ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast57a01 |
|---|---|
| Clone Library Name | barley_pub |
>ABRB_ABRPR (Q06077) Abrin-b precursor [Contains: Abrin-b A chain (EC 3.2.2.22)| (rRNA N-glycosidase); Linker peptide; Abrin-b B chain] Length = 527 Score = 31.2 bits (69), Expect = 1.1 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 11/88 (12%) Frame = -1 Query: 359 RFYGRNGLCYAQDDGDHRSGGDKASSRTNEELTCILFW-------LASQGKQLDVE---H 210 R GRNG+C D + +G + + + L W + S GK L E Sbjct: 277 RIGGRNGMCVDVYDDGYHNGNRIIAWKCKDRLEENQLWTLKSDKTIRSNGKCLTTEGYAP 336 Query: 209 GNN-MLFKCTINCFMLESDYFFLWETGT 129 GN M++ CT + E+ Y+ +W+ GT Sbjct: 337 GNYVMIYDCT--SAVAEATYWEIWDNGT 362
>FBLN1_CAEEL (O77469) Fibulin-1 precursor| Length = 728 Score = 29.6 bits (65), Expect = 3.1 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -1 Query: 326 QDDGDHRSGGDKASSRTNEELTCILFWLASQGKQLDVEHGN 204 +DD R+G + +S+ N E C + WL G +DV+ N Sbjct: 246 RDDPYSRAGEYREASQANTEFGCPMGWLFQHGHCVDVDECN 286
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 29.3 bits (64), Expect = 4.0 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -1 Query: 395 FVTFEEPHGYDGRFYGRNGLCYAQ 324 FV FE+P + YGRNG Y Q Sbjct: 57 FVRFEDPRDAEDAIYGRNGYDYGQ 80
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 29.3 bits (64), Expect = 4.0 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -1 Query: 395 FVTFEEPHGYDGRFYGRNGLCYAQ 324 FV FE+P + YGRNG Y Q Sbjct: 56 FVRFEDPRDAEDAIYGRNGYDYGQ 79
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 29.3 bits (64), Expect = 4.0 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -1 Query: 395 FVTFEEPHGYDGRFYGRNGLCYAQ 324 FV FE+P + YGRNG Y Q Sbjct: 56 FVRFEDPRDAEDAIYGRNGYDYGQ 79
>SSPB_STAAW (Q8NX99) Staphopain B precursor (EC 3.4.22.-) (Staphylopain B)| (Staphylococcal cysteine proteinase B) Length = 393 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +2 Query: 92 YNTLKVGKRVYTLSQSPREKNNLTRA 169 Y +K GK VYTL+ SP+ K++L ++ Sbjct: 103 YPVIKDGKIVYTLTLSPKNKDDLNKS 128
>SSPB_STAAU (Q70UQ8) Staphopain B precursor (EC 3.4.22.-) (Staphylopain B)| (Staphylococcal cysteine proteinase B) Length = 393 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +2 Query: 92 YNTLKVGKRVYTLSQSPREKNNLTRA 169 Y +K GK VYTL+ SP+ K++L ++ Sbjct: 103 YPVIKDGKIVYTLTLSPKNKDDLNKS 128
>SSPB_STAAS (Q6GAG5) Staphopain B precursor (EC 3.4.22.-) (Staphylopain B)| (Staphylococcal cysteine proteinase B) Length = 393 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +2 Query: 92 YNTLKVGKRVYTLSQSPREKNNLTRA 169 Y +K GK VYTL+ SP+ K++L ++ Sbjct: 103 YPVIKDGKIVYTLTLSPKNKDDLNKS 128
>SSPB_STAAR (Q6GI35) Staphopain B precursor (EC 3.4.22.-) (Staphylopain B)| (Staphylococcal cysteine proteinase B) Length = 393 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +2 Query: 92 YNTLKVGKRVYTLSQSPREKNNLTRA 169 Y +K GK VYTL+ SP+ K++L ++ Sbjct: 103 YPVIKDGKIVYTLTLSPKNKDDLNKS 128
>SSPB_STAAN (Q7A6A7) Staphopain B precursor (EC 3.4.22.-) (Staphylopain B)| (Staphylococcal cysteine proteinase B) Length = 393 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +2 Query: 92 YNTLKVGKRVYTLSQSPREKNNLTRA 169 Y +K GK VYTL+ SP+ K++L ++ Sbjct: 103 YPVIKDGKIVYTLTLSPKNKDDLNKS 128
>SSPB_STAAM (Q99V46) Staphopain B precursor (EC 3.4.22.-) (Staphylopain B)| (Staphylococcal cysteine proteinase B) Length = 393 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +2 Query: 92 YNTLKVGKRVYTLSQSPREKNNLTRA 169 Y +K GK VYTL+ SP+ K++L ++ Sbjct: 103 YPVIKDGKIVYTLTLSPKNKDDLNKS 128
>SSPB_STAAC (Q5HH36) Staphopain B precursor (EC 3.4.22.-) (Staphylopain B)| (Staphylococcal cysteine proteinase B) Length = 393 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +2 Query: 92 YNTLKVGKRVYTLSQSPREKNNLTRA 169 Y +K GK VYTL+ SP+ K++L ++ Sbjct: 103 YPVIKDGKIVYTLTLSPKNKDDLNKS 128
>PTPA1_CANAL (Q5ADP9) Serine/threonine-protein phosphatase 2A activator 1 (EC| 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1) (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl phosphatase activator 1) Length = 424 Score = 28.5 bits (62), Expect = 6.9 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -1 Query: 221 DVEHGNNMLFKCTINCFMLESDYFFLWETGTRCKLFY 111 ++ NN K I+ F+LES Y+ L G++ +L Y Sbjct: 141 ELSSSNNSSSKSNIDGFLLESSYYLLNSFGSKIRLDY 177 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,993,967 Number of Sequences: 219361 Number of extensions: 1015890 Number of successful extensions: 2098 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2070 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2098 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
