| Clone Name | rbast57c02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC069309.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-154D15, complete sequence Length = 174754 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 acccctcaacaagacctgggt 208 ||||||||||||||||||||| Sbjct: 152575 acccctcaacaagacctgggt 152595
>emb|AL929044.17| Zebrafish DNA sequence from clone CH211-245D9 in linkage group 1, complete sequence Length = 151090 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 ttattgtaaagctcaaatctt 141 ||||||||||||||||||||| Sbjct: 20414 ttattgtaaagctcaaatctt 20394
>emb|CR762472.6| Zebrafish DNA sequence from clone DKEY-75G19 in linkage group 1, complete sequence Length = 176472 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 ttattgtaaagctcaaatctt 141 ||||||||||||||||||||| Sbjct: 15293 ttattgtaaagctcaaatctt 15313
>gb|AF444195.1| Oryza sativa malate dehydrogenase (MDH) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1257 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 tcttattgtaaagctcaaatc 139 ||||||||||||||||||||| Sbjct: 1156 tcttattgtaaagctcaaatc 1136
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 tcttattgtaaagctcaaatc 139 ||||||||||||||||||||| Sbjct: 26188014 tcttattgtaaagctcaaatc 26187994
>dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1316_H05 Length = 105346 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 tcttattgtaaagctcaaatc 139 ||||||||||||||||||||| Sbjct: 93431 tcttattgtaaagctcaaatc 93411
>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1159_D09 Length = 147770 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 tcttattgtaaagctcaaatc 139 ||||||||||||||||||||| Sbjct: 245 tcttattgtaaagctcaaatc 225
>dbj|AK104770.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A07, full insert sequence Length = 1279 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 tcttattgtaaagctcaaatc 139 ||||||||||||||||||||| Sbjct: 1198 tcttattgtaaagctcaaatc 1178
>dbj|AK071699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108E15, full insert sequence Length = 1369 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 tcttattgtaaagctcaaatc 139 ||||||||||||||||||||| Sbjct: 1272 tcttattgtaaagctcaaatc 1252
>dbj|AP003053.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0047B08 Length = 57846 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 tcttattgtaaagctcaaatc 139 ||||||||||||||||||||| Sbjct: 29144 tcttattgtaaagctcaaatc 29124
>gb|AC118545.20| Mus musculus strain C57BL/6J clone rp23-324o14 map 17, complete sequence Length = 236365 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 aattgttcattgccagttca 50 |||||||||||||||||||| Sbjct: 191492 aattgttcattgccagttca 191473
>emb|AL441986.19| Human DNA sequence from clone RP11-349O10 on chromosome 13 Contains two novel genes and a peroxiredoxin 3 (PRDX3) pseudogene, complete sequence Length = 188208 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 aaagcttgacacaaaactag 69 |||||||||||||||||||| Sbjct: 67105 aaagcttgacacaaaactag 67124
>gb|DQ397865.1| Cenarchaeum symbiosum clone C21E02, complete sequence Length = 39981 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 ggggggcattaccccgccgg 115 |||||||||||||||||||| Sbjct: 25209 ggggggcattaccccgccgg 25190
>dbj|AK020312.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched library, clone:9230104J12 product:unclassifiable, full insert sequence Length = 744 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 gtaaagctcaaatcttccat 145 |||||||||||||||||||| Sbjct: 709 gtaaagctcaaatcttccat 690
>gb|AC131664.3| Mus musculus BAC clone RP23-274J16 from chromosome 5, complete sequence Length = 189996 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ggcctaactaacttgcattt 247 |||||||||||||||||||| Sbjct: 89908 ggcctaactaacttgcattt 89889
>gb|AF275347.1|AF275347 Cladosporium fulvum aldehyde dehydrogenase (aldh) mRNA, complete cds Length = 1659 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 aatcttccatgcccacatga 155 |||||||||||||||||||| Sbjct: 585 aatcttccatgcccacatga 566
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome Length = 1584804 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 tcttattgtaaagctcaaat 138 |||||||||||||||||||| Sbjct: 1273123 tcttattgtaaagctcaaat 1273142
>gb|AC091484.8| Mus musculus strain C57BL/6J chromosome 17 clone rp23-386a1, complete sequence Length = 205343 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 aattgttcattgccagttca 50 |||||||||||||||||||| Sbjct: 85503 aattgttcattgccagttca 85484
>emb|AL139194.7|CNS01DXB Human chromosome 14 DNA sequence BAC C-2190G12 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 157120 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 gaaatcttattgtaaagctcaaat 138 ||||||||||||||||| |||||| Sbjct: 43353 gaaatcttattgtaaagttcaaat 43376 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,971,431 Number of Sequences: 3902068 Number of extensions: 1971431 Number of successful extensions: 49329 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49290 Number of HSP's gapped (non-prelim): 39 length of query: 248 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 226 effective length of database: 17,147,199,772 effective search space: 3875267148472 effective search space used: 3875267148472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)