024212.1| Oryza sativa microsatellite MRG6537 containing (T... 40 4.2
19emb|Z86062.1|HS121G13 Human DNA sequence from clone RP1-121G13 o... 40 4.2
20emb|AL359457.12| Human DNA sequence from clone RP11-76K19 on chr... 40 4.2
21emb|AL954721.4| Zebrafish DNA sequence from clone BUSM1-119J18 i... 40 4.2
22emb|BX927227.11| Zebrafish DNA sequence from clone CH211-127D13 ... 40 4.2
23emb|BX323858.12| Zebrafish DNA sequence from clone DKEY-102F10 i... 40 4.2
24gb|AY118506.1| Drosophila melanogaster LD10773 full insert cDNA 40 4.2
25ref|NM_136211.3| Drosophila melanogaster CG9320-RA (CG9320), mRNA 40 4.2
26gb|AC150891.3| Medicago truncatula chromosome 2 BAC clone mth2-7... 40 4.2
27gb|AC093047.1| Drosophila melanogaster, chromosome 2L, region 38... 40 4.2
28gb|AC146538.2| Gasterosteus aculeatus clone CH213-118G22, comple... 40 4.2
29emb|BX284646.4| Zebrafish DNA sequence from clone CH211-49J11 in... 40 4.2
30dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
31dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
32dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
33gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome 2L, r... 40 4.2
34gb|AC018733.8| Homo sapiens BAC clone RP11-337H6 from 2, complet... 40 4.2
35gb|AE004475.1| Pseudomonas aeruginosa PAO1, section 36 of 529 of... 40 4.2
36dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
37dbj|AP002836.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
38dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
39ref|XM_318627.2| Anopheles gambiae str. PEST ENSANGP00000020973 ... 40 4.2
40dbj|AK065891.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
41emb|BX293564.5| Zebrafish DNA sequence from clone DKEYP-7F8 in l... 40 4.2
42gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 4.2
43gb|AE003668.5| Drosophila melanogaster chromosome 2L, section 77... 40 4.2
44emb|AL135978.4|CNS01DVN Human chromosome 14 DNA sequence BAC R-1... 40 4.2
45gb|AF025468.2| Caenorhabditis elegans cosmid T27A1, complete seq... 40 4.2
46dbj|AP001687.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 4.2
47gb|AC099722.7| Mus musculus chromosome 3, clone RP23-282E13, com... 40 4.2
48emb|CR847940.9| Zebrafish DNA sequence from clone CH211-250O24 i... 40 4.2
49dbj|AP000459.4| Homo sapiens genomic DNA, chromosome 21q, clone:... 40 4.2
50emb|CT033786.13| Mouse DNA sequence from clone RP24-298F18 on ch... 40 4.2
51emb|AL935160.11| Zebrafish DNA sequence from clone CH211-184C7 i... 40 4.2
52emb|AL954132.14| Zebrafish DNA sequence from clone DKEY-32N7, co... 40 4.2
53emb|CR456684.10| Zebrafish DNA sequence from clone DKEY-46I8 in ... 40 4.2
54gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s... 40 4.2
55gb|AC102340.10| Mus musculus chromosome 3, clone RP23-163J23, co... 40 4.2
56gb|AC144783.4| Mus musculus BAC clone RP23-57A16 from 10, comple... 40 4.2
57emb|CR376825.16| Zebrafish DNA sequence from clone CH211-136O20 ... 40 4.2
58emb|AL845426.9| Mouse DNA sequence from clone RP23-289M11 on chr... 40 4.2
59gb|AC073434.42| Mus musculus strain C57BL/6J chromosome 9 clone ... 40 4.2
60emb|AL133222.2|HS69P17 Homo sapiens chromosome 21 BAC RPCIP704P1... 40 4.2
61gb|AY066394.1| Schmidtea mediterranea clone H.99.10h unknown mRN... 40 4.2
62gb|AC161259.2| Mus musculus BAC clone RP23-465D18 from chromosom... 40 4.2 
>ref|NM_195345.1| Oryza sativa (japonica cultivar-group) putative acetyl transferase
            (OSJNBa0003P07.2), mRNA
          Length = 1458

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 271  ccatcgccgccctgggcagcagcatcgacaccac 304
            |||| ||| |||||||||||||||||||||||||
Sbjct: 1381 ccatggccaccctgggcagcagcatcgacaccac 1348
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>gb|AC093612.18| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0003P07, complete sequence
          Length = 175116

