>BOX5_NOTVI (P53771) Homeobox protein box-5 (NVHBOX-5) (Fragment)|
          Length = 258

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 217 QHHHPLNQHRPPEHGDH-ASR*GGRRLGLPPTPIHPVPRADARRILRVLAHRHAG 378
           Q H+PL+   PP  G +  S  GGR LG P +P H  P+  A   L     +H G
Sbjct: 44  QGHYPLHSFHPPTEGPYGGSGYGGRTLGYPYSP-HGHPQHHASPYLPYHQGQHGG 97

>PIAS3_RAT (O70260) Protein inhibitor of activated STAT protein 3 (Potassium|
           channel-associated protein) (KChAP)
          Length = 628

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = +2

Query: 236 TSTDHQS-TVTMPADEEDAASGFL-----PPPSIPSLAPTLGGSCASLHTATPVGAP 388
           T + H S +V    DE+D    F      PP  +  LAPTLG S  S   ATP  AP
Sbjct: 537 TESQHYSPSVITSLDEQDTLGHFFQFRGTPPHFLGPLAPTLGSSHRS---ATPAPAP 590

>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor|
          Length = 725

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 25/118 (21%), Positives = 41/118 (34%)
 Frame = +2

Query: 23  STSCNLTAETGLITPKMNIXXXXXXXXXXXXXXXXXXXIDTTEPNTTKHHLSTYHISKSE 202
           S S   T+ +   T   +                    + +T  ++T    S+   S S 
Sbjct: 199 SPSSTSTSSSSTSTSSSSTSTSSSSTSTSPSSTSTSSSLTSTSSSSTSTSQSSTSTSSSS 258

Query: 203 LGVYSSIIIH*TSTDHQSTVTMPADEEDAASGFLPPPSIPSLAPTLGGSCASLHTATP 376
                S     TST   ST T P+ +  +AS         S +P+L  S  +L + +P
Sbjct: 259 TSTSPSS----TSTSSSSTSTSPSSKSTSASSTSTSSYSTSTSPSLTSSSPTLASTSP 312



 Score = 27.7 bits (60), Expect = 6.9
 Identities = 23/113 (20%), Positives = 40/113 (35%)
 Frame = +2

Query: 23  STSCNLTAETGLITPKMNIXXXXXXXXXXXXXXXXXXXIDTTEPNTTKHHLSTYHISKSE 202
           S +C+  AET      +                     + T++ +  KH    YH++ S 
Sbjct: 475 SYACSTCAETSHSYSSVQTASSSSVTQQTTSTKSWVSSMTTSDEDFNKHATGKYHVTSSG 534

Query: 203 LGVYSSIIIH*TSTDHQSTVTMPADEEDAASGFLPPPSIPSLAPTLGGSCASL 361
               S+ +   TST   S++   + E+ +        S  SL+ TL      L
Sbjct: 535 TSTISTSVSEATST---SSIDSESQEQSSHLLSTSVLSSSSLSATLSSDSTIL 584

>KR73_ICHV1 (Q00094) Gene 73 protein kinase (EC 2.7.11.1)|
          Length = 962

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 220 HHHPLNQHRPPEH--GDHASR*GGRRLGLPPTPIHPVPRADARRILRVLAHRHAGRRA 387
           H  P+   +PP+     H  +   R+   PPTP  PV +A A +   V+++   GRRA
Sbjct: 96  HSVPIPVFKPPDQLTAPHTVK---RKPTQPPTPTRPVHQAQATQRRPVVSYDTTGRRA 150

>FILA_MOUSE (P11088) Filaggrin (Fragment)|
          Length = 336

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 387 GAPTGVAVCKDAQDPPSVGARDGMDGGGRKPEAASSSS 274
           G+  G +  +   D P V AR G  G G+ P+A+  SS
Sbjct: 221 GSNQGHSSSRHQADSPRVSARSGSGGRGQSPDASGRSS 258

>CH36_CERCA (P17110) Chorion protein S36|
          Length = 320

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 206 GVYSSIIIH*TSTDHQSTVTMPADEEDAASGFLPPPSI--PSLAPT-LGGSCASLHTATP 376
           GVY S+++     +HQ   T P          LPP  +  P+L PT +GG  A++  A P
Sbjct: 131 GVYRSLLVPSGQNNHQVIATQP----------LPPIIVNQPALPPTQIGGGPAAVVKAAP 180

