ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast57b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_471731.1| Oryza sativa (japonica cultivar-group), predic... 194 2e-46
2emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4,... 194 2e-46
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 194 2e-46
4dbj|AK103443.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
5gb|AY826894.1| Isochrysis galbana clone IGRPI1 chloroplast ribos... 52 0.002
6gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 44 0.38
7dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.38
8gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 44 0.38
9gb|AY541063.1| Nocardia uniformis subsp. tsuyamanensis monocycli... 42 1.5
10gb|AC124581.4| Mus musculus BAC clone RP23-116E3 from chromosome... 42 1.5
11emb|AL360176.22| Human DNA sequence from clone RP11-124H7 on chr... 42 1.5
12gb|AY858556.1| Homo sapiens RAS guanyl releasing protein 1 splic... 40 5.9
13gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 5.9
14gb|AC091775.10| Oryza sativa chromosome 3 BAC OSJNBa0004G17 geno... 40 5.9
15gb|AY907424.1| Rhizobium etli bv. phaseoli strain IE2755 glutami... 40 5.9
16gb|AY907423.1| Rhizobium etli bv. mimosae strain IE4771 glutamin... 40 5.9
17gb|AY907422.1| Rhizobium etli bv. phaseoli strain IE4837 glutami... 40 5.9
18gb|AY907421.1| Rhizobium etli bv. phaseoli strain IE4874 glutami... 40 5.9
19gb|AY907420.1| Rhizobium etli bv. phaseoli strain IE1004 glutami... 40 5.9
20gb|AY907419.1| Rhizobium etli bv. phaseoli strain IE2704 glutami... 40 5.9
21gb|AY907418.1| Rhizobium etli bv. phaseoli strain IE950 glutamin... 40 5.9
22gb|AY907415.1| Rhizobium etli bv. phaseoli strain IE1009 glutami... 40 5.9
23gb|AY907414.1| Rhizobium etli bv. phaseoli strain IE4877 glutami... 40 5.9
24gb|AY907413.1| Rhizobium etli bv. phaseoli strain IE4804 glutami... 40 5.9
25gb|AY907412.1| Rhizobium etli bv. phaseoli strain IE2730 glutami... 40 5.9
26gb|AY907411.1| Rhizobium etli bv. phaseoli strain IE963 glutamin... 40 5.9
27gb|AY907410.1| Rhizobium etli bv. phaseoli strain IE4777 glutami... 40 5.9
28gb|AY907409.1| Rhizobium etli bv. phaseoli strain IE954 glutamin... 40 5.9
29gb|AY907408.1| Rhizobium etli bv. phaseoli strain IE4876 glutami... 40 5.9
30gb|AY907407.1| Rhizobium etli bv. phaseoli strain IE4815 glutami... 40 5.9
31gb|AY907405.1| Rhizobium etli bv. phaseoli strain IE4794 glutami... 40 5.9
32gb|AY907404.1| Rhizobium etli bv. phaseoli strain IE4813 glutami... 40 5.9
33gb|AY907403.1| Rhizobium etli bv. phaseoli strain IE4810 glutami... 40 5.9
34gb|AY929465.1| Rhizobium etli bv. phaseoli strain 4PR-2 glutamin... 40 5.9
35gb|AY929464.1| Rhizobium etli bv. phaseoli strain GR-12 glutamin... 40 5.9
36gb|AY929463.1| Rhizobium etli bv. phaseoli strain KIM5S glutamin... 40 5.9
37ref|XM_469458.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.9
38ref|NM_005739.2| Homo sapiens RAS guanyl releasing protein 1 (ca... 40 5.9
39gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 5.9
40gb|AY634315.1| Homo sapiens RAS guanyl releasing protein 1 splic... 40 5.9
41gb|BC067298.1| Homo sapiens RAS guanyl releasing protein 1 (calc... 40 5.9
42gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.9
43gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.9
44gb|AY954625.3| Homo sapiens Ras guanyl releasing protein 1 delta... 40 5.9
45emb|Z37980.2|EC4HPADNA E.coli hpa[G,R,E,D,F,H,I,X,A,B,C] genes 40 5.9
46gb|AC116158.5| Homo sapiens chromosome , clone RP11-102L12, comp... 40 5.9
47gb|DQ118643.1| Pavlova lutheri isolate 3028 chloroplast ribulose... 40 5.9
48gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 5.9
49gb|AC124306.4| Homo sapiens chromosome 15, clone RP11-275I4, com... 40 5.9
50gb|AC108218.3| Homo sapiens BAC clone RP11-717K11 from 4, comple... 40 5.9
51gb|AC092841.4| Homo sapiens BAC clone RP11-270F13 from 2, comple... 40 5.9
52dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
53gb|AY826893.1| Heterocapsa triquetra clone HTRPI1 chloroplast ri... 40 5.9
54gb|AY167561.1| Hordeum vulgare subsp. vulgare GAMYB-binding prot... 40 5.9
55gb|AF529014.1| Rhizobium etli bv. phaseoli IE2730 glutamine synt... 40 5.9
56dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.9
57gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 5.9
58gb|AY966005.1| Homo sapiens RAS guanyl releasing protein 1 splic... 40 5.9
59dbj|AK120249.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
60gb|AF169587.1|AF169587 Rhizobium galegae glutamine synthetase II... 40 5.9
61gb|AF169586.1|AF169586 Rhizobium leguminosarum bv. viciae glutam... 40 5.9
62dbj|AK102312.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
63gb|AF081197.1|AF081197 Homo sapiens calcium and DAG-regulated gu... 40 5.9
64gb|AF063974.1|AF063974 Rhizobium sp. 2M164 glutamine synthetase ... 40 5.9
65gb|AF063960.1|AF063960 Rhizobium sp. CIAM540 glutamine synthetas... 40 5.9
66gb|AF063956.1|AF063956 Rhizobium sp. CIAM1141 glutamine syntheta... 40 5.9
67gb|AF106071.1|AF106071 Homo sapiens ras activator RasGRP (RASGRP... 40 5.9
68gb|AF081195.1|AF081195 Homo sapiens calcium and DAG-regulated gu... 40 5.9
69gb|BC109296.1| Homo sapiens RAS guanyl releasing protein 1 (calc... 40 5.9
70gb|BC109297.1| Homo sapiens RAS guanyl releasing protein 1 (calc... 40 5.9
71gb|BC032849.1| Homo sapiens cDNA clone IMAGE:5266308, containing... 40 5.9
72gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 40 5.9
73gb|AY494799.1| Bradyrhizobium sp. ICMP 12835 glutamine synthetas... 40 5.9
74gb|AY494795.1| Rhizobium leguminosarum ICMP 14642 glutamine synt... 40 5.9
75gb|CP000036.1| Shigella boydii Sb227, complete genome 40 5.9
76gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 5.9 
>ref|XM_471731.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 828