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 271   ccatcgccgccctgggcagcagcatcgacaccac 304
             |||| ||| |||||||||||||||||||||||||
Sbjct: 12691 ccatggccaccctgggcagcagcatcgacaccac 12658
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>gb|AC105377.12| Oryza sativa chromosome 10 BAC OSJNBa0034E15 genomic sequence, complete
             sequence
          Length = 100285

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 271   ccatcgccgccctgggcagcagcatcgacaccac 304
             |||| ||| |||||||||||||||||||||||||
Sbjct: 92396 ccatggccaccctgggcagcagcatcgacaccac 92363
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                 
Query: 271     ccatcgccgccctgggcagcagcatcgacaccac 304
               |||| ||| |||||||||||||||||||||||||
Sbjct: 6294838 ccatggccaccctgggcagcagcatcgacaccac 6294805
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>dbj|AK100207.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042A21, full
            insert sequence
          Length = 2209

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 271  ccatcgccgccctgggcagcagcatcgacaccac 304
            |||| ||| |||||||||||||||||||||||||
Sbjct: 1805 ccatggccaccctgggcagcagcatcgacaccac 1772
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                 
Query: 271     ccatcgccgccctgggcagcagcatcgacaccac 304
               |||| ||| |||||||||||||||||||||||||
Sbjct: 6296424 ccatggccaccctgggcagcagcatcgacaccac 6296391
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>gb|AY487780.1| Natrix natrix isolate N040 NADH dehydrogenase subunit 2 (ND2) gene,
           complete cds; mitochondrial
          Length = 1029

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 9   tcgttctaaataaaataatttt 30
           ||||||||||||||||||||||
Sbjct: 791 tcgttctaaataaaataatttt 812
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>gb|AY870640.1| Natrix natrix NADH dehydrogenase subunit 2 (ND2) gene, complete
           cds; mitochondrial
          Length = 1029

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 9   tcgttctaaataaaataatttt 30
           ||||||||||||||||||||||
Sbjct: 791 tcgttctaaataaaataatttt 812
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>gb|AY870622.1| Natrix natrix NADH dehydrogenase subunit 2 (ND2) gene, complete
           cds; mitochondrial
          Length = 1029

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 9   tcgttctaaataaaataatttt 30
           ||||||||||||||||||||||
Sbjct: 791 tcgttctaaataaaataatttt 812
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>gb|AY870618.1| Natrix natrix NADH dehydrogenase subunit 2 (ND2) gene, complete
           cds; mitochondrial
          Length = 1029

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 9   tcgttctaaataaaataatttt 30
           ||||||||||||||||||||||
Sbjct: 791 tcgttctaaataaaataatttt 812
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>gb|AY870617.1| Natrix natrix voucher LSUMZ 41506 NADH dehydrogenase subunit 2
           (ND2) gene, complete cds; mitochondrial
          Length = 1029

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 9   tcgttctaaataaaataatttt 30
           ||||||||||||||||||||||
Sbjct: 791 tcgttctaaataaaataatttt 812
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>gb|AC084384.1| Mus musculus BAC clone RP23-24F24 from 15, complete sequence
          Length = 208833

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 79    acatacatatatgtgcgtgtgacat 103
             ||||||||||||||| |||||||||
Sbjct: 27465 acatacatatatgtgtgtgtgacat 27441
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>gb|AC108727.6| Homo sapiens 3 BAC RP11-231L11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 155898

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    aaataaaataattttgacaag 36
             |||||||||||||||||||||
Sbjct: 91393 aaataaaataattttgacaag 91373
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>gb|AC025750.10| Homo sapiens BAC clone RP11-804P20 from 2, complete sequence
          Length = 151367

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 15     taaataaaataattttgacaa 35
              |||||||||||||||||||||
Sbjct: 102143 taaataaaataattttgacaa 102163
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>gb|AC010203.14| Homo sapiens 12 BAC RP11-175P13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167569

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 79     acatacatatatgtgcgtgtg 99
              |||||||||||||||||||||
Sbjct: 149105 acatacatatatgtgcgtgtg 149085
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>gb|AC107045.9| Mus musculus chromosome 1, clone RP23-334J7, complete sequence
          Length = 222700

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    aaataaaataattttgacaag 36
             |||||||||||||||||||||
Sbjct: 94542 aaataaaataattttgacaag 94522
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>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02,
             complete sequence
          Length = 125650