Query: 377 V 379
           V
Sbjct: 181 V 181

>B3A2_MOUSE (P13808) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 23.5 bits (49), Expect(2) = 3.9
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +2

Query: 275 DEEDA--ASGFLPPPSIPSLAPT 337
           DEE+A  A GF  PP  PS A T
Sbjct: 126 DEEEASEAEGFRAPPQQPSPATT 148



 Score = 23.5 bits (49), Expect(2) = 3.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 223 HHPLNQHRPPE 255
           HHPL+ H PP+
Sbjct: 81  HHPLSTHLPPD 91

>RASA1_BOVIN (P09851) Ras GTPase-activating protein 1 (GTPase-activating|
           protein) (GAP) (Ras p21 protein activator) (p120GAP)
           (RasGAP)
          Length = 1044

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 251 QSTVTMPADEEDAASGFLPPPSIPSLAPTLGGSCASLHTATPVGAP 388
           + T ++P +   A  GF P P  P   PTLG    ++     +  P
Sbjct: 114 KGTTSLPTETFGAGGGFPPLPPPPPQLPTLGAGLGTVDEGDSLDGP 159

>Y966_TREPA (O83932) Hypothetical protein TP0966 precursor|
          Length = 544

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 248 HQSTVTMPADEEDAASGFLPPPSIPSLAPTLGGSCASLHTATPVG 382
           H ++  +P   E  A G  P P +P+  P  GG+ A+      VG
Sbjct: 50  HTASEAVPPAPEPRAEGEQPSPLVPTALPVPGGAVAARAAPGTVG 94

>NALD2_MOUSE (Q9CZR2) N-acetylated-alpha-linked acidic dipeptidase 2 (EC|
           3.4.17.21) (N-acetylated-alpha-linked acidic dipeptidase
           II) (NAALADase II) (Glutamate carboxypeptidase III)
           (GCPIII) (N-acetylaspartylglutamate peptidase II)
           (NAAG-peptidase II)
          Length = 740

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 292 LGLPPTPIHPVPRADARRILRVL 360
           +G+P  P+HP+   DA R+LR L
Sbjct: 277 VGIPNIPVHPIGYNDAERLLRNL 299

>PIAS3_HUMAN (Q9Y6X2) Protein inhibitor of activated STAT protein 3|
          Length = 628

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
 Frame = +2

Query: 239 STDHQSTVTMPADEEDAASGFLPPPSIPS-----LAPTLGGSCASLHTATPVG 382
           S  +  +V    DE+DA   F      PS     LAPTLG S  S   A P G
Sbjct: 539 SQHYGPSVITSLDEQDALGHFFQYRGTPSHFLGPLAPTLGSSHCSATPAPPPG 591

>H15_DROME (Q94890) T-box protein H15|
          Length = 660

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 220 HHHPLNQHRPPEHGDH 267
           HHHPLN H    H  H
Sbjct: 58  HHHPLNNHHNHNHNQH 73

>DNAA_PROMM (Q7V6H4) Chromosomal replication initiator protein dnaA|
          Length = 465

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +2

Query: 260 VTMPADEEDAASGFLPP---PSIPSLAPTLGGSCASL 361
           V++ A EED+A   LPP    SIPS  PT   + AS+
Sbjct: 77  VSVQAQEEDSAERVLPPMTSASIPSPLPTAETTTASV 113

>MSL1_DROME (P50535) Protein male-specific lethal-1|
          Length = 1039

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 239 STDHQSTVTMPADEEDAASGFL-PPPSIPSLAPTLGGSCASLHTATPVGAP 388
           S  H S VT+    E  A+  + PPPS P  + T+  +     T TP   P
Sbjct: 708 SQSHSSQVTLKKIRERVATNLIYPPPSAPVSSTTITPAPTPSTTPTPGSTP 758

>EFNB3_MOUSE (O35393) Ephrin-B3 precursor|
          Length = 340

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
 Frame = +2

Query: 263 TMPADEED-----AASGFLPPPSIPSLAPTLGG 346
           T+P D         A G LPPPS+P++A   GG
Sbjct: 202 TIPGDPSSNATSRGAEGPLPPPSMPAVAGAAGG 234

>VAX2_HUMAN (Q9UIW0) Ventral anterior homeobox 2|
          Length = 290

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 314 MGVGGSPRRRPPHRLAWSPCSGGRC 240
           MG GG+ R R P R A S   GGRC
Sbjct: 1   MGDGGAERDRGPARRAESGGGGGRC 25