 Score =  194 bits (98), Expect = 2e-46
 Identities = 149/166 (89%)
 Strand = Plus / Minus

                                                                       
Query: 227 acggtgccgtccttcttggcgacgatgaccttggtggccatgccgaggaacatgccgtgc 286
           |||||||||||||||||||||||||  |||  ||||||||||||||||||||||||||||
Sbjct: 803 acggtgccgtccttcttggcgacgaccaccgaggtggccatgccgaggaacatgccgtgc 744

                                                                       
Query: 287 tcgacgacgcccgtgatgcgcagcaggctgtcgctgatgtcgcgcaggttgccgtgtatg 346
           ||||||||||| ||||| || || |||| ||||||||| |||   |||| |||| |||||
Sbjct: 743 tcgacgacgccggtgatccgtaggaggcggtcgctgatctcgttgaggtcgccgcgtatg 684

                                                         
Query: 347 ccgtcgtcgaagaacatctcgacgatgtagttgccgttgtcggtga 392
           || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccatcctcgaagaacatctcgacgatgtagttgccgttgtcggtga 638
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>emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0023J03,
             complete sequence
          Length = 175555

 Score =  194 bits (98), Expect = 2e-46
 Identities = 149/166 (89%)
 Strand = Plus / Minus

                                                                         
Query: 227   acggtgccgtccttcttggcgacgatgaccttggtggccatgccgaggaacatgccgtgc 286
             |||||||||||||||||||||||||  |||  ||||||||||||||||||||||||||||
Sbjct: 69219 acggtgccgtccttcttggcgacgaccaccgaggtggccatgccgaggaacatgccgtgc 69160

                                                                         
Query: 287   tcgacgacgcccgtgatgcgcagcaggctgtcgctgatgtcgcgcaggttgccgtgtatg 346
             ||||||||||| ||||| || || |||| ||||||||| |||   |||| |||| |||||
Sbjct: 69159 tcgacgacgccggtgatccgtaggaggcggtcgctgatctcgttgaggtcgccgcgtatg 69100