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   ggcagcagcatcgacaccac 304
             ||||||||||||||||||||
Sbjct: 58469 ggcagcagcatcgacaccac 58450
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>gb|AY024212.1| Oryza sativa microsatellite MRG6537 containing (TATG)X12, closest
           to marker C668, genomic sequence
          Length = 248

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 79  acatacatatatgtgcgtgtgaca 102
           ||||||||||||||| ||||||||
Sbjct: 109 acatacatatatgtgtgtgtgaca 86
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>emb|Z86062.1|HS121G13 Human DNA sequence from clone RP1-121G13 on chromosome 6q16 Contains
             the 3' end of the RNAH gene for an RNA helicase, the 5'
             end of the SIM1 gene for single-minded homolog 1
             (Drosophila), an RP42 homolog pseudogene a novel gene and
             three CpG islands, complete sequence
          Length = 176932

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    gttctaaataaaataatttt 30
             ||||||||||||||||||||
Sbjct: 34599 gttctaaataaaataatttt 34618
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>emb|AL359457.12| Human DNA sequence from clone RP11-76K19 on chromosome 13 Contains a
             mitochondrial ribosomal protein S31 (MRPS31) pseudogene
             an estrogen-related receptor alpha pseudogene (ESRRAP),
             the 5' end of a novel gene, a novel protein (LOC113201)
             pseudogene, a novel gene and four CpG islands, complete
             sequence
          Length = 129779

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   ctttgggtctcacccacacc 248
             ||||||||||||||||||||
Sbjct: 52084 ctttgggtctcacccacacc 52103
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>emb|AL954721.4| Zebrafish DNA sequence from clone BUSM1-119J18 in linkage group 20
             Contains a novel gene for a protein with helix-loop-helix
             DNA-binding domain, a novel gene similar to rat KIDINS220
             (kinase D-interacting substance of 220 kDa) and two CpG
             islands, complete sequence
          Length = 95798

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    taaataaaataattttgaca 34
             ||||||||||||||||||||
Sbjct: 17529 taaataaaataattttgaca 17548
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>emb|BX927227.11| Zebrafish DNA sequence from clone CH211-127D13 in linkage group 5,
              complete sequence
          Length = 135384

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     ctaaataaaataattttgac 33
              ||||||||||||||||||||
Sbjct: 103536 ctaaataaaataattttgac 103517
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>emb|BX323858.12| Zebrafish DNA sequence from clone DKEY-102F10 in linkage group 14,
             complete sequence
          Length = 184463

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     tcgttctaaataaaataatt 28
             ||||||||||||||||||||
Sbjct: 11480 tcgttctaaataaaataatt 11499
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>gb|AY118506.1| Drosophila melanogaster LD10773 full insert cDNA
          Length = 1963

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 286  gcagcagcatcgacaccacg 305
            ||||||||||||||||||||
Sbjct: 1044 gcagcagcatcgacaccacg 1063
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>ref|NM_136211.3| Drosophila melanogaster CG9320-RA (CG9320), mRNA
          Length = 2039

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 286  gcagcagcatcgacaccacg 305
            ||||||||||||||||||||
Sbjct: 1156 gcagcagcatcgacaccacg 1175
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>gb|AC150891.3| Medicago truncatula chromosome 2 BAC clone mth2-76a9, complete sequence
          Length = 142579

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    cacaaccaaacttcaaatta 69
             ||||||||||||||||||||
Sbjct: 45116 cacaaccaaacttcaaatta 45135
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>gb|AC093047.1| Drosophila melanogaster, chromosome 2L, region 38D-38E, BAC clone
              BACR31P14, complete sequence
          Length = 156806

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 286    gcagcagcatcgacaccacg 305
              ||||||||||||||||||||
Sbjct: 153051 gcagcagcatcgacaccacg 153070
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>gb|AC146538.2| Gasterosteus aculeatus clone CH213-118G22, complete sequence
          Length = 211945

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   gctggcgaagtttctgtaac 178
             ||||||||||||||||||||
Sbjct: 94946 gctggcgaagtttctgtaac 94927
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>emb|BX284646.4| Zebrafish DNA sequence from clone CH211-49J11 in linkage group 5,
             complete sequence
          Length = 182774

