ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast57a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SUBL_ARATH (O65351) Subtilisin-like protease precursor (EC 3.4.2... 42 5e-04
2Y115_ADE02 (P03290) Hypothetical protein E-115 33 0.25
3DPOL_HBVA4 (Q05486) P protein [Includes: DNA-directed DNA polyme... 30 2.7
4BAR1_SCHCO (Q92275) Pheromone B alpha 1 receptor 29 6.0

>SUBL_ARATH (O65351) Subtilisin-like protease precursor (EC 3.4.21.-)|
           (Cucumisin-like serine protease)
          Length = 757

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = -2

Query: 447 KPSGTNGFGRLVWSSDHHVVASPILATWT 361
           KPSG+N FG + WS   HVV SP+  +WT
Sbjct: 729 KPSGSNSFGSIEWSDGKHVVGSPVAISWT 757



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>Y115_ADE02 (P03290) Hypothetical protein E-115|
          Length = 115

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 17/30 (56%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = -3

Query: 446 SRRAPTGSAGS-SGPATTTWWPARSWRRGP 360
           +RRA TGSA + +GPA++  WPARS  R P
Sbjct: 84  TRRAKTGSASAPAGPASSAPWPARSPERTP 113



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>DPOL_HBVA4 (Q05486) P protein [Includes: DNA-directed DNA polymerase (EC|
           2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49);
           Ribonuclease H (EC 3.1.26.4)]
          Length = 843

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = +2

Query: 95  LHSPCFRNPNKSMPS*HTRCHNSLLAQAALASKRQQENETANQ*ITTPNRHTRT 256
           +H+P  R P    PS  TRC N+L +++A    +    E AN  ++T  RHT T
Sbjct: 247 VHTPT-RWPAGVEPS-STRCVNNLASRSASCFHQSAVREKANPSLSTSKRHTST 298



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>BAR1_SCHCO (Q92275) Pheromone B alpha 1 receptor|
          Length = 639

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
 Frame = -2

Query: 429 GFGRL------VWSSDHHVVASPILATWT*PPRPAVGAVLISNAVEGKNAAGQQWRRRSR 268
           GFGR+      VW S H +V    L  W  P    +       A E +      WRR  R
Sbjct: 248 GFGRIDQVPAIVWRSQHLIVVCNELTRWCAPVSAFIFFFYFGFAEEARRNYAAAWRRVCR 307

Query: 267 SDG 259
           + G
Sbjct: 308 ALG 310


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,043,693
Number of Sequences: 219361
Number of extensions: 1314239
Number of successful extensions: 3648
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3643
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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