                                                           
Query: 347   ccgtcgtcgaagaacatctcgacgatgtagttgccgttgtcggtga 392
             || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 69099 ccatcctcgaagaacatctcgacgatgtagttgccgttgtcggtga 69054
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  194 bits (98), Expect = 2e-46
 Identities = 149/166 (89%)
 Strand = Plus / Minus

                                                                            
Query: 227      acggtgccgtccttcttggcgacgatgaccttggtggccatgccgaggaacatgccgtgc 286
                |||||||||||||||||||||||||  |||  ||||||||||||||||||||||||||||
Sbjct: 13855560 acggtgccgtccttcttggcgacgaccaccgaggtggccatgccgaggaacatgccgtgc 13855501

                                                                            
Query: 287      tcgacgacgcccgtgatgcgcagcaggctgtcgctgatgtcgcgcaggttgccgtgtatg 346
                ||||||||||| ||||| || || |||| ||||||||| |||   |||| |||| |||||
Sbjct: 13855500 tcgacgacgccggtgatccgtaggaggcggtcgctgatctcgttgaggtcgccgcgtatg 13855441

                                                              
Query: 347      ccgtcgtcgaagaacatctcgacgatgtagttgccgttgtcggtga 392
                || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 13855440 ccatcctcgaagaacatctcgacgatgtagttgccgttgtcggtga 13855395
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>dbj|AK103443.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129E13, full
           insert sequence
          Length = 1182

 Score =  194 bits (98), Expect = 2e-46
 Identities = 149/166 (89%)
 Strand = Plus / Minus

                                                                       
Query: 227 acggtgccgtccttcttggcgacgatgaccttggtggccatgccgaggaacatgccgtgc 286
           |||||||||||||||||||||||||  |||  ||||||||||||||||||||||||||||
Sbjct: 913 acggtgccgtccttcttggcgacgaccaccgaggtggccatgccgaggaacatgccgtgc 854

                                                                       
Query: 287 tcgacgacgcccgtgatgcgcagcaggctgtcgctgatgtcgcgcaggttgccgtgtatg 346
           ||||||||||| ||||| || || |||| ||||||||| |||   |||| |||| |||||
Sbjct: 853 tcgacgacgccggtgatccgtaggaggcggtcgctgatctcgttgaggtcgccgcgtatg 794

                                                         
Query: 347 ccgtcgtcgaagaacatctcgacgatgtagttgccgttgtcggtga 392
           || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ccatcctcgaagaacatctcgacgatgtagttgccgttgtcggtga 748
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>gb|AY826894.1| Isochrysis galbana clone IGRPI1 chloroplast ribose-5-phosphate
           isomerase mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 689

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 365 tcgacgatgtagttgccgttgtcggt 390
           ||||||||||||||||||||||||||
Sbjct: 352 tcgacgatgtagttgccgttgtcggt 327
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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 220     gaccgccacggtgccgtccttcttgg 245
               ||||| ||||||||||||||||||||
Sbjct: 2379807 gaccgtcacggtgccgtccttcttgg 2379832
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 366     cgacgatgtagttgccgttgtcggtg 391
               ||||||||||| ||||||||||||||
Sbjct: 1437222 cgacgatgtagatgccgttgtcggtg 1437197
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 365    tcgacgatgtagttgccgttgtcggt 390
              |||| |||||||||||||||||||||
Sbjct: 858684 tcgaagatgtagttgccgttgtcggt 858709
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>gb|AY541063.1| Nocardia uniformis subsp. tsuyamanensis monocyclic beta-lactam
             antibiotic nocardicin A biosynthesis gene cluster, partial
             sequence
          Length = 33451

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 346   gccgtcgtcgaagaacatctc 366
             |||||||||||||||||||||
Sbjct: 32973 gccgtcgtcgaagaacatctc 32953
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>gb|AC124581.4| Mus musculus BAC clone RP23-116E3 from chromosome 13, complete sequence
          Length = 205173

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 161    tcttggctcattgtcatctcctctg 185
              ||||| |||||||||||||||||||
Sbjct: 114257 tcttgcctcattgtcatctcctctg 114233
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>emb|AL360176.22| Human DNA sequence from clone RP11-124H7 on chromosome 10 Contains the
             5' end of the MMP21 gene for matrix metalloproteinase 21,
             the UROS gene for uroporphyrinogen III synthase
             (congenital erythropoietic porphyria), the BCCIP gene for
             BRCA2 and CDKN1A interacting protein (TOK-1), the DDX32
             gene for DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32
             (FLJ10694, FLJ10889), the 5' UTR of a novel gene
             (LOC92565) and three CpG islands, complete sequence
          Length = 155699