>YRN9_CAEEL (Q09609) Hypothetical protein R07B1.9|
          Length = 770

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +2

Query: 215 SSIIIH*TSTDHQSTVTMPADEEDAASGFL 304
           SS I+H  ST   STV  P  EE   SG L
Sbjct: 638 SSYILHHRSTSPDSTVVAPLGEEQFGSGTL 667

>CTGE6_HUMAN (Q86UF2) Protein cTAGE-6 (cTAGE family member 6)|
          Length = 732

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 263 TMPADEEDAASGFLPPPSIPSLAP 334
           ++PA+ E    GF+PPP  P   P
Sbjct: 636 SLPAENEATGPGFIPPPLAPVRGP 659

>TXLNB_HUMAN (Q8N3L3) Beta-taxilin (Muscle-derived protein 77) (hMDP77)|
          Length = 684

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 221 IIIH*TSTDHQSTVTMP--ADEEDAASGFLPPPSIPSLAPT 337
           II H  ST HQS  T P     +++A   L  P  P L P+
Sbjct: 509 IIHHPESTPHQSKETQPEIGSSQESADAALKEPEQPPLIPS 549

>CTGE5_HUMAN (O15320) Cutaneous T-cell lymphoma-associated antigen 5 (cTAGE-5|
           protein) (cTAGE family member 5) (Meningioma-expressed
           antigen 6/11) (MEA6/MEA11)
          Length = 804

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 263 TMPADEEDAASGFLPPPSIPSLAP 334
           ++PA+ E    GF+PPP  P   P
Sbjct: 679 SLPAENEATGPGFVPPPLAPVRGP 702

>PI3K2_DICDI (P54674) Phosphatidylinositol 3-kinase 2 (EC 2.7.1.137)|
           (PI3-kinase) (PtdIns-3-kinase) (PI3K)
          Length = 1858

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 387 GAPTGVAVCKDAQDPPSVGARDGMDGGGRKPEAASS 280
           G+P  +     +Q PPS+ +  G  GGG  P   S+
Sbjct: 541 GSPNSIRASISSQLPPSLSSIGGGGGGGSGPNVVSN 576

>PRR3_HUMAN (P79522) Proline-rich protein 3 (MHC class I region proline-rich|
           protein CAT56)
          Length = 188

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 214 QQHHHPLNQHRP--PEHGDHASR*GGRRLGLPPTPIHPVPRADAR 342
           Q HH P  Q +P  PE  +      G  +G PP+ + P P A+ +
Sbjct: 7   QNHHQPPTQQQPPLPEREETGDEEDGSPIG-PPSLLGPPPMANGK 50

>PPB_BOMMO (P29523) Membrane-bound alkaline phosphatase precursor (EC 3.1.3.1)|
           (M-ALP)
          Length = 547

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 317 WMGVGGSPRRRPPHRLAWSPCSG 249
           WM  G   +   PHR+AW+ C G
Sbjct: 491 WMFSGLYEQTHVPHRMAWAACMG 513

>FOLH1_PIG (O77564) Glutamate carboxypeptidase 2 (EC 3.4.17.21) (Glutamate|
           carboxypeptidase II) (Membrane glutamate
           carboxypeptidase) (mGCP) (N-acetylated-alpha-linked
           acidic dipeptidase I) (NAALADase I)
           (Pteroylpoly-gamma-glutamate carboxypeptidase) (Fol
          Length = 751

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 292 LGLPPTPIHPVPRADARRIL 351
           +GLP  P+HP+  +DA+++L
Sbjct: 288 VGLPRIPVHPIGYSDAQKLL 307

>VGP_MABVM (P35253) Structural glycoprotein precursor (Virion spike|
           glycoprotein)
          Length = 681

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
 Frame = +2

Query: 143 TTEPNTTKHH---LSTYHISKSELGVYSSIIIH*TSTDHQSTVTMPADEEDAASGFLPPP 313
           T +P+   H+   +ST + SK      S+ + + T+ + QST+T        +   LPP 
Sbjct: 328 TAQPSMPPHNTTTISTNNTSKHNFSTLSAPLQNTTNDNTQSTITENEQTSAPSITTLPPT 387

Query: 314 SIPSLAPTLGGSCASLHTA 370
             P+ A +         TA
Sbjct: 388 GNPTTAKSTSSKKGPATTA 406


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,376,264
Number of Sequences: 219361
Number of extensions: 997927
Number of successful extensions: 3436
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3423
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)