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    ctaaataaaataattttgac 33
             ||||||||||||||||||||
Sbjct: 82382 ctaaataaaataattttgac 82401
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 285      ggcagcagcatcgacaccac 304
                ||||||||||||||||||||
Sbjct: 20636429 ggcagcagcatcgacaccac 20636410
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 47      ttgcacaaccaaacttcaaa 66
               ||||||||||||||||||||
Sbjct: 1631985 ttgcacaaccaaacttcaaa 1632004
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 79      acatacatatatgtgcgtgtgaca 102
               ||||||||||||||| ||||||||
Sbjct: 4660182 acatacatatatgtgtgtgtgaca 4660159
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>gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome 2L, region 38E-38F, BAC clone
             BACR07D17, complete sequence
          Length = 173422

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   gcagcagcatcgacaccacg 305
             ||||||||||||||||||||
Sbjct: 23653 gcagcagcatcgacaccacg 23672
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>gb|AC018733.8| Homo sapiens BAC clone RP11-337H6 from 2, complete sequence
          Length = 163117

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    aattttgacaaggaggagta 44
             ||||||||||||||||||||
Sbjct: 72779 aattttgacaaggaggagta 72760
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>gb|AE004475.1| Pseudomonas aeruginosa PAO1, section 36 of 529 of the complete genome
          Length = 10859

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 270  tccatcgccgccctgggcagcagcatcg 297
            ||||||||||||| || |||||||||||
Sbjct: 2452 tccatcgccgcccaggccagcagcatcg 2425
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>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1007_D04
          Length = 125503

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    ttgcacaaccaaacttcaaa 66
             ||||||||||||||||||||
Sbjct: 69088 ttgcacaaccaaacttcaaa 69107
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>dbj|AP002836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0512G09
          Length = 146921

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 79    acatacatatatgtgcgtgtgaca 102
             ||||||||||||||| ||||||||
Sbjct: 20427 acatacatatatgtgtgtgtgaca 20404
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>dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0695A04
          Length = 158133

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 79    acatacatatatgtgcgtgtgaca 102
             ||||||||||||||| ||||||||
Sbjct: 67398 acatacatatatgtgtgtgtgaca 67375
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>ref|XM_318627.2| Anopheles gambiae str. PEST ENSANGP00000020973 (ENSANGG00000018484),
            partial mRNA
          Length = 2865

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 254  ctcctccgtaaacacgtccatcgc 277
            ||||||||| ||||||||||||||
Sbjct: 1044 ctcctccgtcaacacgtccatcgc 1021
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>dbj|AK065891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044D15, full
            insert sequence
          Length = 1975

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 285  ggcagcagcatcgacaccac 304
            ||||||||||||||||||||
Sbjct: 1367 ggcagcagcatcgacaccac 1348
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>emb|BX293564.5| Zebrafish DNA sequence from clone DKEYP-7F8 in linkage group 20,
             complete sequence
          Length = 145495

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    taaataaaataattttgaca 34
             ||||||||||||||||||||
Sbjct: 71425 taaataaaataattttgaca 71444
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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 225     tcgtctttgggtctcaccca 244
               ||||||||||||||||||||
Sbjct: 4809718 tcgtctttgggtctcaccca 4809737
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>gb|AE003668.5| Drosophila melanogaster chromosome 2L, section 77 of 83 of the complete
             sequence
          Length = 270158

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   gcagcagcatcgacaccacg 305
             ||||||||||||||||||||
Sbjct: 13467 gcagcagcatcgacaccacg 13486
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>emb|AL135978.4|CNS01DVN Human chromosome 14 DNA sequence BAC R-125H8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173043

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    aaacatacatatatgtgcgt 96
             ||||||||||||||||||||
Sbjct: 45033 aaacatacatatatgtgcgt 45052
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>gb|AF025468.2| Caenorhabditis elegans cosmid T27A1, complete sequence
          Length = 36075

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    tctaaataaaataattttga 32
             ||||||||||||||||||||
Sbjct: 26222 tctaaataaaataattttga 26203
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>dbj|AP001687.1| Homo sapiens genomic DNA, chromosome 21q, section 31/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    gtctttgggtctcacccaca 246
              ||||||||||||||||||||
Sbjct: 137754 gtctttgggtctcacccaca 137773
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>gb|AC099722.7| Mus musculus chromosome 3, clone RP23-282E13, complete sequence
          Length = 233425

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     atacatatatgtgcgtgtga 100
              ||||||||||||||||||||
Sbjct: 137141 atacatatatgtgcgtgtga 137160
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>emb|CR847940.9| Zebrafish DNA sequence from clone CH211-250O24 in linkage group 11,
             complete sequence
          Length = 102840