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 256   cttggtggccatgccgaggaacatg 280
             ||||| |||||||||||||||||||
Sbjct: 18279 cttggaggccatgccgaggaacatg 18303
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>gb|AY858556.1| Homo sapiens RAS guanyl releasing protein 1 splice variant A mRNA,
           complete cds, alternatively spliced
          Length = 1910

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 attgtcatctcctctgcaga 189
           ||||||||||||||||||||
Sbjct: 290 attgtcatctcctctgcaga 309
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 218     aggaccgccacggtgccgtc 237
               ||||||||||||||||||||
Sbjct: 4553822 aggaccgccacggtgccgtc 4553841
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>gb|AC091775.10| Oryza sativa chromosome 3 BAC OSJNBa0004G17 genomic sequence, complete
             sequence
          Length = 139074

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   cggtgaggaagaggtcctcc 406
             ||||||||||||||||||||
Sbjct: 86333 cggtgaggaagaggtcctcc 86352
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>gb|AY907424.1| Rhizobium etli bv. phaseoli strain IE2755 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907423.1| Rhizobium etli bv. mimosae strain IE4771 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907422.1| Rhizobium etli bv. phaseoli strain IE4837 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907421.1| Rhizobium etli bv. phaseoli strain IE4874 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907420.1| Rhizobium etli bv. phaseoli strain IE1004 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907419.1| Rhizobium etli bv. phaseoli strain IE2704 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907418.1| Rhizobium etli bv. phaseoli strain IE950 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907415.1| Rhizobium etli bv. phaseoli strain IE1009 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907414.1| Rhizobium etli bv. phaseoli strain IE4877 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907413.1| Rhizobium etli bv. phaseoli strain IE4804 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907412.1| Rhizobium etli bv. phaseoli strain IE2730 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907411.1| Rhizobium etli bv. phaseoli strain IE963 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907410.1| Rhizobium etli bv. phaseoli strain IE4777 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907409.1| Rhizobium etli bv. phaseoli strain IE954 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907408.1| Rhizobium etli bv. phaseoli strain IE4876 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907407.1| Rhizobium etli bv. phaseoli strain IE4815 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907405.1| Rhizobium etli bv. phaseoli strain IE4794 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
to top
>gb|AY907404.1| Rhizobium etli bv. phaseoli strain IE4813 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
to top
>gb|AY907403.1| Rhizobium etli bv. phaseoli strain IE4810 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
to top
>gb|AY929465.1| Rhizobium etli bv. phaseoli strain 4PR-2 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY929464.1| Rhizobium etli bv. phaseoli strain GR-12 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
to top
>gb|AY929463.1| Rhizobium etli bv. phaseoli strain KIM5S glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>ref|XM_469458.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2973

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 387 cggtgaggaagaggtcctcc 406
           ||||||||||||||||||||
Sbjct: 911 cggtgaggaagaggtcctcc 930
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>ref|NM_005739.2| Homo sapiens RAS guanyl releasing protein 1 (calcium and
           DAG-regulated) (RASGRP1), mRNA
          Length = 5021

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 attgtcatctcctctgcaga 189
           ||||||||||||||||||||
Sbjct: 386 attgtcatctcctctgcaga 405
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 348     cgtcgtcgaagaacatctcg 367
               ||||||||||||||||||||
Sbjct: 2989879 cgtcgtcgaagaacatctcg 2989860
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>gb|AY634315.1| Homo sapiens RAS guanyl releasing protein 1 splice variant D mRNA,
           complete cds, alternatively spliced
          Length = 2651

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 attgtcatctcctctgcaga 189
           ||||||||||||||||||||
Sbjct: 296 attgtcatctcctctgcaga 315
to top
>gb|BC067298.1| Homo sapiens RAS guanyl releasing protein 1 (calcium and
           DAG-regulated), mRNA (cDNA clone IMAGE:30377671),
           partial cds
          Length = 2379

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 attgtcatctcctctgcaga 189
           ||||||||||||||||||||
Sbjct: 366 attgtcatctcctctgcaga 385
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 387      cggtgaggaagaggtcctcc 406
                ||||||||||||||||||||
Sbjct: 28066772 cggtgaggaagaggtcctcc 28066753
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 274     gaacatgccgtgctcgacgacgcc 297
               ||||| ||||||||||||||||||
Sbjct: 1681583 gaacaggccgtgctcgacgacgcc 1681560
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>gb|AY954625.3| Homo sapiens Ras guanyl releasing protein 1 delta 11 mRNA, complete
           cds, alternatively spliced
          Length = 2296

