>ZN509_MOUSE (Q8BXX2) Zinc finger protein 509|
          Length = 756

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 314 EIAAPTACLRRCLQLPCHEPHHGHRSYLLFS 406
           E++ P A    C +LPC +P+H ++   L+S
Sbjct: 186 EVSKPDAAGGSCPELPCKQPNHYYKLRTLYS 216

>ILR1_ARATH (P54968) IAA-amino acid hydrolase ILR1 precursor (EC 3.5.1.-)|
          Length = 442

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 80  NKISMRCHGCSFDRRARPLVTVQELLPLNKHLLLRQGKTESQPG 211
           +K+  + H C  D     L+   +LL   KHL+    K   QPG
Sbjct: 129 SKVDGKMHACGHDTHVAMLLGAAKLLQTTKHLIKGTVKLVFQPG 172

>KPB2_MOUSE (Q8BWJ3) Phosphorylase b kinase alpha regulatory chain, liver isoform|
            (Phosphorylase kinase alpha L subunit)
          Length = 1235

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 47   NRSTDSPFAKHNKISMRCHGCSFDRRARPLVTVQELLP 160
            NR     + K  KI  +CHG S D    P  T QE+ P
Sbjct: 1078 NRVPVGFYQKVWKILQKCHGLSIDGYVLPSSTTQEMTP 1115

>ITA8_CHICK (P26009) Integrin alpha-8 precursor [Contains: Integrin alpha-8|
           heavy chain; Integrin alpha-8 light chain]
          Length = 1044

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 122 RARPLVTVQELLPLNKHLLLRQGKTESQPG 211
           RARP+VTV  LL LN  ++    KT   PG
Sbjct: 464 RARPVVTVNALLILNPMIVNPDNKTCQPPG 493

>LSPA_CHLTR (O84413) Lipoprotein signal peptidase (EC 3.4.23.36)|
           (Prolipoprotein signal peptidase) (Signal peptidase II)
           (SPase II)
          Length = 167

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 119 CQMSIHGSAWKFCYVWQKESLLI 51
           CQ+S H SA+ + YVW   S LI
Sbjct: 31  CQLSPHSSAFLYSYVWGHFSFLI 53

>SMC4_SCHPO (P41004) Structural maintenance of chromosome 4 (Chromosome|
           segregation protein cut3) (Cell untimely torn protein 3)
          Length = 1324

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 7   YAMLSASYTLYDLEQINRLSFCQT*QNFHALPWMLI*QTSQTFGYSTRIVASKQASAVTA 186
           Y +L  +    +LEQ NR+++ +T      L   LI ++    G  TR+     +SA+T+
Sbjct: 745 YNVLQNTLVAKNLEQANRIAYGKTRWRVVTLSGQLIDKSGTMTGGGTRVKKGGMSSAITS 804

>GSHB_RALSO (P58579) Glutathione synthetase (EC 6.3.2.3) (Glutathione synthase)|
           (GSH synthetase) (GSH-S) (GSHase)
          Length = 324

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 198 SVFPCRNSRCLFRGNNSCTVTKGLARLSNEHPWQR 94
           +++ C+ S+    GN   TV   LA   +EH W R
Sbjct: 33  AIYTCQQSQLTLSGNVVETVATPLALTGDEHDWYR 67

>BM86_BOOMI (P20736) Glycoprotein antigen BM86 precursor (Protective antigen)|
          Length = 650

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
 Frame = +2

Query: 188 GKTESQPGITCKATSIK*IARGEEKMQQRTS--------VMLCQ*KMGRFEIAAPTACLR 343
           G T ++ GITCK+ S       E+K   R +         +LC+    +  +     C+ 
Sbjct: 236 GSTVAEDGITCKSISHTVSCTAEQKQTCRPTEDCRVHKGTVLCECPWNQHLVG--DTCIS 293

Query: 344 RCLQLPCHE 370
            C+   CHE
Sbjct: 294 DCVDKKCHE 302

>FLIG_BUCAI (P57176) Flagellar motor switch protein fliG|
          Length = 331

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 183 RNSRCLFRGNNSCTVTKGLARLSNEHPWQRMEILLCLAKGESVDLFQII 37
           RN+R   +  N     +    L  EHP     IL+CL K +S ++   +
Sbjct: 101 RNARICIKALNYMKAKQVAFLLDKEHPQIITTILICLNKNQSAEVLSFL 149

>YQEI_ECOLI (Q46942) Hypothetical protein yqeI|
          Length = 269

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 35  YMIWNRSTDSPFAKHNKISMRCHGCSFD 118
           Y +WN +   PF K  K     +GC F+
Sbjct: 171 YWLWNNNQPKPFFKDYKTVAEINGCHFN 198


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,403,720
Number of Sequences: 219361
Number of extensions: 1066474
Number of successful extensions: 2675
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2675
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)