ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast57c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC069309.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 0.81
2emb|AL929044.17| Zebrafish DNA sequence from clone CH211-245D9 i... 42 0.81
3emb|CR762472.6| Zebrafish DNA sequence from clone DKEY-75G19 in ... 42 0.81
4gb|AF444195.1| Oryza sativa malate dehydrogenase (MDH) mRNA, com... 42 0.81
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.81
6dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.81
7dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic D... 42 0.81
8dbj|AK104770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.81
9dbj|AK071699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.81
10dbj|AP003053.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.81
11gb|AC118545.20| Mus musculus strain C57BL/6J clone rp23-324o14 m... 40 3.2
12emb|AL441986.19| Human DNA sequence from clone RP11-349O10 on ch... 40 3.2
13gb|DQ397865.1| Cenarchaeum symbiosum clone C21E02, complete sequ... 40 3.2
14dbj|AK020312.1| Mus musculus adult male epididymis cDNA, RIKEN f... 40 3.2
15gb|AC131664.3| Mus musculus BAC clone RP23-274J16 from chromosom... 40 3.2
16gb|AF275347.1|AF275347 Cladosporium fulvum aldehyde dehydrogenas... 40 3.2
17dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 40 3.2
18gb|AC091484.8| Mus musculus strain C57BL/6J chromosome 17 clone ... 40 3.2
19emb|AL139194.7|CNS01DXB Human chromosome 14 DNA sequence BAC C-2... 40 3.2

>gb|AC069309.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-154D15, complete
              sequence
          Length = 174754

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 188    acccctcaacaagacctgggt 208
              |||||||||||||||||||||
Sbjct: 152575 acccctcaacaagacctgggt 152595



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>emb|AL929044.17| Zebrafish DNA sequence from clone CH211-245D9 in linkage group 1,
             complete sequence
          Length = 151090

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   ttattgtaaagctcaaatctt 141
             |||||||||||||||||||||
Sbjct: 20414 ttattgtaaagctcaaatctt 20394



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>emb|CR762472.6| Zebrafish DNA sequence from clone DKEY-75G19 in linkage group 1,
             complete sequence
          Length = 176472

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 121   ttattgtaaagctcaaatctt 141
             |||||||||||||||||||||
Sbjct: 15293 ttattgtaaagctcaaatctt 15313



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>gb|AF444195.1| Oryza sativa malate dehydrogenase (MDH) mRNA, complete cds; nuclear
            gene for mitochondrial product
          Length = 1257

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 119  tcttattgtaaagctcaaatc 139
            |||||||||||||||||||||
Sbjct: 1156 tcttattgtaaagctcaaatc 1136



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 119      tcttattgtaaagctcaaatc 139
                |||||||||||||||||||||
Sbjct: 26188014 tcttattgtaaagctcaaatc 26187994



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>dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1316_H05
          Length = 105346

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 119   tcttattgtaaagctcaaatc 139
             |||||||||||||||||||||
Sbjct: 93431 tcttattgtaaagctcaaatc 93411



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>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           BAC clone:OJ1159_D09
          Length = 147770

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 119 tcttattgtaaagctcaaatc 139
           |||||||||||||||||||||
Sbjct: 245 tcttattgtaaagctcaaatc 225



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>dbj|AK104770.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A07, full
            insert sequence
          Length = 1279

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 119  tcttattgtaaagctcaaatc 139
            |||||||||||||||||||||
Sbjct: 1198 tcttattgtaaagctcaaatc 1178



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>dbj|AK071699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108E15, full
            insert sequence
          Length = 1369

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 119  tcttattgtaaagctcaaatc 139
            |||||||||||||||||||||
Sbjct: 1272 tcttattgtaaagctcaaatc 1252



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>dbj|AP003053.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0047B08
          Length = 57846

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 119   tcttattgtaaagctcaaatc 139
             |||||||||||||||||||||
Sbjct: 29144 tcttattgtaaagctcaaatc 29124



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>gb|AC118545.20| Mus musculus strain C57BL/6J clone rp23-324o14 map 17, complete sequence
          Length = 236365

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     aattgttcattgccagttca 50
              ||||||||||||||||||||
Sbjct: 191492 aattgttcattgccagttca 191473



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>emb|AL441986.19| Human DNA sequence from clone RP11-349O10 on chromosome 13 Contains two
             novel genes and a peroxiredoxin 3 (PRDX3) pseudogene,
             complete sequence
          Length = 188208

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    aaagcttgacacaaaactag 69
             ||||||||||||||||||||
Sbjct: 67105 aaagcttgacacaaaactag 67124



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>gb|DQ397865.1| Cenarchaeum symbiosum clone C21E02, complete sequence
          Length = 39981

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    ggggggcattaccccgccgg 115
             ||||||||||||||||||||
Sbjct: 25209 ggggggcattaccccgccgg 25190



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>dbj|AK020312.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched
           library, clone:9230104J12 product:unclassifiable, full
           insert sequence
          Length = 744

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 gtaaagctcaaatcttccat 145
           ||||||||||||||||||||
Sbjct: 709 gtaaagctcaaatcttccat 690



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>gb|AC131664.3| Mus musculus BAC clone RP23-274J16 from chromosome 5, complete sequence
          Length = 189996

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   ggcctaactaacttgcattt 247
             ||||||||||||||||||||
Sbjct: 89908 ggcctaactaacttgcattt 89889



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>gb|AF275347.1|AF275347 Cladosporium fulvum aldehyde dehydrogenase (aldh) mRNA, complete
           cds
          Length = 1659

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 136 aatcttccatgcccacatga 155
           ||||||||||||||||||||
Sbjct: 585 aatcttccatgcccacatga 566



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>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 119     tcttattgtaaagctcaaat 138
               ||||||||||||||||||||
Sbjct: 1273123 tcttattgtaaagctcaaat 1273142



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>gb|AC091484.8| Mus musculus strain C57BL/6J chromosome 17 clone rp23-386a1, complete
             sequence
          Length = 205343

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    aattgttcattgccagttca 50
             ||||||||||||||||||||
Sbjct: 85503 aattgttcattgccagttca 85484



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>emb|AL139194.7|CNS01DXB Human chromosome 14 DNA sequence BAC C-2190G12 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 157120

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 115   gaaatcttattgtaaagctcaaat 138
             ||||||||||||||||| ||||||
Sbjct: 43353 gaaatcttattgtaaagttcaaat 43376


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,971,431
Number of Sequences: 3902068
Number of extensions: 1971431
Number of successful extensions: 49329
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49290
Number of HSP's gapped (non-prelim): 39
length of query: 248
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 226
effective length of database: 17,147,199,772
effective search space: 3875267148472
effective search space used: 3875267148472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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