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 attgtcatctcctctgcaga 189
           ||||||||||||||||||||
Sbjct: 290 attgtcatctcctctgcaga 309
to top
>emb|Z37980.2|EC4HPADNA E.coli hpa[G,R,E,D,F,H,I,X,A,B,C] genes
          Length = 14852

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 218  aggaccgccacggtgccgtc 237
            ||||||||||||||||||||
Sbjct: 4137 aggaccgccacggtgccgtc 4118
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>gb|AC116158.5| Homo sapiens chromosome , clone RP11-102L12, complete sequence
          Length = 159236

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    attgtcatctcctctgcaga 189
              ||||||||||||||||||||
Sbjct: 154230 attgtcatctcctctgcaga 154211
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>gb|DQ118643.1| Pavlova lutheri isolate 3028 chloroplast ribulose phosphate
           isomerase mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 1069

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 365 tcgacgatgtagttgccgttgtcggtga 392
           ||||||||||| ||| ||||||||||||
Sbjct: 685 tcgacgatgtaattgtcgttgtcggtga 658
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 349     gtcgtcgaagaacatctcga 368
               ||||||||||||||||||||
Sbjct: 2992184 gtcgtcgaagaacatctcga 2992165
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>gb|AC124306.4| Homo sapiens chromosome 15, clone RP11-275I4, complete sequence
          Length = 160846

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  attgtcatctcctctgcaga 189
            ||||||||||||||||||||
Sbjct: 6998 attgtcatctcctctgcaga 6979
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>gb|AC108218.3| Homo sapiens BAC clone RP11-717K11 from 4, complete sequence
          Length = 138344

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 158   caatcttggctcattgtcatctcc 181
             |||||||||||||||| |||||||
Sbjct: 20545 caatcttggctcattgccatctcc 20522
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>gb|AC092841.4| Homo sapiens BAC clone RP11-270F13 from 2, complete sequence
          Length = 117962

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 158   caatcttggctcattgtcatctcc 181
             |||||||||||||||| |||||||
Sbjct: 21490 caatcttggctcattgccatctcc 21467
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 387      cggtgaggaagaggtcctcc 406
                ||||||||||||||||||||
Sbjct: 28158096 cggtgaggaagaggtcctcc 28158077
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>gb|AY826893.1| Heterocapsa triquetra clone HTRPI1 chloroplast ribose-5-phosphate
           isomerase mRNA, complete cds; nuclear gene for
           chloroplast product
          Length = 1177

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 365 tcgacgatgtagttgccgttgtcggtga 392
           |||||||||||||||| |||||| ||||
Sbjct: 843 tcgacgatgtagttgctgttgtccgtga 816
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>gb|AY167561.1| Hordeum vulgare subsp. vulgare GAMYB-binding protein (kgm) mRNA,
           complete cds
          Length = 2320

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 agaggttctgcttcaatctt 164
           ||||||||||||||||||||
Sbjct: 960 agaggttctgcttcaatctt 979
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>gb|AF529014.1| Rhizobium etli bv. phaseoli IE2730 glutamine synthetase II (glnII)
           gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 268     gccgaggaacatgccgtgctcgac 291
               |||||||||| |||||||||||||
Sbjct: 7492388 gccgaggaacgtgccgtgctcgac 7492411
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 218     aggaccgccacggtgccgtc 237
               ||||||||||||||||||||
Sbjct: 4545975 aggaccgccacggtgccgtc 4545994
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>gb|AY966005.1| Homo sapiens RAS guanyl releasing protein 1 splice variant B mRNA,
           complete cds, alternatively spliced
          Length = 2151

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 attgtcatctcctctgcaga 189
           ||||||||||||||||||||
Sbjct: 290 attgtcatctcctctgcaga 309
to top
>dbj|AK120249.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045D05, full
           insert sequence
          Length = 2962

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 387 cggtgaggaagaggtcctcc 406
           ||||||||||||||||||||
Sbjct: 913 cggtgaggaagaggtcctcc 932
to top
>gb|AF169587.1|AF169587 Rhizobium galegae glutamine synthetase II (glnII) gene, partial cds
          Length = 828