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     tcgttctaaataaaataatt 28
             ||||||||||||||||||||
Sbjct: 52375 tcgttctaaataaaataatt 52394
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>dbj|AP000459.4| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-42M17, complete
             sequence
          Length = 171863

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   gtctttgggtctcacccaca 246
             ||||||||||||||||||||
Sbjct: 26673 gtctttgggtctcacccaca 26692
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>emb|CT033786.13| Mouse DNA sequence from clone RP24-298F18 on chromosome 14, complete
              sequence
          Length = 185421

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     catacatatatgtgcgtgtg 99
              ||||||||||||||||||||
Sbjct: 152102 catacatatatgtgcgtgtg 152083
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>emb|AL935160.11| Zebrafish DNA sequence from clone CH211-184C7 in linkage group 12,
             complete sequence
          Length = 140401

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    aataaaataattttgacaag 36
             ||||||||||||||||||||
Sbjct: 46293 aataaaataattttgacaag 46274
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>emb|AL954132.14| Zebrafish DNA sequence from clone DKEY-32N7, complete sequence
          Length = 197745

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     gagtacattgcacaaccaaa 59
              ||||||||||||||||||||
Sbjct: 194239 gagtacattgcacaaccaaa 194258
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>emb|CR456684.10| Zebrafish DNA sequence from clone DKEY-46I8 in linkage group 12, complete
              sequence
          Length = 262809

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     aataaaataattttgacaag 36
              ||||||||||||||||||||
Sbjct: 184937 aataaaataattttgacaag 184956
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>gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s DS04217 (D56) and DS00582
             (D85)), complete sequence
          Length = 142799

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   gcagcagcatcgacaccacg 305
             ||||||||||||||||||||
Sbjct: 65882 gcagcagcatcgacaccacg 65863
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>gb|AC102340.10| Mus musculus chromosome 3, clone RP23-163J23, complete sequence
          Length = 199087

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 81  atacatatatgtgcgtgtga 100
           ||||||||||||||||||||
Sbjct: 146 atacatatatgtgcgtgtga 165
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>gb|AC144783.4| Mus musculus BAC clone RP23-57A16 from 10, complete sequence
          Length = 246132

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     acatacatatatgtgcgtgt 98
              ||||||||||||||||||||
Sbjct: 154000 acatacatatatgtgcgtgt 154019
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>emb|CR376825.16| Zebrafish DNA sequence from clone CH211-136O20 in linkage group 14,
              complete sequence
          Length = 176973

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      tcgttctaaataaaataatt 28
              ||||||||||||||||||||
Sbjct: 148175 tcgttctaaataaaataatt 148194
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>emb|AL845426.9| Mouse DNA sequence from clone RP23-289M11 on chromosome 2, complete
              sequence
          Length = 181434

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     aataattttgacaaggagga 41
              ||||||||||||||||||||
Sbjct: 129489 aataattttgacaaggagga 129508
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>gb|AC073434.42| Mus musculus strain C57BL/6J chromosome 9 clone rp23-159l13, complete
            sequence
          Length = 184073

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   acatacatatatgtgcgtgt 98
            ||||||||||||||||||||
Sbjct: 3268 acatacatatatgtgcgtgt 3287
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>emb|AL133222.2|HS69P17 Homo sapiens chromosome 21 BAC RPCIP704P1769, complete sequence
          Length = 102619

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   gtctttgggtctcacccaca 246
             ||||||||||||||||||||
Sbjct: 47940 gtctttgggtctcacccaca 47921
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>gb|AY066394.1| Schmidtea mediterranea clone H.99.10h unknown mRNA sequence
          Length = 649

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 13  tctaaataaaataattttga 32
           ||||||||||||||||||||
Sbjct: 502 tctaaataaaataattttga 521
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>gb|AC161259.2| Mus musculus BAC clone RP23-465D18 from chromosome 9, complete sequence
          Length = 175659

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    acatacatatatgtgcgtgt 98
             ||||||||||||||||||||
Sbjct: 47751 acatacatatatgtgcgtgt 47732


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,951,525
Number of Sequences: 3902068
Number of extensions: 3951525
Number of successful extensions: 93283
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93035
Number of HSP's gapped (non-prelim): 248
length of query: 316
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 294
effective length of database: 17,147,199,772
effective search space: 5041276732968
effective search space used: 5041276732968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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