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 332 tcgtcgaagaacatctcgac 351
to top
>gb|AF169586.1|AF169586 Rhizobium leguminosarum bv. viciae glutamine synthetase II (glnII)
           gene, partial cds
          Length = 828

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 332 tcgtcgaagaacatctcgac 351
to top
>dbj|AK102312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090E08, full
           insert sequence
          Length = 2458

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 387 cggtgaggaagaggtcctcc 406
           ||||||||||||||||||||
Sbjct: 403 cggtgaggaagaggtcctcc 422
to top
>gb|AF081197.1|AF081197 Homo sapiens calcium and DAG-regulated guanine nucleotide exchange
           factor II mRNA, partial cds
          Length = 4877

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 attgtcatctcctctgcaga 189
           ||||||||||||||||||||
Sbjct: 240 attgtcatctcctctgcaga 259
to top
>gb|AF063974.1|AF063974 Rhizobium sp. 2M164 glutamine synthetase II gene, partial cds
          Length = 888

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 392 tcgtcgaagaacatctcgac 411
to top
>gb|AF063960.1|AF063960 Rhizobium sp. CIAM540 glutamine synthetase II gene, partial cds
          Length = 884

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 392 tcgtcgaagaacatctcgac 411
to top
>gb|AF063956.1|AF063956 Rhizobium sp. CIAM1141 glutamine synthetase II gene, partial cds
          Length = 875

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 391 tcgtcgaagaacatctcgac 410
to top
>gb|AF106071.1|AF106071 Homo sapiens ras activator RasGRP (RASGRP) mRNA, complete cds
          Length = 2412

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 attgtcatctcctctgcaga 189
           ||||||||||||||||||||
Sbjct: 295 attgtcatctcctctgcaga 314
to top
>gb|AF081195.1|AF081195 Homo sapiens calcium and DAG-regulated guanine nucleotide exchange
           factor II mRNA, complete cds
          Length = 5075

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 attgtcatctcctctgcaga 189
           ||||||||||||||||||||
Sbjct: 386 attgtcatctcctctgcaga 405
to top
>gb|BC109296.1| Homo sapiens RAS guanyl releasing protein 1 (calcium and
           DAG-regulated), mRNA (cDNA clone MGC:129998
           IMAGE:40034427), complete cds
          Length = 2494

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 attgtcatctcctctgcaga 189
           ||||||||||||||||||||
Sbjct: 333 attgtcatctcctctgcaga 352
to top
>gb|BC109297.1| Homo sapiens RAS guanyl releasing protein 1 (calcium and
           DAG-regulated), mRNA (cDNA clone MGC:129999
           IMAGE:40034428), complete cds
          Length = 2494

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 attgtcatctcctctgcaga 189
           ||||||||||||||||||||
Sbjct: 333 attgtcatctcctctgcaga 352
to top
>gb|BC032849.1| Homo sapiens cDNA clone IMAGE:5266308, containing frame-shift
           errors
          Length = 3248

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 attgtcatctcctctgcaga 189
           ||||||||||||||||||||
Sbjct: 363 attgtcatctcctctgcaga 382
to top
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                   
Query: 246     cgacgatgaccttggtggccatgccgaggaacatgccgtgctcgacgacgcc 297
               ||||||||||||||  | |||||  |||||||| ||||||||| || |||||
Sbjct: 2030563 cgacgatgaccttgtcgaccatgttgaggaacaggccgtgctccaccacgcc 2030614
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>gb|AY494799.1| Bradyrhizobium sp. ICMP 12835 glutamine synthetase II (glnII) gene,
           partial cds
          Length = 828

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 332 tcgtcgaagaacatctcgac 351
to top
>gb|AY494795.1| Rhizobium leguminosarum ICMP 14642 glutamine synthetase II (glnII)
           gene, partial cds
          Length = 828

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgtcgaagaacatctcgac 369
           ||||||||||||||||||||
Sbjct: 332 tcgtcgaagaacatctcgac 351
to top
>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 218     aggaccgccacggtgccgtc 237
               ||||||||||||||||||||
Sbjct: 4464235 aggaccgccacggtgccgtc 4464254
to top
>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 218     aggaccgccacggtgccgtc 237
               ||||||||||||||||||||
Sbjct: 4770378 aggaccgccacggtgccgtc 4770397


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,376,272
Number of Sequences: 3902068
Number of extensions: 3376272
Number of successful extensions: 69277
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68547
Number of HSP's gapped (non-prelim): 730
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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